Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00134 and MIT1002_00135 are separated by 21 nucleotides MIT1002_00135 and MIT1002_00136 are separated by 56 nucleotides MIT1002_00136 and MIT1002_00137 are separated by 113 nucleotides
MIT1002_00134: MIT1002_00134 - Acriflavine resistance protein A precursor, at 143,329 to 144,474
_00134
MIT1002_00135: MIT1002_00135 - Multidrug-efflux transporter MexB, at 144,496 to 147,594
_00135
MIT1002_00136: MIT1002_00136 - Esterase/lipase, at 147,651 to 148,148
_00136
MIT1002_00137: MIT1002_00137 - Propionyl-CoA:succinate CoA transferase, at 148,262 to 150,103
_00137
Position (kb) 144
145
146
147
148 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 143.504 kb on + strand, within MIT1002_00134 at 143.504 kb on + strand, within MIT1002_00134 at 143.504 kb on + strand, within MIT1002_00134 at 143.579 kb on + strand, within MIT1002_00134 at 143.617 kb on + strand, within MIT1002_00134 at 143.638 kb on + strand, within MIT1002_00134 at 143.638 kb on + strand, within MIT1002_00134 at 143.640 kb on + strand, within MIT1002_00134 at 143.646 kb on - strand, within MIT1002_00134 at 143.646 kb on - strand, within MIT1002_00134 at 143.646 kb on - strand, within MIT1002_00134 at 143.646 kb on - strand, within MIT1002_00134 at 143.648 kb on - strand, within MIT1002_00134 at 143.682 kb on + strand, within MIT1002_00134 at 143.691 kb on - strand, within MIT1002_00134 at 143.711 kb on - strand, within MIT1002_00134 at 143.813 kb on - strand, within MIT1002_00134 at 143.855 kb on - strand, within MIT1002_00134 at 143.876 kb on + strand, within MIT1002_00134 at 143.942 kb on + strand, within MIT1002_00134 at 143.950 kb on - strand, within MIT1002_00134 at 143.950 kb on - strand, within MIT1002_00134 at 143.950 kb on - strand, within MIT1002_00134 at 143.961 kb on + strand, within MIT1002_00134 at 143.981 kb on + strand, within MIT1002_00134 at 144.010 kb on - strand, within MIT1002_00134 at 144.113 kb on + strand, within MIT1002_00134 at 144.116 kb on - strand, within MIT1002_00134 at 144.121 kb on - strand, within MIT1002_00134 at 144.134 kb on + strand, within MIT1002_00134 at 144.207 kb on - strand, within MIT1002_00134 at 144.286 kb on + strand, within MIT1002_00134 at 144.358 kb on + strand, within MIT1002_00134 at 144.358 kb on + strand, within MIT1002_00134 at 144.411 kb on + strand at 144.459 kb on - strand at 144.521 kb on - strand at 144.527 kb on + strand at 144.607 kb on - strand at 144.770 kb on + strand at 144.770 kb on + strand at 144.770 kb on + strand at 144.770 kb on + strand at 144.778 kb on - strand at 144.778 kb on - strand at 144.789 kb on + strand at 144.823 kb on + strand, within MIT1002_00135 at 144.823 kb on + strand, within MIT1002_00135 at 144.831 kb on - strand, within MIT1002_00135 at 144.851 kb on + strand, within MIT1002_00135 at 144.871 kb on - strand, within MIT1002_00135 at 144.944 kb on + strand, within MIT1002_00135 at 144.987 kb on + strand, within MIT1002_00135 at 144.995 kb on + strand, within MIT1002_00135 at 144.995 kb on - strand, within MIT1002_00135 at 145.028 kb on - strand, within MIT1002_00135 at 145.074 kb on - strand, within MIT1002_00135 at 145.082 kb on + strand, within MIT1002_00135 at 145.090 kb on - strand, within MIT1002_00135 at 145.132 kb on - strand, within MIT1002_00135 at 145.203 kb on + strand, within MIT1002_00135 at 145.253 kb on + strand, within MIT1002_00135 at 145.270 kb on - strand, within MIT1002_00135 at 145.292 kb on + strand, within MIT1002_00135 at 145.298 kb on + strand, within MIT1002_00135 at 145.300 kb on - strand, within MIT1002_00135 at 145.370 kb on - strand, within MIT1002_00135 at 145.461 kb on + strand, within MIT1002_00135 at 145.461 kb on + strand, within MIT1002_00135 at 145.469 kb on - strand, within MIT1002_00135 at 145.469 kb on - strand, within MIT1002_00135 at 145.548 kb on - strand, within MIT1002_00135 at 145.563 kb on - strand, within MIT1002_00135 at 145.566 kb on - strand, within MIT1002_00135 at 145.572 kb on + strand, within MIT1002_00135 at 145.585 kb on + strand, within MIT1002_00135 at 145.585 kb on + strand, within MIT1002_00135 at 145.603 kb on - strand, within MIT1002_00135 at 145.620 kb on + strand, within MIT1002_00135 at 145.628 kb on - strand, within MIT1002_00135 at 145.658 kb on + strand, within MIT1002_00135 at 145.764 kb on + strand, within MIT1002_00135 at 145.771 kb on - strand, within MIT1002_00135 at 145.772 kb on - strand, within MIT1002_00135 at 145.811 kb on - strand, within MIT1002_00135 at 145.816 kb on - strand, within MIT1002_00135 at 145.869 kb on - strand, within MIT1002_00135 at 146.010 kb on + strand, within MIT1002_00135 at 146.073 kb on + strand, within MIT1002_00135 at 146.188 kb on + strand, within MIT1002_00135 at 146.188 kb on + strand, within MIT1002_00135 at 146.211 kb on + strand, within MIT1002_00135 at 146.216 kb on - strand, within MIT1002_00135 at 146.250 kb on + strand, within MIT1002_00135 at 146.290 kb on + strand, within MIT1002_00135 at 146.298 kb on - strand, within MIT1002_00135 at 146.313 kb on + strand, within MIT1002_00135 at 146.320 kb on + strand, within MIT1002_00135 at 146.320 kb on + strand, within MIT1002_00135 at 146.328 kb on - strand, within MIT1002_00135 at 146.334 kb on - strand, within MIT1002_00135 at 146.334 kb on - strand, within MIT1002_00135 at 146.455 kb on + strand, within MIT1002_00135 at 146.464 kb on + strand, within MIT1002_00135 at 146.482 kb on - strand, within MIT1002_00135 at 146.505 kb on + strand, within MIT1002_00135 at 146.505 kb on + strand, within MIT1002_00135 at 146.518 kb on - strand, within MIT1002_00135 at 146.587 kb on - strand, within MIT1002_00135 at 146.589 kb on + strand, within MIT1002_00135 at 146.617 kb on - strand, within MIT1002_00135 at 146.656 kb on - strand, within MIT1002_00135 at 146.723 kb on - strand, within MIT1002_00135 at 146.743 kb on + strand, within