Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00305 and MIT1002_00306 are separated by 404 nucleotides MIT1002_00306 and MIT1002_00307 are separated by 79 nucleotides MIT1002_00307 and MIT1002_00308 overlap by 17 nucleotides
MIT1002_00305: MIT1002_00305 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 330,486 to 331,220
_00305
MIT1002_00306: MIT1002_00306 - hypothetical protein, at 331,625 to 331,918
_00306
MIT1002_00307: MIT1002_00307 - Response regulator ArlR, at 331,998 to 332,804
_00307
MIT1002_00308: MIT1002_00308 - Sensor kinase CusS, at 332,788 to 334,227
_00308
Position (kb) 331
332
333 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 331.005 kb on - strand, within MIT1002_00305 at 331.005 kb on - strand, within MIT1002_00305 at 331.019 kb on + strand, within MIT1002_00305 at 331.138 kb on + strand, within MIT1002_00305 at 331.359 kb on - strand at 331.379 kb on + strand at 331.379 kb on + strand at 331.387 kb on - strand at 331.389 kb on - strand at 331.389 kb on - strand at 331.401 kb on - strand at 331.422 kb on - strand at 331.426 kb on + strand at 331.439 kb on - strand at 331.483 kb on - strand at 331.522 kb on + strand at 331.558 kb on - strand at 331.639 kb on + strand at 331.724 kb on + strand, within MIT1002_00306 at 331.779 kb on + strand, within MIT1002_00306 at 331.911 kb on + strand at 331.923 kb on + strand at 331.923 kb on + strand at 331.935 kb on + strand at 331.973 kb on - strand at 332.036 kb on - strand at 332.036 kb on - strand at 332.070 kb on - strand at 332.078 kb on - strand at 332.119 kb on + strand, within MIT1002_00307 at 332.133 kb on + strand, within MIT1002_00307 at 332.219 kb on - strand, within MIT1002_00307 at 332.220 kb on - strand, within MIT1002_00307 at 332.234 kb on - strand, within MIT1002_00307 at 332.237 kb on + strand, within MIT1002_00307 at 332.245 kb on - strand, within MIT1002_00307 at 332.288 kb on - strand, within MIT1002_00307 at 332.298 kb on - strand, within MIT1002_00307 at 332.304 kb on - strand, within MIT1002_00307 at 332.448 kb on - strand, within MIT1002_00307 at 332.499 kb on + strand, within MIT1002_00307 at 332.507 kb on - strand, within MIT1002_00307 at 332.526 kb on - strand, within MIT1002_00307 at 332.623 kb on - strand, within MIT1002_00307 at 332.672 kb on - strand, within MIT1002_00307 at 332.696 kb on + strand, within MIT1002_00307 at 332.704 kb on - strand, within MIT1002_00307 at 332.734 kb on + strand at 332.781 kb on - strand at 332.899 kb on + strand at 332.908 kb on - strand at 332.919 kb on - strand at 332.927 kb on - strand at 332.935 kb on + strand, within MIT1002_00308 at 332.943 kb on - strand, within MIT1002_00308 at 332.943 kb on - strand, within MIT1002_00308 at 332.958 kb on + strand, within MIT1002_00308 at 332.966 kb on - strand, within MIT1002_00308 at 332.991 kb on + strand, within MIT1002_00308 at 332.991 kb on + strand, within MIT1002_00308 at 332.994 kb on - strand, within MIT1002_00308 at 332.999 kb on - strand, within MIT1002_00308 at 332.999 kb on - strand, within MIT1002_00308 at 333.111 kb on - strand, within MIT1002_00308 at 333.113 kb on + strand, within MIT1002_00308 at 333.113 kb on + strand, within MIT1002_00308 at 333.121 kb on - strand, within MIT1002_00308 at 333.121 kb on - strand, within