Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00338

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00337 and MIT1002_00338 are separated by 157 nucleotidesMIT1002_00338 and MIT1002_00339 are separated by 9 nucleotides MIT1002_00337: MIT1002_00337 - Inner membrane transport protein YbaT, at 361,190 to 362,515 _00337 MIT1002_00338: MIT1002_00338 - Copper resistance protein B precursor, at 362,673 to 363,419 _00338 MIT1002_00339: MIT1002_00339 - Copper resistance protein A precursor, at 363,429 to 365,243 _00339 Position (kb) 362 363 364Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 361.677 kb on + strand, within MIT1002_00337at 361.685 kb on - strand, within MIT1002_00337at 361.698 kb on + strand, within MIT1002_00337at 361.706 kb on - strand, within MIT1002_00337at 361.917 kb on - strand, within MIT1002_00337at 361.962 kb on - strand, within MIT1002_00337at 361.994 kb on - strand, within MIT1002_00337at 362.124 kb on + strand, within MIT1002_00337at 362.124 kb on + strand, within MIT1002_00337at 362.132 kb on - strand, within MIT1002_00337at 362.132 kb on - strand, within MIT1002_00337at 362.132 kb on - strand, within MIT1002_00337at 362.133 kb on - strand, within MIT1002_00337at 362.241 kb on + strand, within MIT1002_00337at 362.290 kb on + strand, within MIT1002_00337at 362.308 kb on - strand, within MIT1002_00337at 362.311 kb on - strand, within MIT1002_00337at 362.344 kb on - strand, within MIT1002_00337at 362.453 kb on + strandat 362.466 kb on + strandat 362.466 kb on + strandat 362.526 kb on + strandat 362.526 kb on + strandat 362.640 kb on - strandat 362.691 kb on + strandat 362.700 kb on - strandat 362.705 kb on - strandat 362.739 kb on - strandat 362.762 kb on - strand, within MIT1002_00338at 362.787 kb on + strand, within MIT1002_00338at 362.806 kb on + strand, within MIT1002_00338at 362.884 kb on - strand, within MIT1002_00338at 362.978 kb on + strand, within MIT1002_00338at 363.017 kb on - strand, within MIT1002_00338at 363.046 kb on - strand, within MIT1002_00338at 363.056 kb on - strand, within MIT1002_00338at 363.056 kb on - strand, within MIT1002_00338at 363.056 kb on - strand, within MIT1002_00338at 363.096 kb on + strand, within MIT1002_00338at 363.130 kb on + strand, within MIT1002_00338at 363.130 kb on + strand, within MIT1002_00338at 363.138 kb on - strand, within MIT1002_00338at 363.138 kb on - strand, within MIT1002_00338at 363.138 kb on - strand, within MIT1002_00338at 363.140 kb on + strand, within MIT1002_00338at 363.158 kb on - strand, within MIT1002_00338at 363.174 kb on + strand, within MIT1002_00338at 363.218 kb on + strand, within MIT1002_00338at 363.244 kb on + strand, within MIT1002_00338at 363.251 kb on + strand, within MIT1002_00338at 363.252 kb on - strand, within MIT1002_00338at 363.252 kb on - strand, within MIT1002_00338at 363.259 kb on - strand, within MIT1002_00338at 363.357 kb on + strandat 363.375 kb on + strandat 363.388 kb on - strandat 363.403 kb on + strandat 363.435 kb on + strandat 363.445 kb on + strandat 363.450 kb on + strandat 363.450 kb on + strandat 363.469 kb on + strandat 363.471 kb on + strandat 363.500 kb on + strandat 363.519 kb on + strandat 363.519 kb on + strandat 363.547 kb on - strandat 363.555 kb on + strandat 363.572 kb on + strandat 363.572 kb on + strandat 363.582 kb on - strandat 363.654 kb on + strand, within MIT1002_00339at 363.686 kb on + strand, within MIT1002_00339at 363.694 kb on - strand, within MIT1002_00339at 363.694 kb on - strand, within MIT1002_00339at 363.694 kb on - strand, within MIT1002_00339at 363.738 kb on - strand, within MIT1002_00339at 363.740 kb on - strand, within MIT1002_00339at 363.740 kb on - strand, within MIT1002_00339at 363.859 kb on - strand, within MIT1002_00339at 363.872 kb on + strand, within MIT1002_00339at 363.878 kb on + strand, within MIT1002_00339at 363.944 kb on + strand, within MIT1002_00339at 363.959 kb on - strand, within MIT1002_00339at 364.018 kb on + strand, within MIT1002_00339at 364.018 kb on + strand, within MIT1002_00339at 364.031 kb on - strand, within MIT1002_00339at 364.078 kb on + strand, within MIT1002_00339at 364.078 kb on + strand, within MIT1002_00339at 364.078 kb on + strand, within MIT1002_00339at 364.078 kb on + strand, within MIT1002_00339at 364.086 kb on - strand, within MIT1002_00339at 364.086 kb on - strand, within MIT1002_00339at 364.122 kb on - strand, within MIT1002_00339at 364.127 kb on - strand, within MIT1002_00339at 364.128 kb on + strand, within MIT1002_00339at 364.138 kb on + strand, within MIT1002_00339at 364.138 kb on + strand, within MIT1002_00339at 364.156 kb on - strand, within MIT1002_00339at 364.197 kb on + strand, within MIT1002_00339at 364.204 kb on - strand, within MIT1002_00339at 364.204 kb on - strand, within MIT1002_00339at 364.204 kb on - strand, within MIT1002_00339at 364.216 kb on + strand, within MIT1002_00339at 364.291 kb on + strand, within MIT1002_00339at 364.330 kb on - strand, within MIT1002_00339at 364.381 kb on - strand, within MIT1002_00339

