Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00270

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00268 and MIT1002_00269 overlap by 1 nucleotidesMIT1002_00269 and MIT1002_00270 overlap by 4 nucleotidesMIT1002_00270 and MIT1002_00271 are separated by 12 nucleotides MIT1002_00268: MIT1002_00268 - 1,2-phenylacetyl-CoA epoxidase, subunit E, at 293,624 to 295,558 _00268 MIT1002_00269: MIT1002_00269 - hypothetical protein, at 295,558 to 296,316 _00269 MIT1002_00270: MIT1002_00270 - Class III cytochrome C family protein, at 296,313 to 297,107 _00270 MIT1002_00271: MIT1002_00271 - hypothetical protein, at 297,120 to 298,343 _00271 Position (kb) 296 297 298Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 295.320 kb on - strand, within MIT1002_00268at 295.328 kb on + strand, within MIT1002_00268at 295.328 kb on + strand, within MIT1002_00268at 295.351 kb on - strand, within MIT1002_00268at 295.351 kb on - strand, within MIT1002_00268at 295.358 kb on + strand, within MIT1002_00268at 295.358 kb on + strand, within MIT1002_00268at 295.377 kb on + strandat 295.388 kb on + strandat 295.433 kb on - strandat 295.446 kb on + strandat 295.475 kb on + strandat 295.508 kb on + strandat 295.546 kb on + strandat 295.587 kb on - strandat 295.589 kb on + strandat 295.597 kb on + strandat 295.678 kb on + strand, within MIT1002_00269at 295.678 kb on + strand, within MIT1002_00269at 295.686 kb on - strand, within MIT1002_00269at 295.686 kb on - strand, within MIT1002_00269at 295.686 kb on - strand, within MIT1002_00269at 295.802 kb on + strand, within MIT1002_00269at 295.810 kb on + strand, within MIT1002_00269at 295.815 kb on - strand, within MIT1002_00269at 295.815 kb on - strand, within MIT1002_00269at 295.833 kb on + strand, within MIT1002_00269at 295.841 kb on - strand, within MIT1002_00269at 295.942 kb on - strand, within MIT1002_00269at 296.078 kb on - strand, within MIT1002_00269at 296.078 kb on - strand, within MIT1002_00269at 296.078 kb on - strand, within MIT1002_00269at 296.134 kb on + strand, within MIT1002_00269at 296.170 kb on + strand, within MIT1002_00269at 296.178 kb on - strand, within MIT1002_00269at 296.178 kb on - strand, within MIT1002_00269at 296.205 kb on + strand, within MIT1002_00269at 296.205 kb on + strand, within MIT1002_00269at 296.205 kb on + strand, within MIT1002_00269at 296.205 kb on + strand, within MIT1002_00269at 296.206 kb on - strand, within MIT1002_00269at 296.302 kb on - strandat 296.307 kb on - strandat 296.309 kb on + strandat 296.309 kb on + strandat 296.358 kb on - strandat 296.385 kb on + strandat 296.385 kb on + strandat 296.393 kb on - strand, within MIT1002_00270at 296.445 kb on + strand, within MIT1002_00270at 296.495 kb on - strand, within MIT1002_00270at 296.617 kb on - strand, within MIT1002_00270at 296.758 kb on + strand, within MIT1002_00270at 296.760 kb on + strand, within MIT1002_00270at 296.773 kb on - strand, within MIT1002_00270at 296.781 kb on + strand, within MIT1002_00270at 296.786 kb on + strand, within MIT1002_00270at 296.787 kb on - strand, within