MIT1002_00308 at 333.124 kb on + strand, within MIT1002_00308 at 333.143 kb on + strand, within MIT1002_00308 at 333.143 kb on + strand, within MIT1002_00308 at 333.143 kb on + strand, within MIT1002_00308 at 333.148 kb on + strand, within MIT1002_00308 at 333.149 kb on - strand, within MIT1002_00308 at 333.149 kb on - strand, within MIT1002_00308 at 333.149 kb on - strand, within MIT1002_00308 at 333.151 kb on - strand, within MIT1002_00308 at 333.151 kb on - strand, within MIT1002_00308 at 333.161 kb on - strand, within MIT1002_00308 at 333.177 kb on - strand, within MIT1002_00308 at 333.199 kb on - strand, within MIT1002_00308 at 333.226 kb on - strand, within MIT1002_00308 at 333.240 kb on + strand, within MIT1002_00308 at 333.240 kb on + strand, within MIT1002_00308 at 333.240 kb on + strand, within MIT1002_00308 at 333.246 kb on + strand, within MIT1002_00308 at 333.246 kb on + strand, within MIT1002_00308 at 333.246 kb on + strand, within MIT1002_00308 at 333.246 kb on + strand, within MIT1002_00308 at 333.246 kb on + strand, within MIT1002_00308 at 333.246 kb on + strand, within MIT1002_00308 at 333.246 kb on + strand, within MIT1002_00308 at 333.246 kb on + strand, within MIT1002_00308 at 333.253 kb on - strand, within MIT1002_00308 at 333.254 kb on - strand, within MIT1002_00308 at 333.254 kb on - strand, within MIT1002_00308 at 333.271 kb on + strand, within MIT1002_00308 at 333.271 kb on + strand, within MIT1002_00308 at 333.271 kb on - strand, within MIT1002_00308 at 333.271 kb on - strand, within MIT1002_00308 at 333.337 kb on - strand, within MIT1002_00308 at 333.371 kb on + strand, within MIT1002_00308 at 333.379 kb on - strand, within MIT1002_00308 at 333.381 kb on + strand, within MIT1002_00308 at 333.381 kb on + strand, within MIT1002_00308 at 333.381 kb on + strand, within MIT1002_00308 at 333.381 kb on + strand, within MIT1002_00308 at 333.381 kb on + strand, within MIT1002_00308 at 333.381 kb on + strand, within MIT1002_00308 at 333.381 kb on + strand, within MIT1002_00308 at 333.386 kb on + strand, within MIT1002_00308 at 333.386 kb on + strand, within MIT1002_00308 at 333.386 kb on + strand, within MIT1002_00308 at 333.387 kb on + strand, within MIT1002_00308 at 333.388 kb on + strand, within MIT1002_00308 at 333.389 kb on + strand, within MIT1002_00308 at 333.389 kb on - strand, within MIT1002_00308 at 333.389 kb on - strand, within MIT1002_00308 at 333.389 kb on - strand, within MIT1002_00308 at 333.389 kb on - strand, within MIT1002_00308 at 333.389 kb on - strand, within MIT1002_00308 at 333.389 kb on - strand, within MIT1002_00308 at 333.389 kb on - strand, within MIT1002_00308 at 333.389 kb on - strand, within MIT1002_00308 at 333.393 kb on + strand, within MIT1002_00308 at 333.393 kb on + strand, within MIT1002_00308 at 333.393 kb on + strand, within MIT1002_00308 at 333.394 kb on - strand, within MIT1002_00308 at 333.395 kb on - strand, within MIT1002_00308 at 333.395 kb on - strand, within MIT1002_00308 at 333.401 kb on - strand, within MIT1002_00308 at 333.401 kb on - strand, within MIT1002_00308 at 333.401 kb on - strand, within MIT1002_00308 at 333.409 kb on + strand, within MIT1002_00308 at 333.409 kb on + strand, within MIT1002_00308 at 333.409 kb on + strand, within MIT1002_00308 