Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00266

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00263 and MIT1002_00264 are separated by 15 nucleotidesMIT1002_00264 and MIT1002_00265 are separated by 96 nucleotidesMIT1002_00265 and MIT1002_00266 are separated by 72 nucleotidesMIT1002_00266 and MIT1002_00267 are separated by 28 nucleotidesMIT1002_00267 and MIT1002_00268 overlap by 4 nucleotides MIT1002_00263: MIT1002_00263 - hypothetical protein, at 291,272 to 291,487 _00263 MIT1002_00264: MIT1002_00264 - putative heme-binding domain protein, at 291,503 to 291,796 _00264 MIT1002_00265: MIT1002_00265 - hypothetical protein, at 291,893 to 292,324 _00265 MIT1002_00266: MIT1002_00266 - hypothetical protein, at 292,397 to 292,753 _00266 MIT1002_00267: MIT1002_00267 - hypothetical protein, at 292,782 to 293,627 _00267 MIT1002_00268: MIT1002_00268 - 1,2-phenylacetyl-CoA epoxidase, subunit E, at 293,624 to 295,558 _00268 Position (kb) 292 293Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 291.402 kb on - strand, within MIT1002_00263at 291.402 kb on - strand, within MIT1002_00263at 291.402 kb on - strand, within MIT1002_00263at 291.402 kb on - strand, within MIT1002_00263at 291.402 kb on - strand, within MIT1002_00263at 291.412 kb on - strand, within MIT1002_00263at 291.440 kb on - strand, within MIT1002_00263at 291.482 kb on + strandat 291.482 kb on + strandat 291.490 kb on - strandat 291.490 kb on - strandat 291.561 kb on + strand, within MIT1002_00264at 291.594 kb on + strand, within MIT1002_00264at 291.595 kb on - strand, within MIT1002_00264at 291.606 kb on + strand, within MIT1002_00264at 291.622 kb on - strand, within MIT1002_00264at 291.649 kb on + strand, within MIT1002_00264at 291.701 kb on - strand, within MIT1002_00264at 291.758 kb on - strand, within MIT1002_00264at 291.806 kb on - strandat 291.806 kb on - strandat 291.808 kb on - strandat 291.823 kb on + strandat 291.919 kb on + strandat 291.926 kb on + strandat 292.049 kb on + strand, within MIT1002_00265at 292.049 kb on + strand, within MIT1002_00265at 292.049 kb on + strand, within MIT1002_00265at 292.049 kb on + strand, within MIT1002_00265at 292.057 kb on - strand, within MIT1002_00265at 292.057 kb on - strand, within MIT1002_00265at 292.057 kb on - strand, within MIT1002_00265at 292.068 kb on - strand, within MIT1002_00265at 292.230 kb on + strand, within MIT1002_00265at 292.269 kb on + strand, within MIT1002_00265at 292.297 kb on + strandat 292.297 kb on + strandat 292.337 kb on + strandat 292.344 kb on + strandat 292.358 kb on - strandat 292.363 kb on + strandat 292.424 kb on + strandat 292.447 kb on + strand, within MIT1002_00266at 292.455 kb on - strand, within MIT1002_00266at 292.455 kb on - strand, within MIT1002_00266at 292.476 kb on - strand, within MIT1002_00266at 292.491 kb on - strand, within MIT1002_00266at 292.534 kb on - strand, within MIT1002_00266at 292.534 kb on - strand, within MIT1002_00266at 292.541 kb on + strand, within MIT1002_00266at 292.579 kb on + strand, within MIT1002_00266at 292.587 kb on - strand, within MIT1002_00266at 292.587 kb on - strand, within MIT1002_00266at 292.587 kb on - strand, within MIT1002_00266at 292.587 kb on - strand, within MIT1002_00266at 292.587 kb on - strand, within MIT1002_00266at 292.589 kb on + strand, within MIT1002_00266at 292.597 kb on - strand, within MIT1002_00266at 292.597 kb on - strand, within MIT1002_00266at 292.681 kb on - strand, within MIT1002_00266at 292.681 kb on - strand, within MIT1002_00266at 292.777 kb on - strandat 292.814 kb on - strandat 292.861 kb on - strandat 292.872 kb on + strand, within MIT1002_00267at 292.878 kb on - strand, within MIT1002_00267at 292.885 kb on + strand, within MIT1002_00267at 292.885 kb on + strand, within MIT1002_00267at 292.893 kb on - strand, within MIT1002_00267at 292.947 kb on + strand, within MIT1002_00267at 292.955 kb on - strand, within MIT1002_00267at 293.026 kb on + strand, within MIT1002_00267at 293.026 kb on + strand, within MIT1002_00267at 293.034 kb on - strand, within MIT1002_00267at 293.185 kb on + strand, within MIT1002_00267at 293.203 kb on - strand, within MIT1002_00267at 