Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00354 and MIT1002_00355 are separated by 157 nucleotides MIT1002_00355 and MIT1002_00356 are separated by 296 nucleotides MIT1002_00356 and MIT1002_00357 are separated by 92 nucleotides
MIT1002_00354: MIT1002_00354 - Diguanylate cyclase DosC, at 380,872 to 382,671
_00354
MIT1002_00355: MIT1002_00355 - putative permease, DMT superfamily, at 382,829 to 383,722
_00355
MIT1002_00356: MIT1002_00356 - phosphoglycolate phosphatase, at 384,019 to 384,522
_00356
MIT1002_00357: MIT1002_00357 - hypothetical protein, at 384,615 to 385,502
_00357
Position (kb) 382
383
384 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 381.856 kb on + strand, within MIT1002_00354 at 381.861 kb on + strand, within MIT1002_00354 at 381.869 kb on - strand, within MIT1002_00354 at 381.956 kb on - strand, within MIT1002_00354 at 381.961 kb on + strand, within MIT1002_00354 at 381.969 kb on - strand, within MIT1002_00354 at 381.972 kb on + strand, within MIT1002_00354 at 381.999 kb on + strand, within MIT1002_00354 at 381.999 kb on + strand, within MIT1002_00354 at 382.000 kb on - strand, within MIT1002_00354 at 382.064 kb on + strand, within MIT1002_00354 at 382.085 kb on + strand, within MIT1002_00354 at 382.151 kb on + strand, within MIT1002_00354 at 382.153 kb on - strand, within MIT1002_00354 at 382.159 kb on - strand, within MIT1002_00354 at 382.159 kb on - strand, within MIT1002_00354 at 382.169 kb on - strand, within MIT1002_00354 at 382.221 kb on + strand, within MIT1002_00354 at 382.262 kb on + strand, within MIT1002_00354 at 382.270 kb on - strand, within MIT1002_00354 at 382.405 kb on - strand, within MIT1002_00354 at 382.442 kb on + strand, within MIT1002_00354 at 382.521 kb on - strand at 382.539 kb on + strand at 382.547 kb on - strand at 382.549 kb on + strand at 382.549 kb on + strand at 382.597 kb on - strand at 382.654 kb on + strand at 382.660 kb on + strand at 382.661 kb on - strand at 382.668 kb on - strand at 382.668 kb on - strand at 382.668 kb on - strand at 382.722 kb on + strand at 382.722 kb on + strand at 382.744 kb on - strand at 382.801 kb on + strand at 382.866 kb on + strand at 382.879 kb on - strand at 382.889 kb on + strand at 382.897 kb on - strand at 382.897 kb on - strand at 382.899 kb on - strand at 382.935 kb on + strand, within MIT1002_00355 at 382.969 kb on + strand, within MIT1002_00355 at 382.970 kb on + strand, within MIT1002_00355 at 382.970 kb on + strand, within MIT1002_00355 at 382.978 kb on - strand, within MIT1002_00355 at 383.123 kb on + strand, within MIT1002_00355 at 383.296 kb on + strand, within MIT1002_00355 at 383.301 kb on - strand, within MIT1002_00355 at 383.317 kb on + strand, within MIT1002_00355 at 383.325 kb on + strand, within MIT1002_00355 at 383.325 kb on + strand, within MIT1002_00355 at 383.339 kb on + strand, within MIT1002_00355 at 383.347 kb on - strand, within MIT1002_00355 at 383.350 kb on + strand, within MIT1002_00355 at 383.355 kb on - strand, within MIT1002_00355 at 383.389 kb on - strand, within MIT1002_00355 at 383.417 kb on + strand, within MIT1002_00355 at 383.423 kb on - strand, within MIT1002_00355 at 383.446 kb on + strand, within MIT1002_00355 at 383.461 kb on + strand, within MIT1002_00355 at 383.577 kb on + strand, within