at 333.409 kb on + strand, within MIT1002_00308 at 333.409 kb on + strand, within MIT1002_00308 at 333.409 kb on + strand, within MIT1002_00308 at 333.411 kb on - strand, within MIT1002_00308 at 333.417 kb on - strand, within MIT1002_00308 at 333.417 kb on - strand, within MIT1002_00308 at 333.432 kb on + strand, within MIT1002_00308 at 333.440 kb on - strand, within MIT1002_00308 at 333.440 kb on - strand, within MIT1002_00308 at 333.448 kb on - strand, within MIT1002_00308 at 333.455 kb on - strand, within MIT1002_00308 at 333.510 kb on - strand, within MIT1002_00308 at 333.545 kb on + strand, within MIT1002_00308 at 333.545 kb on + strand, within MIT1002_00308 at 333.553 kb on - strand, within MIT1002_00308 at 333.553 kb on - strand, within MIT1002_00308 at 333.556 kb on + strand, within MIT1002_00308 at 333.564 kb on - strand, within MIT1002_00308 at 333.602 kb on - strand, within MIT1002_00308 at 333.649 kb on + strand, within MIT1002_00308 at 333.758 kb on + strand, within MIT1002_00308 at 333.762 kb on + strand, within MIT1002_00308 at 333.762 kb on + strand, within MIT1002_00308 at 333.765 kb on + strand, within MIT1002_00308 at 333.766 kb on - strand, within MIT1002_00308 at 333.766 kb on - strand, within MIT1002_00308 at 333.766 kb on - strand, within MIT1002_00308 at 333.766 kb on - strand, within MIT1002_00308 at 333.770 kb on - strand, within MIT1002_00308
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5 remove 331,005 - MIT1002_00305 0.71 -0.2 331,005 - MIT1002_00305 0.71 +0.3 331,019 + MIT1002_00305 0.73 +0.7 331,138 + MIT1002_00305 0.89 -0.9 331,359 - +1.6 331,379 + -0.6 331,379 + +3.0 331,387 - -0.2 331,389 - +1.3 331,389 - +1.5 331,401 - +1.0 331,422 - +1.3 331,426 + +1.0 331,439 - +0.3 331,483 - +0.8 331,522 + -1.4 331,558 - -0.1 331,639 + +0.5 331,724 + MIT1002_00306 0.34 -0.2 331,779 + MIT1002_00306 0.52 -0.7 331,911 + +2.3 331,923 + +0.6 331,923 + +0.6 331,935 + +1.0 331,973 - +0.5 332,036 - -1.2 332,036 - -0.3 332,070 - -2.1 332,078 - -1.5 332,119 + MIT1002_00307 0.15 +0.4 332,133 + MIT1002_00307 0.17 +0.3 332,219 - MIT1002_00307 0.27 +1.3 332,220 - MIT1002_00307 0.28 +0.5 332,234 - MIT1002_00307 0.29 -1.5 332,237 + MIT1002_00307 0.30 +1.1 332,245 - MIT1002_00307 0.31 -0.8 332,288 - MIT1002_00307 0.36 -0.5 332,298 - MIT1002_00307 0.37 +0.7 332,304 - MIT1002_00307 0.38 -0.6 332,448 - MIT1002_00307 0.56 +0.3 332,499 + MIT1002_00307 0.62 -0.8 332,507 - MIT1002_00307 0.63 -1.6 332,526 - MIT1002_00307 0.65 -0.4 332,623 - MIT1002_00307 0.77 +1.6 332,672 - MIT1002_00307 0.84 -0.3 332,696 + MIT1002_00307 0.86 -0.0 332,704 - MIT1002_00307 0.87 +2.0 332,734 + -1.7 332,781 - -0.9 332,899 + -0.7 332,908 - +0.7 332,919 - -0.2 332,927 - -0.0 332,935 + MIT1002_00308 0.10 -0.4 332,943 - MIT1002_00308 0.11 +0.6 332,943 - MIT1002_00308 0.11 -0.2 332,958 + MIT1002_00308 0.12 -0.5 332,966 - MIT1002_00308 0.12 +1.1 332,991 + MIT1002_00308 0.14 -1.1 332,991 + MIT1002_00308 0.14 +0.1 332,994 - MIT1002_00308 0.14 +0.3 332,999 - MIT1002_00308 0.15 +0.2 332,999 - MIT1002_00308 0.15 +1.8 333,111 - MIT1002_00308 0.22 -0.7 333,113 + MIT1002_00308 0.23 +0.4 333,113 + MIT1002_00308 0.23 -1.5 333,121 - MIT1002_00308 0.23 -0.6 333,121 - MIT1002_00308 0.23 +1.0 333,124 + MIT1002_00308 0.23 +0.2 333,143 + MIT1002_00308 0.25 +0.7 333,143 + MIT1002_00308 0.25 -0.7 333,143 + MIT1002_00308 0.25 -0.8 333,148 + MIT1002_00308 0.25 +0.1 333,149 - MIT1002_00308 0.25 -1.5 333,149 - MIT1002_00308 0.25 -2.7 333,149 - MIT1002_00308 0.25 -2.0 333,151 - MIT1002_00308 0.25 -0.3 333,151 - MIT1002_00308 0.25 -0.3 333,161 - MIT1002_00308 0.26 -0.4 333,177 - MIT1002_00308 0.27 -2.0 333,199 - MIT1002_00308 0.29 +0.4 333,226 - MIT1002_00308 0.30 -0.2 333,240 + MIT1002_00308 0.31 -1.9 333,240 + MIT1002_00308 0.31 +0.2 333,240 + MIT1002_00308 0.31 +0.7 333,246 + MIT1002_00308 0.32 -0.7 333,246 + MIT1002_00308 0.32 +0.7 333,246 + MIT1002_00308 0.32 +0.6 333,246 + MIT1002_00308 0.32 -0.5 333,246 + MIT1002_00308 0.32 +0.3 333,246 + MIT1002_00308 0.32 -2.0 333,246 + MIT1002_00308 0.32 +0.9 333,246 + MIT1002_00308 0.32 -0.3 333,253 - MIT1002_00308 0.32 +2.4 333,254 - MIT1002_00308 0.32 -0.8 333,254 - MIT1002_00308 0.32 -0.5 333,271 + MIT1002_00308 0.34 -0.4 333,271 + MIT1002_00308 0.34 -1.2 333,271 - MIT1002_00308 0.34 -0.1 333,271 - MIT1002_00308 0.34 -1.9 333,337 - MIT1002_00308 0.38 -1.3 333,371 + MIT1002_00308 0.40 -0.3 333,379 - MIT1002_00308 0.41 -0.2 333,381 + MIT1002_00308 0.41 +0.4 333,381 + MIT1002_00308 0.41 -0.1 333,381 + MIT1002_00308 0.41 -0.0 333,381 + MIT1002_00308 0.41 -0.3 333,381 + MIT1002_00308 0.41 -0.1 333,381 + MIT1002_00308 0.41 +0.3 333,381 + MIT1002_00308 0.41 -0.1 333,386 + MIT1002_00308 0.42 +0.8 333,386 + MIT1002_00308 0.42 +2.3 333,386 + MIT1002_00308 0.42 +0.6 333,387 + MIT1002_00308 0.42 -0.7 333,388 + MIT1002_00308 0.42 +1.3 333,389 + MIT1002_00308 0.42 -2.4 333,389 - MIT1002_00308 0.42 -0.0 333,389 - MIT1002_00308 0.42 -3.0 333,389 - MIT1002_00308 0.42 -0.3 333,389 - MIT1002_00308 0.42 +1.0 333,389 - MIT1002_00308 0.42 -0.1 333,389 - MIT1002_00308 0.42 +0.7 333,389 - MIT1002_00308 0.42 +1.1 333,389 - MIT1002_00308 0.42 -2.6 333,393 + MIT1002_00308 0.42 -0.5 333,393 + MIT1002_00308 0.42 -0.2 333,393 + MIT1002_00308 0.42 -1.0 333,394 - MIT1002_00308 0.42 +0.6 333,395 - MIT1002_00308 0.42 -2.7 333,395 - MIT1002_00308 0.42 +0.4 333,401 - MIT1002_00308 0.43 -0.4 333,401 - MIT1002_00308 0.43 -0.2 333,401 - MIT1002_00308 0.43 +0.6 333,409 + MIT1002_00308 0.43 -0.6 333,409 + MIT1002_00308 0.43 -0.8 333,409 + MIT1002_00308 0.43 -1.8 333,409 + MIT1002_00308 0.43 -1.1 333,409 + MIT1002_00308 0.43 +0.9 333,409 + MIT1002_00308 0.43 -1.5 333,411 - MIT1002_00308 0.43 +0.1 333,417 - MIT1002_00308 0.44 +0.5 333,417 - MIT1002_00308 0.44 +1.0 333,432 + MIT1002_00308 0.45 +0.1 333,440 - MIT1002_00308 0.45 +0.9 333,440 - MIT1002_00308 0.45 -0.0 333,448 - MIT1002_00308 0.46 -0.2 333,455 - MIT1002_00308 0.46 +1.0 333,510 - MIT1002_00308 0.50 -0.6 333,545 + MIT1002_00308 0.53 +0.7 333,545 + MIT1002_00308 0.53 -0.4 333,553 - MIT1002_00308 0.53 +0.7 333,553 - MIT1002_00308 0.53 -0.8 333,556 + MIT1002_00308 0.53 +0.5 333,564 - MIT1002_00308 0.54 +2.4 333,602 - MIT1002_00308 0.57 +0.3 333,649 + MIT1002_00308 0.60 -1.5 333,758 + MIT1002_00308 0.67 +0.2 333,762 + MIT1002_00308 0.68 -0.5 333,762 + MIT1002_00308 0.68 -0.7 333,765 + MIT1002_00308 0.68 -1.1 333,766 - MIT1002_00308 0.68 -1.3 333,766 - MIT1002_00308 0.68 -2.4 333,766 - MIT1002_00308 0.68 +1.3 333,766 - MIT1002_00308 0.68 +1.5 333,770 - MIT1002_00308 0.68 +0.6
Or see this region's nucleotide sequence