Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00284 and MIT1002_00285 are separated by 9 nucleotides MIT1002_00285 and MIT1002_00286 are separated by 46 nucleotides MIT1002_00286 and MIT1002_00287 overlap by 11 nucleotides MIT1002_00287 and MIT1002_00288 are separated by 10 nucleotides MIT1002_00288 and MIT1002_00289 are separated by 49 nucleotides MIT1002_00289 and MIT1002_00290 are separated by 75 nucleotides
MIT1002_00284: MIT1002_00284 - Copper-exporting P-type ATPase A, at 308,866 to 311,214
_00284
MIT1002_00285: MIT1002_00285 - hypothetical protein, at 311,224 to 311,580
_00285
MIT1002_00286: MIT1002_00286 - hypothetical protein, at 311,627 to 311,950
_00286
MIT1002_00287: MIT1002_00287 - Putative protein-S-isoprenylcysteine methyltransferase, at 311,940 to 312,593
_00287
MIT1002_00288: MIT1002_00288 - hypothetical protein, at 312,604 to 313,056
_00288
MIT1002_00289: MIT1002_00289 - hypothetical protein, at 313,106 to 313,474
_00289
MIT1002_00290: MIT1002_00290 - hypothetical protein, at 313,550 to 313,732
_00290
Position (kb) 311
312
313 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 310.973 kb on + strand, within MIT1002_00284 at 310.973 kb on + strand, within MIT1002_00284 at 310.973 kb on + strand, within MIT1002_00284 at 310.975 kb on + strand, within MIT1002_00284 at 310.975 kb on + strand, within MIT1002_00284 at 310.975 kb on + strand, within MIT1002_00284 at 310.975 kb on + strand, within MIT1002_00284 at 310.975 kb on + strand, within MIT1002_00284 at 310.983 kb on - strand at 311.009 kb on + strand at 311.009 kb on + strand at 311.009 kb on + strand at 311.009 kb on + strand at 311.009 kb on + strand at 311.009 kb on + strand at 311.012 kb on - strand at 311.017 kb on - strand at 311.017 kb on - strand at 311.017 kb on - strand at 311.017 kb on - strand at 311.017 kb on - strand at 311.017 kb on - strand at 311.027 kb on - strand at 311.113 kb on + strand at 311.115 kb on + strand at 311.115 kb on + strand at 311.123 kb on - strand at 311.123 kb on - strand at 311.177 kb on - strand at 311.177 kb on - strand at 311.249 kb on + strand at 311.249 kb on + strand at 311.257 kb on - strand at 311.257 kb on - strand at 311.324 kb on + strand, within MIT1002_00285 at 311.334 kb on - strand, within MIT1002_00285 at 311.356 kb on - strand, within MIT1002_00285 at 311.397 kb on + strand, within MIT1002_00285 at 311.405 kb on - strand, within MIT1002_00285 at 311.417 kb on + strand, within MIT1002_00285 at 311.417 kb on + strand, within MIT1002_00285 at 311.429 kb on + strand, within MIT1002_00285 at 311.476 kb on + strand, within MIT1002_00285 at 311.497 kb on - strand, within MIT1002_00285 at 311.507 kb on - strand, within MIT1002_00285 at 311.624 kb on + strand at 311.683 kb on - strand, within MIT1002_00286 at 311.698 kb on + strand, within MIT1002_00286 at 