MIT1002_00135 at 146.827 kb on - strand, within MIT1002_00135 at 146.833 kb on - strand, within MIT1002_00135 at 146.851 kb on + strand, within MIT1002_00135 at 146.907 kb on + strand, within MIT1002_00135 at 146.915 kb on - strand, within MIT1002_00135 at 146.933 kb on - strand, within MIT1002_00135 at 146.933 kb on - strand, within MIT1002_00135 at 147.061 kb on + strand, within MIT1002_00135 at 147.066 kb on + strand, within MIT1002_00135 at 147.069 kb on - strand, within MIT1002_00135 at 147.069 kb on - strand, within MIT1002_00135 at 147.076 kb on - strand, within MIT1002_00135 at 147.078 kb on + strand, within MIT1002_00135 at 147.100 kb on + strand, within MIT1002_00135 at 147.115 kb on + strand, within MIT1002_00135 at 147.115 kb on + strand, within MIT1002_00135 at 147.151 kb on - strand, within MIT1002_00135 at 147.164 kb on + strand, within MIT1002_00135 at 147.172 kb on - strand, within MIT1002_00135 at 147.172 kb on - strand, within MIT1002_00135 at 147.172 kb on - strand, within MIT1002_00135 at 147.302 kb on + strand at 147.352 kb on + strand at 147.360 kb on - strand at 147.400 kb on + strand at 147.400 kb on + strand at 147.439 kb on - strand at 147.439 kb on - strand at 147.496 kb on - strand at 147.579 kb on - strand at 147.688 kb on + strand at 147.690 kb on + strand at 147.739 kb on - strand, within MIT1002_00136 at 147.768 kb on + strand, within MIT1002_00136 at 147.776 kb on - strand, within MIT1002_00136 at 147.786 kb on - strand, within MIT1002_00136 at 147.786 kb on - strand, within MIT1002_00136 at 147.809 kb on + strand, within MIT1002_00136 at 147.837 kb on + strand, within MIT1002_00136 at 147.847 kb on + strand, within MIT1002_00136 at 147.865 kb on + strand, within MIT1002_00136 at 147.865 kb on + strand, within MIT1002_00136 at 147.865 kb on + strand, within MIT1002_00136 at 147.867 kb on + strand, within MIT1002_00136 at 147.873 kb on - strand, within MIT1002_00136 at 147.911 kb on + strand, within MIT1002_00136 at 147.919 kb on + strand, within MIT1002_00136 at 147.961 kb on + strand, within MIT1002_00136 at 147.979 kb on + strand, within MIT1002_00136 at 148.000 kb on + strand, within MIT1002_00136 at 148.050 kb on + strand, within MIT1002_00136 at 148.163 kb on + strand at 148.163 kb on + strand at 148.171 kb on - strand at 148.171 kb on - strand at 148.171 kb on - strand at 148.171 kb on - strand at 148.248 kb on - strand at 148.248 kb on - strand at 148.248 kb on - strand at 148.248 kb on - strand at 148.286 kb on + strand at 148.293 kb on + strand at 148.341 kb on + strand at 148.356 kb on + strand at 148.422 kb on - strand at 148.522 kb on + strand, within MIT1002_00137 at 148.532 kb on + strand, within MIT1002_00137 at 148.532 kb on + strand, within MIT1002_00137 at 148.532 kb on + strand, within MIT1002_00137 at 148.532 kb on + strand, within MIT1002_00137 at 148.535 kb on - strand, within MIT1002_00137 at 148.540 kb on - strand, within MIT1002_00137 at 148.540 kb on - strand, within MIT1002_00137 at 148.540 kb on - strand, within MIT1002_00137