MIT1002_00270at 296.836 kb on - strand, within MIT1002_00270at 296.863 kb on - strand, within MIT1002_00270at 296.876 kb on + strand, within MIT1002_00270at 296.876 kb on + strand, within MIT1002_00270at 296.889 kb on + strand, within MIT1002_00270at 297.043 kb on + strandat 297.101 kb on + strandat 297.101 kb on + strandat 297.101 kb on + strandat 297.109 kb on - strandat 297.148 kb on + strandat 297.168 kb on + strandat 297.176 kb on - strandat 297.222 kb on - strandat 297.299 kb on + strand, within MIT1002_00271at 297.299 kb on + strand, within MIT1002_00271at 297.299 kb on + strand, within MIT1002_00271at 297.299 kb on + strand, within MIT1002_00271at 297.299 kb on + strand, within MIT1002_00271at 297.299 kb on + strand, within MIT1002_00271at 297.307 kb on - strand, within MIT1002_00271at 297.307 kb on - strand, within MIT1002_00271at 297.317 kb on - strand, within MIT1002_00271at 297.353 kb on + strand, within MIT1002_00271at 297.447 kb on + strand, within MIT1002_00271at 297.539 kb on + strand, within MIT1002_00271at 297.539 kb on + strand, within MIT1002_00271at 297.581 kb on + strand, within MIT1002_00271at 297.589 kb on - strand, within MIT1002_00271at 297.589 kb on - strand, within MIT1002_00271at 297.607 kb on + strand, within MIT1002_00271at 297.615 kb on - strand, within MIT1002_00271at 297.622 kb on - strand, within MIT1002_00271at 297.636 kb on - strand, within MIT1002_00271at 297.694 kb on + strand, within MIT1002_00271at 297.744 kb on + strand, within MIT1002_00271at 297.752 kb on - strand, within MIT1002_00271at 297.774 kb on + strand, within MIT1002_00271at 297.789 kb on - strand, within MIT1002_00271at 297.796 kb on + strand, within MIT1002_00271at 297.803 kb on + strand, within MIT1002_00271at 297.806 kb on + strand, within MIT1002_00271at 297.817 kb on + strand, within MIT1002_00271at 297.817 kb on + strand, within MIT1002_00271at 297.817 kb on + strand, within MIT1002_00271at 297.825 kb on - strand, within MIT1002_00271at 297.825 kb on - strand, within MIT1002_00271at 297.825 kb on - strand, within MIT1002_00271at 297.882 kb on - strand, within MIT1002_00271at 297.888 kb on + strand, within MIT1002_00271at 297.888 kb on + strand, within MIT1002_00271at 297.888 kb on + strand, within MIT1002_00271at 297.896 kb on - strand, within MIT1002_00271at 297.948 kb on + strand, within MIT1002_00271at 297.955 kb on + strand, within MIT1002_00271at 297.955 kb on + strand, within MIT1002_00271at 298.034 kb on - strand, within MIT1002_00271at 298.034 kb on - strand, within MIT1002_00271

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
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295,320 - MIT1002_00268 0.88 -1.5
295,328 + MIT1002_00268 0.88 -0.2
295,328 + MIT1002_00268 0.88 -0.4
295,351 - MIT1002_00268 0.89 +0.3
295,351 - MIT1002_00268 0.89 -0.3
295,358 + MIT1002_00268 0.90 -0.8
295,358 + MIT1002_00268 0.90 -1.2
295,377 + -0.6
295,388 + +1.2
295,433 - -0.0
295,446 + -1.1
295,475 + +0.6
295,508 + +4.2
295,546 + +2.0
295,587 - +0.0
295,589 + -0.2
295,597 + +1.3
295,678 + MIT1002_00269 0.16 -2.0
