Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00500

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00499 and MIT1002_00500 are separated by 93 nucleotidesMIT1002_00500 and MIT1002_00501 are separated by 147 nucleotidesMIT1002_00501 and MIT1002_00502 are separated by 233 nucleotides MIT1002_00499: MIT1002_00499 - Colicin I receptor precursor, at 541,317 to 543,788 _00499 MIT1002_00500: MIT1002_00500 - putative PEP-CTERM system TPR-repeat lipoprotein, at 543,882 to 545,450 _00500 MIT1002_00501: MIT1002_00501 - hypothetical protein, at 545,598 to 546,059 _00501 MIT1002_00502: MIT1002_00502 - Protein of unknown function, DUF, at 546,293 to 546,670 _00502 Position (kb) 543 544 545 546Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 542.923 kb on - strand, within MIT1002_00499at 542.947 kb on - strand, within MIT1002_00499at 542.956 kb on - strand, within MIT1002_00499at 543.017 kb on + strand, within MIT1002_00499at 543.018 kb on - strand, within MIT1002_00499at 543.113 kb on + strand, within MIT1002_00499at 543.113 kb on + strand, within MIT1002_00499at 543.121 kb on - strand, within MIT1002_00499at 543.128 kb on + strand, within MIT1002_00499at 543.128 kb on + strand, within MIT1002_00499at 543.128 kb on + strand, within MIT1002_00499at 543.128 kb on + strand, within MIT1002_00499at 543.128 kb on + strand, within MIT1002_00499at 543.136 kb on - strand, within MIT1002_00499at 543.136 kb on - strand, within MIT1002_00499at 543.136 kb on - strand, within MIT1002_00499at 543.142 kb on + strand, within MIT1002_00499at 543.156 kb on - strand, within MIT1002_00499at 543.215 kb on + strand, within MIT1002_00499at 543.216 kb on - strand, within MIT1002_00499at 543.223 kb on - strand, within MIT1002_00499at 543.291 kb on - strand, within MIT1002_00499at 543.349 kb on - strand, within MIT1002_00499at 543.354 kb on - strand, within MIT1002_00499at 543.362 kb on - strand, within MIT1002_00499at 543.372 kb on + strand, within MIT1002_00499at 543.408 kb on + strand, within MIT1002_00499at 543.426 kb on + strand, within MIT1002_00499at 543.434 kb on - strand, within MIT1002_00499at 543.498 kb on + strand, within MIT1002_00499at 543.506 kb on - strand, within MIT1002_00499at 543.506 kb on - strand, within MIT1002_00499at 543.516 kb on - strand, within MIT1002_00499at 543.537 kb on + strand, within MIT1002_00499at 543.637 kb on + strandat 543.646 kb on + strandat 543.667 kb on + strandat 543.667 kb on + strandat 543.696 kb on - strandat 543.735 kb on + strandat 543.735 kb on + strandat 543.759 kb on - strandat 543.759 kb on - strandat 543.793 kb on - strandat 543.793 kb on - strandat 543.900 kb on + strandat 543.961 kb on + strandat 543.969 kb on - strandat 543.969 kb on - strandat 544.070 kb on + strand, within MIT1002_00500at 544.149 kb on + strand, within MIT1002_00500at 544.149 kb on + strand, within MIT1002_00500at 544.149 kb on + strand, within MIT1002_00500at 544.149 kb on + strand, within MIT1002_00500at 544.149 kb on + strand, within MIT1002_00500at 544.149 kb on + strand, within MIT1002_00500at 544.157 kb on - strand, within MIT1002_00500at 544.157 kb on - strand, within MIT1002_00500at 544.157 kb on - strand, within MIT1002_00500at 544.157 kb on - strand, within MIT1002_00500at 544.157 kb on - strand, within MIT1002_00500at 544.157 kb on - strand, within MIT1002_00500at 544.157 kb on - strand, within MIT1002_00500at 544.157 kb on - strand, within MIT1002_00500at 544.190 kb on - strand, within