311.699 kb on + strand, within MIT1002_00286 at 311.748 kb on - strand, within MIT1002_00286 at 311.802 kb on - strand, within MIT1002_00286 at 311.830 kb on - strand, within MIT1002_00286 at 311.895 kb on + strand, within MIT1002_00286 at 311.895 kb on + strand, within MIT1002_00286 at 311.895 kb on + strand, within MIT1002_00286 at 311.895 kb on + strand, within MIT1002_00286 at 311.895 kb on + strand, within MIT1002_00286 at 311.895 kb on + strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.908 kb on - strand, within MIT1002_00286 at 311.908 kb on - strand, within MIT1002_00286 at 311.963 kb on - strand at 312.050 kb on - strand, within MIT1002_00287 at 312.054 kb on - strand, within MIT1002_00287 at 312.060 kb on - strand, within MIT1002_00287 at 312.149 kb on - strand, within MIT1002_00287 at 312.234 kb on + strand, within MIT1002_00287 at 312.242 kb on - strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.387 kb on - strand, within MIT1002_00287 at 312.415 kb on + strand, within MIT1002_00287 at 312.415 kb on + strand, within MIT1002_00287 at 312.423 kb on + strand, within MIT1002_00287 at 312.423 kb on - strand, within MIT1002_00287 at 312.423 kb on - strand, within MIT1002_00287 at 312.423 kb on - strand, within MIT1002_00287 at 312.423 kb on - strand, within MIT1002_00287 at 312.494 kb on + strand, within MIT1002_00287 at 312.621 kb on - strand at 312.651 kb on - strand, within MIT1002_00288 at 312.675 kb on - strand, within MIT1002_00288 at 312.712 kb on - strand, within MIT1002_00288 at 312.737 kb on + strand, within MIT1002_00288 at 312.840 kb on - strand, within MIT1002_00288 at 312.865 kb on + strand, within MIT1002_00288 at 312.910 kb on - strand, within MIT1002_00288 at 312.931 kb on - strand, within MIT1002_00288 at 312.931 kb on - strand, within MIT1002_00288 at 312.970 kb on + strand, within MIT1002_00288 at 313.135 kb on - strand at 313.208 kb on - strand, within MIT1002_00289 at 313.278 kb on - strand, within MIT1002_00289 at 313.284 kb on + strand, within MIT1002_00289 at 313.284 kb on + strand, within MIT1002_00289 at 313.292 kb on - strand, within MIT1002_00289 at 313.292 kb on - strand, within MIT1002_00289 at 313.327 kb on + strand, within MIT1002_00289 at 313.428 kb on - strand, within MIT1002_00289 at 313.429 kb on - strand, within MIT1002_00289 at 313.449 kb on + strand at 313.451 kb on - strand at 313.462 kb on - strand at 313.496 kb on + strand at 313.496 kb on + strand at 313.540 kb on + strand at 313.540 kb on + strand at 313.540 kb on + strand at 313.545 kb on + strand at 313.545 kb on + strand at 313.548 kb on + strand at 313.548 kb on - strand at 313.548 kb on - strand at 313.550 kb on + strand at 313.558 kb on - strand at 313.578 kb on + strand, within MIT1002_00290 at 313.578 kb on + strand, within MIT1002_00290 at 313.578 kb on + strand, within MIT1002_00290