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
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361,677 + MIT1002_00337 0.37 +0.9
361,685 - MIT1002_00337 0.37 -0.8
361,698 + MIT1002_00337 0.38 -0.9
361,706 - MIT1002_00337 0.39 +0.8
361,917 - MIT1002_00337 0.55 +0.3
361,962 - MIT1002_00337 0.58 -2.2
361,994 - MIT1002_00337 0.61 -1.5
362,124 + MIT1002_00337 0.70 -2.2
362,124 + MIT1002_00337 0.70 +0.9
362,132 - MIT1002_00337 0.71 +0.2
362,132 - MIT1002_00337 0.71 +0.9
362,132 - MIT1002_00337 0.71 -0.4
362,133 - MIT1002_00337 0.71 -1.2
362,241 + MIT1002_00337 0.79 -2.2
362,290 + MIT1002_00337 0.83 -0.2
362,308 - MIT1002_00337 0.84 -0.3
362,311 - MIT1002_00337 0.85 +1.8
362,344 - MIT1002_00337 0.87 +1.4
362,453 + -0.6
362,466 + +2.1
362,466 + -0.3
362,526 + -0.7
362,526 + -0.2
362,640 - +0.3
362,691 + +0.1
362,700 - -0.2
362,705 - +0.6
362,739 - -0.7
362,762 - MIT1002_00338 0.12 +0.4
362,787 + MIT1002_00338 0.15 -0.7
362,806 + MIT1002_00338 0.18 +0.5
362,884 - MIT1002_00338 0.28 -0.7
362,978 + MIT1002_00338 0.41 -0.2
363,017 - MIT1002_00338 0.46 -0.2
363,046 - MIT1002_00338 0.50 -0.6
363,056 - MIT1002_00338 0.51 +1.2
363,056 - MIT1002_00338 0.51 -0.4
363,056 - MIT1002_00338 0.51 -1.6
363,096 + MIT1002_00338 0.57 +0.8
363,130 + MIT1002_00338 0.61 -0.4
363,130 + MIT1002_00338 0.61 -0.2
363,138 - MIT1002_00338 0.62 -2.7
363,138 - MIT1002_00338 0.62 +1.2
363,138 - MIT1002_00338 0.62 -1.0
363,140 + MIT1002_00338 0.63 +0.5
363,158 - MIT1002_00338 0.65 -0.8
363,174 + MIT1002_00338 0.67 -0.9
363,218 + MIT1002_00338 0.73 +0.6
363,244 + MIT1002_00338 0.76 +1.0
363,251 + MIT1002_00338 0.77 +0.4
363,252 - MIT1002_00338 0.78 +0.4
363,252 - MIT1002_00338 0.78 -0.8
363,259 - MIT1002_00338 0.78 -2.1
363,357 + -0.5
363,375 + +0.1
363,388 - -0.3
363,403 + -0.7
363,435 + +1.7
363,445 + +2.2
363,450 + +1.5
363,450 + +0.5
363,469 + -0.5
363,471 + +0.5
363,500 + +1.4
363,519 + +0.7
363,519 + +1.4
363,547 - +0.7
363,555 + -0.2
363,572 + +0.7
363,572 + +1.3
363,582 - +2.6
363,654 + MIT1002_00339 0.12 -2.5
363,686 + MIT1002_00339 0.14 +1.0
363,694 - MIT1002_00339 0.15 +0.0
363,694 - MIT1002_00339 0.15 -0.4
363,694 - MIT1002_00339 0.15 -0.1
363,738 - MIT1002_00339 0.17 +1.4
363,740 - MIT1002_00339 0.17 +0.0
363,740 - MIT1002_00339 0.17 +0.1
363,859 - MIT1002_00339 0.24 +0.7
363,872 + MIT1002_00339 0.24 +0.4
363,878 + MIT1002_00339 0.25 -2.9
363,944 + MIT1002_00339 0.28 +0.0
363,959 - MIT1002_00339 0.29 -1.7
364,018 + MIT1002_00339 0.32 -2.5
364,018 + MIT1002_00339 0.32 -0.4
364,031 - MIT1002_00339 0.33 -0.6
364,078 + MIT1002_00339 0.36 +0.0
364,078 + MIT1002_00339 0.36 +3.2
364,078 + MIT1002_00339 0.36 +0.0
364,078 + MIT1002_00339 0.36 -1.2
364,086 - MIT1002_00339 0.36 +0.7
364,086 - MIT1002_00339 0.36 +1.4
364,122 - MIT1002_00339 0.38 +3.6
364,127 - MIT1002_00339 0.38 +0.6
364,128 + MIT1002_00339 0.39 +1.7
364,138 + MIT1002_00339 0.39 +0.6
364,138 + MIT1002_00339 0.39 -1.4
364,156 - MIT1002_00339 0.40 +0.3
364,197 + MIT1002_00339 0.42 +2.8
364,204 - MIT1002_00339 0.43 -0.6
364,204 - MIT1002_00339 0.43 +0.2
364,204 - MIT1002_00339 0.43 -1.2
364,216 + MIT1002_00339 0.43 -1.7
364,291 + MIT1002_00339 0.47 -0.3
364,330 - MIT1002_00339 0.50 +0.9
364,381 - MIT1002_00339 0.52 -0.1

Or see this region's nucleotide sequence