MIT1002_00500at 544.269 kb on - strand, within MIT1002_00500at 544.312 kb on + strand, within MIT1002_00500at 544.374 kb on + strand, within MIT1002_00500at 544.374 kb on + strand, within MIT1002_00500at 544.382 kb on - strand, within MIT1002_00500at 544.463 kb on + strand, within MIT1002_00500at 544.463 kb on + strand, within MIT1002_00500at 544.463 kb on + strand, within MIT1002_00500at 544.463 kb on + strand, within MIT1002_00500at 544.463 kb on + strand, within MIT1002_00500at 544.463 kb on + strand, within MIT1002_00500at 544.463 kb on + strand, within MIT1002_00500at 544.463 kb on + strand, within MIT1002_00500at 544.471 kb on - strand, within MIT1002_00500at 544.471 kb on - strand, within MIT1002_00500at 544.471 kb on - strand, within MIT1002_00500at 544.498 kb on - strand, within MIT1002_00500at 544.508 kb on + strand, within MIT1002_00500at 544.516 kb on - strand, within MIT1002_00500at 544.519 kb on + strand, within MIT1002_00500at 544.526 kb on - strand, within MIT1002_00500at 544.538 kb on + strand, within MIT1002_00500at 544.546 kb on - strand, within MIT1002_00500at 544.643 kb on + strand, within MIT1002_00500at 544.676 kb on + strand, within MIT1002_00500at 544.684 kb on - strand, within MIT1002_00500at 544.756 kb on - strand, within MIT1002_00500at 544.761 kb on - strand, within MIT1002_00500at 544.761 kb on - strand, within MIT1002_00500at 544.833 kb on + strand, within MIT1002_00500at 544.839 kb on + strand, within MIT1002_00500at 544.839 kb on - strand, within MIT1002_00500at 544.841 kb on - strand, within MIT1002_00500at 544.845 kb on + strand, within MIT1002_00500at 544.896 kb on + strand, within MIT1002_00500at 544.925 kb on + strand, within MIT1002_00500at 544.967 kb on + strand, within MIT1002_00500at 545.093 kb on + strand, within MIT1002_00500at 545.110 kb on + strand, within MIT1002_00500at 545.134 kb on + strand, within MIT1002_00500at 545.135 kb on - strand, within MIT1002_00500at 545.142 kb on - strand, within MIT1002_00500at 545.164 kb on + strand, within MIT1002_00500at 545.172 kb on - strand, within MIT1002_00500at 545.172 kb on - strand, within MIT1002_00500at 545.288 kb on + strand, within MIT1002_00500at 545.296 kb on - strandat 545.296 kb on - strandat 545.416 kb on + strandat 545.477 kb on - strandat 545.669 kb on + strand, within MIT1002_00501at 545.780 kb on - strand, within MIT1002_00501at 545.801 kb on - strand, within MIT1002_00501at 545.837 kb on - strand, within MIT1002_00501at 545.993 kb on + strand, within MIT1002_00501at 545.998 kb on - strand, within MIT1002_00501at 546.036 kb on - strandat 546.106 kb on + strandat 546.179 kb on + strandat 546.285 kb on + strandat 546.286 kb on + strandat 546.287 kb on + strandat 546.295 kb on - strandat 546.295 kb on - strandat 546.402 kb on - strand, within MIT1002_00502at 546.417 kb on - strand, within MIT1002_00502

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
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542,923 - MIT1002_00499 0.65 -0.5
542,947 - MIT1002_00499 0.66 +0.4
542,956 - MIT1002_00499 0.66 -1.1
543,017 + MIT1002_00499 0.69 +2.6
543,018 - MIT1002_00499 0.69 -1.1
543,113 + MIT1002_00499 0.73 -1.0
543,113 + MIT1002_00499 0.73 -0.5
543,121 - MIT1002_00499 0.73 +0.8
543,128 + MIT1002_00499 0.73 -0.9
543,128 + MIT1002_00499 0.73 -2.7
543,128 + MIT1002_00499 0.73 -0.6
543,128 + MIT1002_00499 0.73 -0.2
543,128 + MIT1002_00499 0.73 +0.7
543,136 - MIT1002_00499 0.74 -0.6
543,136 - MIT1002_00499 0.74 -2.5