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5 remove 310,973 + MIT1002_00284 0.90 -1.2 310,973 + MIT1002_00284 0.90 +1.3 310,973 + MIT1002_00284 0.90 +0.2 310,975 + MIT1002_00284 0.90 -1.4 310,975 + MIT1002_00284 0.90 -2.8 310,975 + MIT1002_00284 0.90 -0.6 310,975 + MIT1002_00284 0.90 -0.2 310,975 + MIT1002_00284 0.90 -1.3 310,983 - -0.6 311,009 + -0.3 311,009 + -2.4 311,009 + +0.6 311,009 + +1.6 311,009 + +1.6 311,009 + -0.1 311,012 - -1.5 311,017 - -0.3 311,017 - -0.7 311,017 - +1.6 311,017 - -0.5 311,017 - -0.3 311,017 - +1.0 311,027 - +0.2 311,113 + -0.4 311,115 + +0.9 311,115 + -1.1 311,123 - +0.8 311,123 - -0.8 311,177 - +0.5 311,177 - +0.4 311,249 + -0.2 311,249 + -1.6 311,257 - -2.5 311,257 - -1.0 311,324 + MIT1002_00285 0.28 +1.3 311,334 - MIT1002_00285 0.31 +0.2 311,356 - MIT1002_00285 0.37 +0.5 311,397 + MIT1002_00285 0.48 -0.6 311,405 - MIT1002_00285 0.51 -0.4 311,417 + MIT1002_00285 0.54 +1.6 311,417 + MIT1002_00285 0.54 -1.7 311,429 + MIT1002_00285 0.57 -0.4 311,476 + MIT1002_00285 0.71 +1.8 311,497 - MIT1002_00285 0.76 -1.1 311,507 - MIT1002_00285 0.79 +0.7 311,624 + -0.5 311,683 - MIT1002_00286 0.17 -1.4 311,698 + MIT1002_00286 0.22 +1.7 311,699 + MIT1002_00286 0.22 +0.2 311,748 - MIT1002_00286 0.37 +1.8 311,802 - MIT1002_00286 0.54 -0.8 311,830 - MIT1002_00286 0.63 +0.9 311,895 + MIT1002_00286 0.83 -0.5 311,895 + MIT1002_00286 0.83 -1.1 311,895 + MIT1002_00286 0.83 +0.9 311,895 + MIT1002_00286 0.83 +2.1 311,895 + MIT1002_00286 0.83 +0.4 311,895 + MIT1002_00286 0.83 +0.4 311,903 - MIT1002_00286 0.85 -0.7 311,903 - MIT1002_00286 0.85 +1.0 311,903 - MIT1002_00286 0.85 +0.3 311,903 - MIT1002_00286 0.85 -0.6 311,903 - MIT1002_00286 0.85 +2.2 311,903 - MIT1002_00286 0.85 -1.1 311,903 - MIT1002_00286 0.85 +0.3 311,908 - MIT1002_00286 0.87 -1.8 311,908 - MIT1002_00286 0.87 -2.1 311,963 - -0.8 312,050 - MIT1002_00287 0.17 -0.8 312,054 - MIT1002_00287 0.17 +0.3 312,060 - MIT1002_00287 0.18 -2.0 312,149 - MIT1002_00287 0.32 +1.8 312,234 + MIT1002_00287 0.45 +1.2 312,242 - MIT1002_00287 0.46 -2.1 312,300 + MIT1002_00287 0.55 -2.6 312,300 + MIT1002_00287 0.55 -1.6 312,300 + MIT1002_00287 0.55 -0.9 312,300 + MIT1002_00287 0.55 -1.6 312,300 + MIT1002_00287 0.55 -0.7 312,300 + MIT1002_00287 0.55 -1.0 312,300 + MIT1002_00287 0.55 -0.5 312,300 + MIT1002_00287 0.55 +0.4 312,300 + MIT1002_00287 0.55 +0.0 312,300 + MIT1002_00287 0.55 +0.5 312,300 + MIT1002_00287 0.55 +0.6 312,300 + MIT1002_00287 0.55 +2.0 312,300 + MIT1002_00287 0.55 -0.8 312,300 + MIT1002_00287 0.55 -0.2 312,300 + MIT1002_00287 0.55 +1.0 312,300 + MIT1002_00287 0.55 -0.1 312,300 + MIT1002_00287 0.55 +0.1 312,300 + MIT1002_00287 0.55 -0.7 312,300 + MIT1002_00287 0.55 +0.8 312,300 + MIT1002_00287 0.55 -0.4 312,300 + MIT1002_00287 0.55 -0.1 312,300 + MIT1002_00287 0.55 -0.2 312,300 + MIT1002_00287 0.55 -2.1 312,300 + MIT1002_00287 0.55 -0.2 312,300 + MIT1002_00287 0.55 +0.2 312,300 + MIT1002_00287 0.55 -0.1 312,300 + MIT1002_00287 0.55 +0.2 312,300 + MIT1002_00287 0.55 -1.6 312,300 + MIT1002_00287 0.55 -0.2 312,300 + MIT1002_00287 0.55 +1.3 312,300 + MIT1002_00287 0.55 -2.2 312,300 + MIT1002_00287 0.55 -0.3 312,300 + MIT1002_00287 0.55 +1.2 312,300 + MIT1002_00287 0.55 +0.3 312,300 + MIT1002_00287 0.55 +0.7 312,300 + MIT1002_00287 0.55 -1.1 312,300 + MIT1002_00287 0.55 -0.4 312,308 - MIT1002_00287 0.56 -1.5 312,308 - MIT1002_00287 0.56 +0.2 312,308 - MIT1002_00287 0.56 +0.2 312,308 - MIT1002_00287 0.56 -2.4 312,308 - MIT1002_00287 0.56 -0.1 312,308 - MIT1002_00287 0.56 -0.3 312,308 - MIT1002_00287 0.56 -1.4 312,308 - MIT1002_00287 0.56 -1.6 312,308 - MIT1002_00287 0.56 -2.0 312,308 - MIT1002_00287 0.56 -1.5 312,308 - MIT1002_00287 0.56 -0.1 312,308 - MIT1002_00287 0.56 -0.9 312,308 - MIT1002_00287 0.56 +0.8 312,308 - MIT1002_00287 0.56 -1.4 312,308 - MIT1002_00287 0.56 -1.5 312,308 - MIT1002_00287 0.56 +1.3 312,308 - MIT1002_00287 0.56 -1.1 312,308 - MIT1002_00287 0.56 -0.1 312,308 - MIT1002_00287 0.56 -1.2 312,308 - MIT1002_00287 0.56 -0.6 312,308 - MIT1002_00287 0.56 -1.4 312,308 - MIT1002_00287 0.56 +0.0 312,308 - MIT1002_00287 0.56 -3.1 312,308 - MIT1002_00287 0.56 -0.1 312,308 - MIT1002_00287 0.56 -0.7 312,308 - MIT1002_00287 0.56 -0.6 312,308 - MIT1002_00287 0.56 +0.0 312,308 - MIT1002_00287 0.56 -0.4 312,308 - MIT1002_00287 0.56 -0.7 312,387 - MIT1002_00287 0.68 +1.7 312,415 + MIT1002_00287 0.73 +1.7 312,415 + MIT1002_00287 0.73 -1.7 312,423 + MIT1002_00287 0.74 -0.5 312,423 - MIT1002_00287 0.74 +0.7 312,423 - MIT1002_00287 0.74 +1.0 312,423 - MIT1002_00287 0.74 -0.2 312,423 - MIT1002_00287 0.74 -0.4 312,494 + MIT1002_00287 0.85 -1.8 312,621 - -0.9 312,651 - MIT1002_00288 0.10 -0.2 312,675 - MIT1002_00288 0.16 +0.1 312,712 - MIT1002_00288 0.24 -2.0 312,737 + MIT1002_00288 0.29 -0.4 312,840 - MIT1002_00288 0.52 -1.7 312,865 + MIT1002_00288 0.58 -0.3 312,910 - MIT1002_00288 0.68 -0.5 312,931 - MIT1002_00288 0.72 +0.4 312,931 - MIT1002_00288 0.72 -0.0 312,970 + MIT1002_00288 0.81 +0.1 313,135 - +1.2 313,208 - MIT1002_00289 0.28 +0.0 313,278 - MIT1002_00289 0.47 -0.6 313,284 + MIT1002_00289 0.48 -1.3 313,284 + MIT1002_00289 0.48 -0.8 313,292 - MIT1002_00289 0.50 -0.0 313,292 - MIT1002_00289 0.50 -0.9 313,327 + MIT1002_00289 0.60 -0.4 313,428 - MIT1002_00289 0.87 -0.4 313,429 - MIT1002_00289 0.88 +3.2 313,449 + -0.2 313,451 - -0.9 313,462 - +1.0 313,496 + +2.4 313,496 + +1.2 313,540 + +0.1 313,540 + +1.3 313,540 + -1.2 313,545 + +0.1 313,545 + +0.5 313,548 + -0.6 313,548 - +0.2 313,548 - +0.6 313,550 + -0.9 313,558 - -0.4 313,578 + MIT1002_00290 0.15 -0.3 313,578 + MIT1002_00290 0.15 -0.1 313,578 + MIT1002_00290 0.15 -1.2
Or see this region's nucleotide sequence