295,678 + MIT1002_00269 0.16 +1.5
295,686 - MIT1002_00269 0.17 -0.0
295,686 - MIT1002_00269 0.17 +2.6
295,686 - MIT1002_00269 0.17 -1.5
295,802 + MIT1002_00269 0.32 +0.7
295,810 + MIT1002_00269 0.33 -1.1
295,815 - MIT1002_00269 0.34 -0.6
295,815 - MIT1002_00269 0.34 +2.6
295,833 + MIT1002_00269 0.36 -1.7
295,841 - MIT1002_00269 0.37 -0.4
295,942 - MIT1002_00269 0.51 -0.0
296,078 - MIT1002_00269 0.69 -1.5
296,078 - MIT1002_00269 0.69 +0.3
296,078 - MIT1002_00269 0.69 -1.5
296,134 + MIT1002_00269 0.76 -0.2
296,170 + MIT1002_00269 0.81 -3.8
296,178 - MIT1002_00269 0.82 -2.9
296,178 - MIT1002_00269 0.82 +0.7
296,205 + MIT1002_00269 0.85 +0.7
296,205 + MIT1002_00269 0.85 +0.1
296,205 + MIT1002_00269 0.85 -1.1
296,205 + MIT1002_00269 0.85 -1.2
296,206 - MIT1002_00269 0.85 -0.2
296,302 - +1.0
296,307 - -1.8
296,309 + +0.6
296,309 + -0.3
296,358 - -0.7
296,385 + +0.8
296,385 + +1.0
296,393 - MIT1002_00270 0.10 +0.7
296,445 + MIT1002_00270 0.17 -0.6
296,495 - MIT1002_00270 0.23 +0.5
296,617 - MIT1002_00270 0.38 +3.3
296,758 + MIT1002_00270 0.56 -1.5
296,760 + MIT1002_00270 0.56 +0.5
296,773 - MIT1002_00270 0.58 +1.0
296,781 + MIT1002_00270 0.59 +0.0
296,786 + MIT1002_00270 0.59 +0.6
296,787 - MIT1002_00270 0.60 +0.4
296,836 - MIT1002_00270 0.66 +0.9
296,863 - MIT1002_00270 0.69 -0.3
296,876 + MIT1002_00270 0.71 +2.3
296,876 + MIT1002_00270 0.71 +0.6
296,889 + MIT1002_00270 0.72 -0.2
297,043 + +0.7
297,101 + +0.0
297,101 + +0.8
297,101 + -0.4
297,109 - -0.5
297,148 + +1.0
297,168 + -2.3
297,176 - -0.2
297,222 - +0.1
297,299 + MIT1002_00271 0.15 +2.8
297,299 + MIT1002_00271 0.15 -0.9
297,299 + MIT1002_00271 0.15 +1.5
297,299 + MIT1002_00271 0.15 +2.4
297,299 + MIT1002_00271 0.15 +2.5
297,299 + MIT1002_00271 0.15 +1.9
297,307 - MIT1002_00271 0.15 +0.4
297,307 - MIT1002_00271 0.15 +1.5
297,317 - MIT1002_00271 0.16 +0.4
297,353 + MIT1002_00271 0.19 -1.1
297,447 + MIT1002_00271 0.27 -0.7
297,539 + MIT1002_00271 0.34 +1.2
297,539 + MIT1002_00271 0.34 -0.2
297,581 + MIT1002_00271 0.38 +1.9
297,589 - MIT1002_00271 0.38 +0.2
297,589 - MIT1002_00271 0.38 -0.8
297,607 + MIT1002_00271 0.40 -0.4
297,615 - MIT1002_00271 0.40 -0.3
297,622 - MIT1002_00271 0.41 -3.8
297,636 - MIT1002_00271 0.42 +0.1
297,694 + MIT1002_00271 0.47 -0.6
297,744 + MIT1002_00271 0.51 +0.8
297,752 - MIT1002_00271 0.52 +0.4
297,774 + MIT1002_00271 0.53 +0.1
297,789 - MIT1002_00271 0.55 +0.4
297,796 + MIT1002_00271 0.55 +1.2
297,803 + MIT1002_00271 0.56 +0.2
297,806 + MIT1002_00271 0.56 -1.2
297,817 + MIT1002_00271 0.57 -1.5
297,817 + MIT1002_00271 0.57 +0.1
297,817 + MIT1002_00271 0.57 +0.2
297,825 - MIT1002_00271 0.58 +1.7
297,825 - MIT1002_00271 0.58 -1.6
297,825 - MIT1002_00271 0.58 +0.6
297,882 - MIT1002_00271 0.62 +2.1
297,888 + MIT1002_00271 0.63 +0.5
297,888 + MIT1002_00271 0.63 -0.3
297,888 + MIT1002_00271 0.63 -1.0
297,896 - MIT1002_00271 0.63 -0.2
297,948 + MIT1002_00271 0.68 -1.3
297,955 + MIT1002_00271 0.68 -1.9
297,955 + MIT1002_00271 0.68 +0.3
298,034 - MIT1002_00271 0.75 -0.5
298,034 - MIT1002_00271 0.75 -0.6

Or see this region's nucleotide sequence