543,136 - MIT1002_00499 0.74 -0.5
543,142 + MIT1002_00499 0.74 -1.5
543,156 - MIT1002_00499 0.74 -1.8
543,215 + MIT1002_00499 0.77 +0.5
543,216 - MIT1002_00499 0.77 -0.9
543,223 - MIT1002_00499 0.77 +1.5
543,291 - MIT1002_00499 0.80 -2.8
543,349 - MIT1002_00499 0.82 +1.4
543,354 - MIT1002_00499 0.82 +1.0
543,362 - MIT1002_00499 0.83 +2.1
543,372 + MIT1002_00499 0.83 -0.7
543,408 + MIT1002_00499 0.85 +1.4
543,426 + MIT1002_00499 0.85 -0.4
543,434 - MIT1002_00499 0.86 -1.3
543,498 + MIT1002_00499 0.88 +0.2
543,506 - MIT1002_00499 0.89 +0.4
543,506 - MIT1002_00499 0.89 -1.2
543,516 - MIT1002_00499 0.89 -1.2
543,537 + MIT1002_00499 0.90 -0.1
543,637 + -2.7
543,646 + +0.2
543,667 + -0.8
543,667 + +0.3
543,696 - -2.6
543,735 + -0.2
543,735 + -0.1
543,759 - +2.5
543,759 - -1.0
543,793 - -0.5
543,793 - -2.8
543,900 + -0.8
543,961 + -2.5
543,969 - -1.5
543,969 - +0.2
544,070 + MIT1002_00500 0.12 +2.4
544,149 + MIT1002_00500 0.17 +0.6
544,149 + MIT1002_00500 0.17 +0.7
544,149 + MIT1002_00500 0.17 -0.6
544,149 + MIT1002_00500 0.17 -1.5
544,149 + MIT1002_00500 0.17 +0.3
544,149 + MIT1002_00500 0.17 -1.9
544,157 - MIT1002_00500 0.18 -1.1
544,157 - MIT1002_00500 0.18 +0.7
544,157 - MIT1002_00500 0.18 -0.4
544,157 - MIT1002_00500 0.18 -0.8
544,157 - MIT1002_00500 0.18 +0.2
544,157 - MIT1002_00500 0.18 +2.0
544,157 - MIT1002_00500 0.18 -0.1
544,157 - MIT1002_00500 0.18 +0.1
544,190 - MIT1002_00500 0.20 -0.1
544,269 - MIT1002_00500 0.25 -2.3
544,312 + MIT1002_00500 0.27 -1.0
544,374 + MIT1002_00500 0.31 +1.6
544,374 + MIT1002_00500 0.31 +0.0
544,382 - MIT1002_00500 0.32 -0.5
544,463 + MIT1002_00500 0.37 -2.1
544,463 + MIT1002_00500 0.37 -0.5
544,463 + MIT1002_00500 0.37 -2.6
544,463 + MIT1002_00500 0.37 -0.3
544,463 + MIT1002_00500 0.37 -0.2
544,463 + MIT1002_00500 0.37 -0.4
544,463 + MIT1002_00500 0.37 -0.1
544,463 + MIT1002_00500 0.37 +0.0
544,471 - MIT1002_00500 0.38 -0.6
544,471 - MIT1002_00500 0.38 -0.4
544,471 - MIT1002_00500 0.38 -1.8
544,498 - MIT1002_00500 0.39 +0.4
544,508 + MIT1002_00500 0.40 -0.7
544,516 - MIT1002_00500 0.40 -0.1
544,519 + MIT1002_00500 0.41 -0.2
544,526 - MIT1002_00500 0.41 -0.6
544,538 + MIT1002_00500 0.42 -0.9
544,546 - MIT1002_00500 0.42 -0.6
544,643 + MIT1002_00500 0.49 +1.0
544,676 + MIT1002_00500 0.51 +0.7
544,684 - MIT1002_00500 0.51 -1.9
544,756 - MIT1002_00500 0.56 -0.2
544,761 - MIT1002_00500 0.56 +0.2
544,761 - MIT1002_00500 0.56 -0.1
544,833 + MIT1002_00500 0.61 -1.2
544,839 + MIT1002_00500 0.61 +0.2
544,839 - MIT1002_00500 0.61 -1.6
544,841 - MIT1002_00500 0.61 -0.2
544,845 + MIT1002_00500 0.61 +0.6
544,896 + MIT1002_00500 0.65 -3.6
544,925 + MIT1002_00500 0.66 -0.8
544,967 + MIT1002_00500 0.69 +1.6
545,093 + MIT1002_00500 0.77 -0.2
545,110 + MIT1002_00500 0.78 +0.9
545,134 + MIT1002_00500 0.80 -0.9
545,135 - MIT1002_00500 0.80 -0.0
545,142 - MIT1002_00500 0.80 -0.9
545,164 + MIT1002_00500 0.82 +1.0
545,172 - MIT1002_00500 0.82 +0.0
545,172 - MIT1002_00500 0.82 -0.6
545,288 + MIT1002_00500 0.90 +0.3
545,296 - -2.0
545,296 - +0.9
545,416 + -2.5
545,477 - -1.5
545,669 + MIT1002_00501 0.15 +0.3
545,780 - MIT1002_00501 0.39 -0.4
545,801 - MIT1002_00501 0.44 +0.2
545,837 - MIT1002_00501 0.52 -2.1
545,993 + MIT1002_00501 0.85 -0.3
545,998 - MIT1002_00501 0.87 -0.2
546,036 - +0.7
546,106 + +0.5
546,179 + -0.4
546,285 + -1.6
546,286 + +0.7
546,287 + +0.7
546,295 - +0.8
546,295 - -1.3
546,402 - MIT1002_00502 0.29 +2.0
546,417 - MIT1002_00502 0.33 -0.4

Or see this region's nucleotide sequence