MIT1002_00355 at 383.585 kb on - strand, within MIT1002_00355 at 383.671 kb on - strand at 383.671 kb on - strand at 383.692 kb on + strand at 383.699 kb on + strand at 383.699 kb on + strand at 383.702 kb on - strand at 383.705 kb on - strand at 383.707 kb on - strand at 383.707 kb on - strand at 383.802 kb on + strand at 383.803 kb on - strand at 383.810 kb on - strand at 383.810 kb on - strand at 383.812 kb on + strand at 383.866 kb on - strand at 383.880 kb on + strand at 383.880 kb on + strand at 383.928 kb on + strand at 383.933 kb on + strand at 383.933 kb on + strand at 384.008 kb on + strand at 384.099 kb on - strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.106 kb on + strand, within MIT1002_00356 at 384.111 kb on + strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.114 kb on - strand, within MIT1002_00356 at 384.133 kb on + strand, within MIT1002_00356 at 384.141 kb on - strand, within MIT1002_00356 at 384.151 kb on + strand, within MIT1002_00356 at 384.151 kb on + strand, within MIT1002_00356 at 384.151 kb on + strand, within MIT1002_00356 at 384.151 kb on + strand, within MIT1002_00356 at 384.151 kb on + strand, within MIT1002_00356 at 384.151 kb on + strand, within MIT1002_00356 at 384.151 kb on + strand, within MIT1002_00356 at 384.159 kb on - strand, within MIT1002_00356 at 384.159 kb on - strand, within MIT1002_00356 at 384.159 kb on - strand, within MIT1002_00356 at 384.159 kb on - strand, within MIT1002_00356 at 384.159 kb on - strand, within MIT1002_00356 at 384.159 kb on - strand, within MIT1002_00356 at 384.159 kb on - strand, within MIT1002_00356 at 384.159 kb on - strand, within MIT1002_00356 at 384.231 kb on + strand, within MIT1002_00356 at 384.276 kb on + strand, within MIT1002_00356 at 384.277 kb on + strand, within MIT1002_00356 at 384.323 kb on + strand, within MIT1002_00356 at 384.323 kb on + strand, within MIT1002_00356 at 384.323 kb on + strand, within MIT1002_00356 at 384.334 kb on + strand, within MIT1002_00356 at 384.342 kb on + strand, within MIT1002_00356 at 384.384 kb on + strand, within MIT1002_00356 at 384.392 kb on - strand, within MIT1002_00356 at 384.401 kb on + strand, within MIT1002_00356 at 384.430 kb on - strand, within MIT1002_00356 at 384.457 kb on - strand, within MIT1002_00356 at 384.526 kb on + strand at 384.579 kb on - strand at 384.650 kb on - strand at 384.661 kb on - strand at 384.661 kb on - strand at 384.682 kb on + strand at 384.695 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5 remove 381,856 + MIT1002_00354 0.55 -1.0 381,861 + MIT1002_00354 0.55 -0.4 381,869 - MIT1002_00354 0.55 -1.6 381,956 - MIT1002_00354 0.60 -1.2 381,961 + MIT1002_00354 0.60 -0.5 381,969 - MIT1002_00354 0.61 +0.1 381,972 + MIT1002_00354 0.61 -1.4 381,999 + MIT1002_00354 0.63 +1.6 381,999 + MIT1002_00354 0.63 +0.3 382,000 - MIT1002_00354 0.63 -0.7 382,064 + MIT1002_00354 0.66 +0.1 382,085 + MIT1002_00354 0.67 -0.4 382,151 + MIT1002_00354 0.71 +0.7 382,153 - MIT1002_00354 0.71 -0.7 382,159 - MIT1002_00354 0.71 +2.3 382,159 - MIT1002_00354 0.71 -0.2 382,169 - MIT1002_00354 0.72 -0.7 382,221 + MIT1002_00354 0.75 +1.0 382,262 + MIT1002_00354 0.77 -1.2 382,270 - MIT1002_00354 0.78 -0.1 382,405 - MIT1002_00354 0.85 -0.7 382,442 + MIT1002_00354 0.87 +0.7 382,521 - -0.7 382,539 + +0.4 382,547 - -0.4 382,549 + +0.6 382,549 + +0.9 382,597 - -0.7 382,654 + -0.2 382,660 + +0.2 382,661 - -3.8 382,668 - -0.1 382,668 - -2.4 382,668 - -0.1 382,722 + -0.4 382,722 + -1.2 382,744 - +0.4 382,801 + +0.1 382,866 + +0.1 382,879 - +0.0 382,889 + +1.1 382,897 - +1.4 382,897 - +0.2 382,899 - +0.4 382,935 + MIT1002_00355 0.12 -0.3 382,969 + MIT1002_00355 0.16 -0.8 382,970 + MIT1002_00355 0.16 +0.0 382,970 + MIT1002_00355 0.16 -1.9 382,978 - MIT1002_00355 0.17 +1.2 383,123 + MIT1002_00355 0.33 +0.3 383,296 + MIT1002_00355 0.52 -0.1 383,301 - MIT1002_00355 0.53 -1.1 383,317 + MIT1002_00355 0.55 +0.3 383,325 + MIT1002_00355 0.55 -0.6 383,325 + MIT1002_00355 0.55 +1.6 383,339 + MIT1002_00355 0.57 -2.5 383,347 - MIT1002_00355 0.58 -0.8 383,350 + MIT1002_00355 0.58 +1.4 383,355 - MIT1002_00355 0.59 +0.5 383,389 - MIT1002_00355 0.63 +2.0 383,417 + MIT1002_00355 0.66 -1.2 383,423 - MIT1002_00355 0.66 -1.5 383,446 + MIT1002_00355 0.69 -1.9 383,461 + MIT1002_00355 0.71 -0.7 383,577 + MIT1002_00355 0.84 -1.1 383,585 - MIT1002_00355 0.85 +1.3 383,671 - +1.3 383,671 - +0.5 383,692 + +0.0 383,699 + +0.9 383,699 + +0.7 383,702 - +1.0 383,705 - +1.0 383,707 - -0.1 383,707 - +0.2 383,802 + -0.8 383,803 - -0.9 383,810 - -2.4 383,810 - -0.5 383,812 + -0.3 383,866 - -1.0 383,880 + +0.2 383,880 + -0.5 383,928 + +1.3 383,933 + +0.5 383,933 + +2.2 384,008 + +2.0 384,099 - MIT1002_00356 0.16 +1.3 384,106 + MIT1002_00356 0.17 +0.4 384,106 + MIT1002_00356 0.17 +0.2 384,106 + MIT1002_00356 0.17 +0.0 384,106 + MIT1002_00356 0.17 -0.1 384,106 + MIT1002_00356 0.17 -0.8 384,106 + MIT1002_00356 0.17 -0.5 384,106 + MIT1002_00356 0.17 +1.2 384,106 + MIT1002_00356 0.17 -0.4 384,106 + MIT1002_00356 0.17 -0.6 384,106 + MIT1002_00356 0.17 -1.2 384,111 + MIT1002_00356 0.18 -0.6 384,114 - MIT1002_00356 0.19 +1.8 384,114 - MIT1002_00356 0.19 -0.6 384,114 - MIT1002_00356 0.19 +1.6 384,114 - MIT1002_00356 0.19 -0.3 384,114 - MIT1002_00356 0.19 +2.4 384,114 - MIT1002_00356 0.19 +0.1 384,114 - MIT1002_00356 0.19 -0.1 384,114 - MIT1002_00356 0.19 -1.1 384,114 - MIT1002_00356 0.19 +1.2 384,114 - MIT1002_00356 0.19 -1.8 384,133 + MIT1002_00356 0.23 +1.0 384,141 - MIT1002_00356 0.24 -0.5 384,151 + MIT1002_00356 0.26 -0.2 384,151 + MIT1002_00356 0.26 -1.1 384,151 + MIT1002_00356 0.26 +0.2 384,151 + MIT1002_00356 0.26 +0.7 384,151 + MIT1002_00356 0.26 -0.7 384,151 + MIT1002_00356 0.26 +1.1 384,151 + MIT1002_00356 0.26 +0.2 384,159 - MIT1002_00356 0.28 +1.0 384,159 - MIT1002_00356 0.28 +0.8 384,159 - MIT1002_00356 0.28 -1.5 384,159 - MIT1002_00356 0.28 +0.8 384,159 - MIT1002_00356 0.28 -0.3 384,159 - MIT1002_00356 0.28 -2.3 384,159 - MIT1002_00356 0.28 -2.9 384,159 - MIT1002_00356 0.28 -0.3 384,231 + MIT1002_00356 0.42 +0.1 384,276 + MIT1002_00356 0.51 -2.0 384,277 + MIT1002_00356 0.51 +0.1 384,323 + MIT1002_00356 0.60 -1.2 384,323 + MIT1002_00356 0.60 -0.3 384,323 + MIT1002_00356 0.60 +0.2 384,334 + MIT1002_00356 0.62 -0.8 384,342 + MIT1002_00356 0.64 +1.3 384,384 + MIT1002_00356 0.72 +1.9 384,392 - MIT1002_00356 0.74 +0.5 384,401 + MIT1002_00356 0.76 -0.9 384,430 - MIT1002_00356 0.82 -1.5 384,457 - MIT1002_00356 0.87 -0.0 384,526 + +1.8 384,579 - -0.1 384,650 - -0.0 384,661 - -1.7 384,661 - +1.5 384,682 + +0.1 384,695 - -1.0
Or see this region's nucleotide sequence