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 5 remove 143,504 + MIT1002_00134 0.15 -0.8 143,504 + MIT1002_00134 0.15 -1.8 143,504 + MIT1002_00134 0.15 +0.2 143,579 + MIT1002_00134 0.22 +0.5 143,617 + MIT1002_00134 0.25 -0.9 143,638 + MIT1002_00134 0.27 -1.6 143,638 + MIT1002_00134 0.27 +1.0 143,640 + MIT1002_00134 0.27 -0.2 143,646 - MIT1002_00134 0.28 -1.3 143,646 - MIT1002_00134 0.28 -1.2 143,646 - MIT1002_00134 0.28 +0.7 143,646 - MIT1002_00134 0.28 +0.6 143,648 - MIT1002_00134 0.28 +2.5 143,682 + MIT1002_00134 0.31 -0.1 143,691 - MIT1002_00134 0.32 -0.3 143,711 - MIT1002_00134 0.33 +1.5 143,813 - MIT1002_00134 0.42 -1.5 143,855 - MIT1002_00134 0.46 -2.0 143,876 + MIT1002_00134 0.48 +0.4 143,942 + MIT1002_00134 0.53 +1.6 143,950 - MIT1002_00134 0.54 -0.1 143,950 - MIT1002_00134 0.54 +1.9 143,950 - MIT1002_00134 0.54 -1.5 143,961 + MIT1002_00134 0.55 +1.4 143,981 + MIT1002_00134 0.57 +0.9 144,010 - MIT1002_00134 0.59 +0.5 144,113 + MIT1002_00134 0.68 +0.3 144,116 - MIT1002_00134 0.69 -0.1 144,121 - MIT1002_00134 0.69 +0.6 144,134 + MIT1002_00134 0.70 +1.1 144,207 - MIT1002_00134 0.77 +0.2 144,286 + MIT1002_00134 0.84 +1.1 144,358 + MIT1002_00134 0.90 -0.5 144,358 + MIT1002_00134 0.90 +0.3 144,411 + +0.1 144,459 - -0.6 144,521 - +0.3 144,527 + +0.9 144,607 - +1.1 144,770 + -2.4 144,770 + -0.7 144,770 + -2.2 144,770 + +0.2 144,778 - +0.3 144,778 - +1.8 144,789 + +0.1 144,823 + MIT1002_00135 0.11 +1.1 144,823 + MIT1002_00135 0.11 -1.7 144,831 - MIT1002_00135 0.11 +1.0 144,851 + MIT1002_00135 0.11 +0.2 144,871 - MIT1002_00135 0.12 +1.4 144,944 + MIT1002_00135 0.14 -1.3 144,987 + MIT1002_00135 0.16 -1.5 144,995 + MIT1002_00135 0.16 -1.9 144,995 - MIT1002_00135 0.16 -0.1 145,028 - MIT1002_00135 0.17 +0.1 145,074 - MIT1002_00135 0.19 +1.5 145,082 + MIT1002_00135 0.19 +1.2 145,090 - MIT1002_00135 0.19 -0.8 145,132 - MIT1002_00135 0.21 +10.6 145,203 + MIT1002_00135 0.23 +0.7 145,253 + MIT1002_00135 0.24 -0.8 145,270 - MIT1002_00135 0.25 +0.9 145,292 + MIT1002_00135 0.26 +0.9 145,298 + MIT1002_00135 0.26 +1.1 145,300 - MIT1002_00135 0.26 -0.5 145,370 - MIT1002_00135 0.28 -0.6 145,461 + MIT1002_00135 0.31 -3.5 145,461 + MIT1002_00135 0.31 +0.5 145,469 - MIT1002_00135 0.31 -0.9 145,469 - MIT1002_00135 0.31 +0.5 145,548 - MIT1002_00135 0.34 +0.0 145,563 - MIT1002_00135 0.34 +0.7 145,566 - MIT1002_00135 0.35 -0.3 145,572 + MIT1002_00135 0.35 +2.4 145,585 + MIT1002_00135 0.35 -0.3 145,585 + MIT1002_00135 0.35 -1.0 145,603 - MIT1002_00135 0.36 +1.7 145,620 + MIT1002_00135 0.36 +0.7 145,628 - MIT1002_00135 0.37 -1.3 145,658 + MIT1002_00135 0.37 +0.5 145,764 + MIT1002_00135 0.41 +0.7 145,771 - MIT1002_00135 0.41 +0.3 145,772 - MIT1002_00135 0.41 +1.3 145,811 - MIT1002_00135 0.42 +0.0 145,816 - MIT1002_00135 0.43 -1.5 145,869 - MIT1002_00135 0.44 +0.5 146,010 + MIT1002_00135 0.49 -0.1 146,073 + MIT1002_00135 0.51 -0.5 146,188 + MIT1002_00135 0.55 +0.0 146,188 + MIT1002_00135 0.55 -2.3 146,211 + MIT1002_00135 0.55 -1.2 146,216 - MIT1002_00135 0.56 +1.6 146,250 + MIT1002_00135 0.57 -2.5 146,290 + MIT1002_00135 0.58 -0.5 146,298 - MIT1002_00135 0.58 +0.4 146,313 + MIT1002_00135 0.59 -1.6 146,320 + MIT1002_00135 0.59 +1.2 146,320 + MIT1002_00135 0.59 +0.9 146,328 - MIT1002_00135 0.59 +1.0 146,334 - MIT1002_00135 0.59 +0.4 146,334 - MIT1002_00135 0.59 +2.5 146,455 + MIT1002_00135 0.63 -0.4 146,464 + MIT1002_00135 0.64 +1.3 146,482 - MIT1002_00135 0.64 +1.4 146,505 + MIT1002_00135 0.65 +0.3 146,505 + MIT1002_00135 0.65 +2.2 146,518 - MIT1002_00135 0.65 -2.5 146,587 - MIT1002_00135 0.67 -2.3 146,589 + MIT1002_00135 0.68 -0.4 146,617 - MIT1002_00135 0.68 -0.3 146,656 - MIT1002_00135 0.70 -2.5 146,723 - MIT1002_00135 0.72 -0.6 146,743 + MIT1002_00135 0.73 -1.3 146,827 - MIT1002_00135 0.75 +0.7 146,833 - MIT1002_00135 0.75 -1.1 146,851 + MIT1002_00135 0.76 -0.9 146,907 + MIT1002_00135 0.78 +0.4 146,915 - MIT1002_00135 0.78 -1.0 146,933 - MIT1002_00135 0.79 -1.1 146,933 - MIT1002_00135 0.79 +2.3 147,061 + MIT1002_00135 0.83 +1.7 147,066 + MIT1002_00135 0.83 +2.2 147,069 - MIT1002_00135 0.83 +0.7 147,069 - MIT1002_00135 0.83 -0.8 147,076 - MIT1002_00135 0.83 -0.3 147,078 + MIT1002_00135 0.83 +0.9 147,100 + MIT1002_00135 0.84 -0.3 147,115 + MIT1002_00135 0.85 -0.0 147,115 + MIT1002_00135 0.85 -1.3 147,151 - MIT1002_00135 0.86 +0.7 147,164 + MIT1002_00135 0.86 +0.2 147,172 - MIT1002_00135 0.86 +2.9 147,172 - MIT1002_00135 0.86 +1.6 147,172 - MIT1002_00135 0.86 -1.4 147,302 + +1.3 147,352 + -0.4 147,360 - +0.3 147,400 + +1.1 147,400 + +1.4 147,439 - +0.6 147,439 - -1.5 147,496 - +1.7 147,579 - +1.7 147,688 + +0.3 147,690 + -2.2 147,739 - MIT1002_00136 0.18 -1.8 147,768 + MIT1002_00136 0.23 +0.0 147,776 - MIT1002_00136 0.25 -0.7 147,786 - MIT1002_00136 0.27 -0.7 147,786 - MIT1002_00136 0.27 -1.1 147,809 + MIT1002_00136 0.32 -0.1 147,837 + MIT1002_00136 0.37 -0.3 147,847 + MIT1002_00136 0.39 +2.2 147,865 + MIT1002_00136 0.43 -0.9 147,865 + MIT1002_00136 0.43 -0.5 147,865 + MIT1002_00136 0.43 +0.2 147,867 + MIT1002_00136 0.43 -1.5 147,873 - MIT1002_00136 0.45 -0.6 147,911 + MIT1002_00136 0.52 +0.7 147,919 + MIT1002_00136 0.54 +0.3 147,961 + MIT1002_00136 0.62 -0.4 147,979 + MIT1002_00136 0.66 -0.7 148,000 + MIT1002_00136 0.70 -0.4 148,050 + MIT1002_00136 0.80 +0.8 148,163 + +1.3 148,163 + -0.5 148,171 - +0.7 148,171 - -0.5 148,171 - +0.1 148,171 - +0.6 148,248 - -0.6 148,248 - -0.2 148,248 - +0.2 148,248 - +0.1 148,286 + +0.8 148,293 + +0.5 148,341 + +1.2 148,356 + +0.5 148,422 - -0.3 148,522 + MIT1002_00137 0.14 +0.3 148,532 + MIT1002_00137 0.15 +0.3 148,532 + MIT1002_00137 0.15 +0.4 148,532 + MIT1002_00137 0.15 -0.3 148,532 + MIT1002_00137 0.15 +0.0 148,535 - MIT1002_00137 0.15 -3.0 148,540 - MIT1002_00137 0.15 -0.5 148,540 - MIT1002_00137 0.15 +0.1 148,540 - MIT1002_00137 0.15 -0.2
Or see this region's nucleotide sequence