Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00429 and MIT1002_00430 are separated by 35 nucleotides MIT1002_00430 and MIT1002_00431 are separated by 326 nucleotides
MIT1002_00429: MIT1002_00429 - Transposase, at 466,041 to 466,556
_00429
MIT1002_00430: MIT1002_00430 - Signal transduction histidine-protein kinase BarA, at 466,592 to 469,351
_00430
MIT1002_00431: MIT1002_00431 - DNA topoisomerase 4 subunit A, at 469,678 to 471,963
_00431
Position (kb) 466
467
468
469
470 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 466.702 kb on - strand at 466.725 kb on + strand at 466.770 kb on - strand at 466.816 kb on + strand at 466.865 kb on - strand at 467.032 kb on - strand, within MIT1002_00430 at 467.071 kb on + strand, within MIT1002_00430 at 467.079 kb on - strand, within MIT1002_00430 at 467.079 kb on - strand, within MIT1002_00430 at 467.079 kb on - strand, within MIT1002_00430 at 467.092 kb on + strand, within MIT1002_00430 at 467.100 kb on - strand, within MIT1002_00430 at 467.137 kb on + strand, within MIT1002_00430 at 467.162 kb on + strand, within MIT1002_00430 at 467.250 kb on + strand, within MIT1002_00430 at 467.250 kb on + strand, within MIT1002_00430 at 467.299 kb on + strand, within MIT1002_00430 at 467.422 kb on - strand, within MIT1002_00430 at 467.475 kb on - strand, within MIT1002_00430 at 467.475 kb on - strand, within MIT1002_00430 at 467.486 kb on + strand, within MIT1002_00430 at 467.494 kb on - strand, within MIT1002_00430 at 467.494 kb on - strand, within MIT1002_00430 at 467.563 kb on + strand, within MIT1002_00430 at 467.918 kb on - strand, within MIT1002_00430 at 467.981 kb on + strand, within MIT1002_00430 at 468.007 kb on - strand, within MIT1002_00430 at 468.125 kb on + strand, within MIT1002_00430 at 468.362 kb on - strand, within MIT1002_00430 at 468.362 kb on - strand, within MIT1002_00430 at 468.362 kb on - strand, within MIT1002_00430 at 468.481 kb on - strand, within MIT1002_00430 at 468.481 kb on - strand, within MIT1002_00430 at 468.763 kb on - strand, within MIT1002_00430 at 468.830 kb on + strand, within MIT1002_00430 at 468.868 kb on + strand, within MIT1002_00430 at 469.058 kb on + strand, within MIT1002_00430 at 469.059 kb on + strand, within MIT1002_00430 at 469.267 kb on + strand at 469.355 kb on + strand at 469.378 kb on + strand at 469.493 kb on - strand at 469.547 kb on + strand at 469.560 kb on + strand at 469.580 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5 remove 466,702 - +0.2 466,725 + -0.2 466,770 - -1.9 466,816 + +0.4 466,865 - -1.3 467,032 - MIT1002_00430 0.16 -0.9 467,071 + MIT1002_00430 0.17 -2.0 467,079 - MIT1002_00430 0.18 -2.7 467,079 - MIT1002_00430 0.18 -2.4 467,079 - MIT1002_00430 0.18 +0.3 467,092 + MIT1002_00430 0.18 -0.9 467,100 - MIT1002_00430 0.18 -1.9 467,137 + MIT1002_00430 0.20 -2.1 467,162 + MIT1002_00430 0.21 -0.2 467,250 + MIT1002_00430 0.24 +1.1 467,250 + MIT1002_00430 0.24 -2.9 467,299 + MIT1002_00430 0.26 +0.0 467,422 - MIT1002_00430 0.30 -1.6 467,475 - MIT1002_00430 0.32 -0.6 467,475 - MIT1002_00430 0.32 -0.5 467,486 + MIT1002_00430 0.32 +1.3 467,494 - MIT1002_00430 0.33 -1.9 467,494 - MIT1002_00430 0.33 -0.5 467,563 + MIT1002_00430 0.35 -1.1 467,918 - MIT1002_00430 0.48 +0.8 467,981 + MIT1002_00430 0.50 -1.6 468,007 - MIT1002_00430 0.51 -0.8 468,125 + MIT1002_00430 0.56 -2.1 468,362 - MIT1002_00430 0.64 -0.4 468,362 - MIT1002_00430 0.64 -0.9 468,362 - MIT1002_00430 0.64 -1.5 468,481 - MIT1002_00430 0.68 -0.2 468,481 - MIT1002_00430 0.68 +0.0 468,763 - MIT1002_00430 0.79 -1.3 468,830 + MIT1002_00430 0.81 -2.0 468,868 + MIT1002_00430 0.82 +0.2 469,058 + MIT1002_00430 0.89 +2.4 469,059 + MIT1002_00430 0.89 -0.9 469,267 + +0.7 469,355 + -0.2 469,378 + -0.2 469,493 - -0.8 469,547 + +0.7 469,560 + -1.0 469,580 + +0.1
Or see this region's nucleotide sequence