293.206 kb on - strand, within MIT1002_00267at 293.234 kb on - strand, within MIT1002_00267at 293.258 kb on - strand, within MIT1002_00267at 293.260 kb on + strand, within MIT1002_00267at 293.264 kb on + strand, within MIT1002_00267at 293.268 kb on - strand, within MIT1002_00267at 293.322 kb on - strand, within MIT1002_00267at 293.323 kb on - strand, within MIT1002_00267at 293.344 kb on - strand, within MIT1002_00267at 293.351 kb on - strand, within MIT1002_00267at 293.358 kb on + strand, within MIT1002_00267at 293.386 kb on + strand, within MIT1002_00267at 293.391 kb on + strand, within MIT1002_00267at 293.398 kb on + strand, within MIT1002_00267at 293.398 kb on + strand, within MIT1002_00267at 293.398 kb on + strand, within MIT1002_00267at 293.439 kb on + strand, within MIT1002_00267at 293.454 kb on + strand, within MIT1002_00267at 293.502 kb on + strand, within MIT1002_00267at 293.510 kb on - strand, within MIT1002_00267at 293.559 kb on + strandat 293.673 kb on + strandat 293.709 kb on + strandat 293.725 kb on - strandat 293.727 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
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291,402 - MIT1002_00263 0.60 -1.2
291,402 - MIT1002_00263 0.60 +0.7
291,402 - MIT1002_00263 0.60 -1.0
291,402 - MIT1002_00263 0.60 -2.1
291,402 - MIT1002_00263 0.60 +0.6
291,412 - MIT1002_00263 0.65 -0.8
291,440 - MIT1002_00263 0.78 +0.1
291,482 + +0.3
291,482 + +1.2
291,490 - -1.4
291,490 - -0.6
291,561 + MIT1002_00264 0.20 -0.8
291,594 + MIT1002_00264 0.31 +1.5
291,595 - MIT1002_00264 0.31 -1.2
291,606 + MIT1002_00264 0.35 +0.5
291,622 - MIT1002_00264 0.40 +1.2
291,649 + MIT1002_00264 0.50 +0.5
291,701 - MIT1002_00264 0.67 -0.7
291,758 - MIT1002_00264 0.87 -2.0
291,806 - -1.2
291,806 - +0.2
291,808 - -0.5
291,823 + -0.1
291,919 + -0.5
291,926 + -1.0
292,049 + MIT1002_00265 0.36 -1.5
292,049 + MIT1002_00265 0.36 -0.1
292,049 + MIT1002_00265 0.36 +0.7
292,049 + MIT1002_00265 0.36 +0.7
292,057 - MIT1002_00265 0.38 -2.4
292,057 - MIT1002_00265 0.38 -0.9
292,057 - MIT1002_00265 0.38 +0.9
292,068 - MIT1002_00265 0.41 +0.7
292,230 + MIT1002_00265 0.78 -0.8
292,269 + MIT1002_00265 0.87 -0.2
292,297 + +0.9
292,297 + +1.2
292,337 + +1.3
292,344 + -0.6
292,358 - +0.0
292,363 + +0.7
292,424 + -0.3
292,447 + MIT1002_00266 0.14 +1.1
292,455 - MIT1002_00266 0.16 -0.8
292,455 - MIT1002_00266 0.16 -0.5
292,476 - MIT1002_00266 0.22 -1.8
292,491 - MIT1002_00266 0.26 +0.8
292,534 - MIT1002_00266 0.38 -1.5
292,534 - MIT1002_00266 0.38 -0.6
292,541 + MIT1002_00266 0.40 +2.5
292,579 + MIT1002_00266 0.51 -3.2
292,587 - MIT1002_00266 0.53 -1.0
292,587 - MIT1002_00266 0.53 +1.5
292,587 - MIT1002_00266 0.53 -1.1
292,587 - MIT1002_00266 0.53 +0.4
292,587 - MIT1002_00266 0.53 +0.2
292,589 + MIT1002_00266 0.54 +0.9
292,597 - MIT1002_00266 0.56 +0.6
292,597 - MIT1002_00266 0.56 +0.3
292,681 - MIT1002_00266 0.80 -1.2
292,681 - MIT1002_00266 0.80 -0.4
292,777 - -1.5
292,814 - -0.8
292,861 - -1.2
292,872 + MIT1002_00267 0.11 +0.9
292,878 - MIT1002_00267 0.11 -0.9
292,885 + MIT1002_00267 0.12 -0.7
292,885 + MIT1002_00267 0.12 -0.4
292,893 - MIT1002_00267 0.13 -2.4
292,947 + MIT1002_00267 0.20 +1.1
292,955 - MIT1002_00267 0.20 +0.4
293,026 + MIT1002_00267 0.29 -2.2
293,026 + MIT1002_00267 0.29 -0.1
293,034 - MIT1002_00267 0.30 +0.4
293,185 + MIT1002_00267 0.48 +0.1
293,203 - MIT1002_00267 0.50 +0.7
293,206 - MIT1002_00267 0.50 -1.1
293,234 - MIT1002_00267 0.53 -1.8
293,258 - MIT1002_00267 0.56 -2.1
293,260 + MIT1002_00267 0.57 -1.5
293,264 + MIT1002_00267 0.57 +0.6
293,268 - MIT1002_00267 0.57 +1.5
293,322 - MIT1002_00267 0.64 -1.3
293,323 - MIT1002_00267 0.64 -0.8
293,344 - MIT1002_00267 0.66 -1.6
293,351 - MIT1002_00267 0.67 -2.2
293,358 + MIT1002_00267 0.68 -1.9
293,386 + MIT1002_00267 0.71 +0.7
293,391 + MIT1002_00267 0.72 -1.1
293,398 + MIT1002_00267 0.73 -0.2
293,398 + MIT1002_00267 0.73 -1.0
293,398 + MIT1002_00267 0.73 -1.5
293,439 + MIT1002_00267 0.78 +1.8
293,454 + MIT1002_00267 0.79 +1.4
293,502 + MIT1002_00267 0.85 -0.0
293,510 - MIT1002_00267 0.86 +0.2
293,559 + +0.6
293,673 + +1.0
293,709 + +1.0
293,725 - -1.8
293,727 - -0.2

Or see this region's nucleotide sequence