Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00430 and MIT1002_00431 are separated by 326 nucleotides MIT1002_00431 and MIT1002_00432 are separated by 63 nucleotides MIT1002_00432 and MIT1002_00433 are separated by 12 nucleotides
MIT1002_00430: MIT1002_00430 - Signal transduction histidine-protein kinase BarA, at 466,592 to 469,351
_00430
MIT1002_00431: MIT1002_00431 - DNA topoisomerase 4 subunit A, at 469,678 to 471,963
_00431
MIT1002_00432: MIT1002_00432 - Heme NO binding protein, at 472,027 to 472,563
_00432
MIT1002_00433: MIT1002_00433 - Cyclic di-GMP phosphodiesterase Gmr, at 472,576 to 474,744
_00433
Position (kb) 469
470
471
472 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 468.763 kb on - strand, within MIT1002_00430 at 468.830 kb on + strand, within MIT1002_00430 at 468.868 kb on + strand, within MIT1002_00430 at 469.058 kb on + strand, within MIT1002_00430 at 469.059 kb on + strand, within MIT1002_00430 at 469.267 kb on + strand at 469.355 kb on + strand at 469.378 kb on + strand at 469.493 kb on - strand at 469.547 kb on + strand at 469.560 kb on + strand at 469.580 kb on + strand at 472.257 kb on + strand, within MIT1002_00432 at 472.257 kb on + strand, within MIT1002_00432 at 472.257 kb on + strand, within MIT1002_00432 at 472.265 kb on - strand, within MIT1002_00432 at 472.267 kb on + strand, within MIT1002_00432 at 472.284 kb on + strand, within MIT1002_00432 at 472.287 kb on - strand, within MIT1002_00432 at 472.287 kb on - strand, within MIT1002_00432 at 472.353 kb on + strand, within MIT1002_00432 at 472.353 kb on + strand, within MIT1002_00432 at 472.361 kb on - strand, within MIT1002_00432 at 472.382 kb on - strand, within MIT1002_00432 at 472.392 kb on + strand, within MIT1002_00432 at 472.400 kb on - strand, within MIT1002_00432 at 472.409 kb on - strand, within MIT1002_00432 at 472.430 kb on - strand, within MIT1002_00432 at 472.430 kb on - strand, within MIT1002_00432 at 472.430 kb on - strand, within MIT1002_00432 at 472.467 kb on - strand, within MIT1002_00432 at 472.467 kb on - strand, within MIT1002_00432 at 472.467 kb on - strand, within MIT1002_00432 at 472.483 kb on + strand, within MIT1002_00432 at 472.491 kb on - strand, within MIT1002_00432 at 472.491 kb on - strand, within MIT1002_00432 at 472.491 kb on - strand, within MIT1002_00432 at 472.536 kb on - strand at 472.536 kb on - strand at 472.536 kb on - strand at 472.586 kb on + strand at 472.586 kb on + strand at 472.638 kb on - strand at 472.679 kb on - strand at 472.808 kb on - strand, within MIT1002_00433 at 472.846 kb on + strand, within MIT1002_00433 at 472.846 kb on + strand, within MIT1002_00433 at 472.864 kb on - strand, within MIT1002_00433 at 472.873 kb on - strand, within MIT1002_00433 at 472.876 kb on - strand, within MIT1002_00433
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5 remove 468,763 - MIT1002_00430 0.79 -1.3 468,830 + MIT1002_00430 0.81 -2.0 468,868 + MIT1002_00430 0.82 +0.2 469,058 + MIT1002_00430 0.89 +2.4 469,059 + MIT1002_00430 0.89 -0.9 469,267 + +0.7 469,355 + -0.2 469,378 + -0.2 469,493 - -0.8 469,547 + +0.7 469,560 + -1.0 469,580 + +0.1 472,257 + MIT1002_00432 0.43 +0.2 472,257 + MIT1002_00432 0.43 -0.1 472,257 + MIT1002_00432 0.43 +1.5 472,265 - MIT1002_00432 0.44 -0.6 472,267 + MIT1002_00432 0.45 +0.3 472,284 + MIT1002_00432 0.48 +0.8 472,287 - MIT1002_00432 0.48 -0.8 472,287 - MIT1002_00432 0.48 +1.2 472,353 + MIT1002_00432 0.61 -0.7 472,353 + MIT1002_00432 0.61 +0.4 472,361 - MIT1002_00432 0.62 -1.9 472,382 - MIT1002_00432 0.66 +3.2 472,392 + MIT1002_00432 0.68 +0.7 472,400 - MIT1002_00432 0.69 -0.6 472,409 - MIT1002_00432 0.71 +0.8 472,430 - MIT1002_00432 0.75 -0.5 472,430 - MIT1002_00432 0.75 +1.1 472,430 - MIT1002_00432 0.75 -1.0 472,467 - MIT1002_00432 0.82 -0.1 472,467 - MIT1002_00432 0.82 +1.1 472,467 - MIT1002_00432 0.82 -0.7 472,483 + MIT1002_00432 0.85 +1.4 472,491 - MIT1002_00432 0.86 -1.6 472,491 - MIT1002_00432 0.86 -0.8 472,491 - MIT1002_00432 0.86 +0.8 472,536 - +0.8 472,536 - +0.4 472,536 - -0.1 472,586 + +1.2 472,586 + -1.0 472,638 - +1.4 472,679 - -0.9 472,808 - MIT1002_00433 0.11 +0.2 472,846 + MIT1002_00433 0.12 +0.2 472,846 + MIT1002_00433 0.12 -1.7 472,864 - MIT1002_00433 0.13 -2.0 472,873 - MIT1002_00433 0.14 +2.4 472,876 - MIT1002_00433 0.14 -1.3
Or see this region's nucleotide sequence