Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS43480

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS43475 and QEN71_RS43480 are separated by 42 nucleotidesQEN71_RS43480 and QEN71_RS43485 are separated by 48 nucleotidesQEN71_RS43485 and QEN71_RS43490 are separated by 68 nucleotides QEN71_RS43475: QEN71_RS43475 - IS5 family transposase, at 182,990 to 183,802 _RS43475 QEN71_RS43480: QEN71_RS43480 - hypothetical protein, at 183,845 to 184,144 _RS43480 QEN71_RS43485: QEN71_RS43485 - hypothetical protein, at 184,193 to 184,819 _RS43485 QEN71_RS43490: QEN71_RS43490 - hypothetical protein, at 184,888 to 185,274 _RS43490 Position (kb) 183 184 185Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 182.875 kb on + strandat 182.876 kb on - strandat 182.876 kb on - strandat 182.882 kb on + strandat 182.882 kb on + strandat 182.882 kb on + strandat 182.883 kb on - strandat 182.883 kb on - strandat 182.883 kb on - strandat 182.883 kb on - strandat 182.883 kb on - strandat 182.886 kb on + strandat 182.909 kb on + strandat 182.982 kb on - strandat 182.992 kb on - strandat 182.992 kb on - strandat 183.851 kb on + strandat 183.851 kb on + strandat 183.968 kb on + strand, within QEN71_RS43480at 184.048 kb on + strand, within QEN71_RS43480at 184.057 kb on + strand, within QEN71_RS43480at 184.058 kb on - strand, within QEN71_RS43480at 184.058 kb on - strand, within QEN71_RS43480at 184.058 kb on - strand, within QEN71_RS43480at 184.062 kb on + strand, within QEN71_RS43480at 184.063 kb on - strand, within QEN71_RS43480at 184.189 kb on + strandat 184.190 kb on - strandat 184.238 kb on + strandat 184.239 kb on - strandat 184.355 kb on + strand, within QEN71_RS43485at 184.356 kb on - strand, within QEN71_RS43485at 184.356 kb on - strand, within QEN71_RS43485at 184.356 kb on - strand, within QEN71_RS43485at 184.356 kb on - strand, within QEN71_RS43485at 184.356 kb on - strand, within QEN71_RS43485at 184.369 kb on + strand, within QEN71_RS43485at 184.371 kb on + strand, within QEN71_RS43485at 184.372 kb on - strand, within QEN71_RS43485at 184.372 kb on - strand, within QEN71_RS43485at 184.372 kb on - strand, within QEN71_RS43485at 184.390 kb on - strand, within QEN71_RS43485at 184.400 kb on + strand, within QEN71_RS43485at 184.468 kb on + strand, within QEN71_RS43485at 184.469 kb on - strand, within QEN71_RS43485at 184.469 kb on - strand, within QEN71_RS43485at 184.475 kb on - strand, within QEN71_RS43485at 184.475 kb on - strand, within QEN71_RS43485at 184.541 kb on + strand, within QEN71_RS43485at 184.542 kb on - strand, within QEN71_RS43485at 184.542 kb on - strand, within QEN71_RS43485at 184.581 kb on + strand, within QEN71_RS43485at 184.581 kb on + strand, within QEN71_RS43485at 184.622 kb on - strand, within QEN71_RS43485at 184.622 kb on - strand, within QEN71_RS43485at 184.651 kb on - strand, within QEN71_RS43485at 184.664 kb on + strand, within QEN71_RS43485at 184.665 kb on - strand, within QEN71_RS43485at 184.717 kb on + strand, within QEN71_RS43485at 184.718 kb on - strand, within QEN71_RS43485at 184.739 kb on + strand, within QEN71_RS43485at 184.739 kb on + strand, within QEN71_RS43485at 184.740 kb on - strand, within QEN71_RS43485at 184.740 kb on - strand, within QEN71_RS43485at 184.740 kb on - strand, within QEN71_RS43485at 184.797 kb on - strandat 184.811 kb on + strandat 184.811 kb on + strandat 184.812 kb on - strandat 184.812 kb on - strandat 184.893 kb on + strandat 184.893 kb on + strandat 184.894 kb on - strandat 184.894 kb on - strandat 184.894 kb on - strandat 184.894 kb on - strandat 184.986 kb on - strand, within QEN71_RS43490at 185.000 kb on + strand, within QEN71_RS43490at 185.001 kb on - strand, within QEN71_RS43490at 185.024 kb on + strand, within QEN71_RS43490at 185.080 kb on + strand, within QEN71_RS43490at 185.081 kb on - strand, within QEN71_RS43490

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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182,875 + +1.2
182,876 - -0.4
182,876 - -2.0
182,882 + -1.7
182,882 + +0.2
182,882 + -0.3
182,883 - -1.4
182,883 - -0.2
182,883 - -0.2
182,883 - -2.0
182,883 - -0.2
182,886 + +0.3
182,909 + +0.4
182,982 - +1.0
182,992 - -0.4
182,992 - -0.7
183,851 + +0.5
183,851 + -0.7
183,968 + QEN71_RS43480 0.41 -0.4
184,048 + QEN71_RS43480 0.68 +2.1
184,057 + QEN71_RS43480 0.71 -0.6
184,058 - QEN71_RS43480 0.71 -1.3
184,058 - QEN71_RS43480 0.71 +0.4
184,058 - QEN71_RS43480 0.71 -0.6
184,062 + QEN71_RS43480 0.72 -0.8
184,063 - QEN71_RS43480 0.73 +0.0
184,189 + -0.4
184,190 - -0.3
184,238 + +0.4
184,239 - -1.2
184,355 + QEN71_RS43485 0.26 +0.1
184,356 - QEN71_RS43485 0.26 +0.3
184,356 - QEN71_RS43485 0.26 -2.0
184,356 - QEN71_RS43485 0.26 -0.1
184,356 - QEN71_RS43485 0.26 +0.9
184,356 - QEN71_RS43485 0.26 -0.7
184,369 + QEN71_RS43485 0.28 -0.1
184,371 + QEN71_RS43485 0.28 +0.0
184,372 - QEN71_RS43485 0.29 -0.8
184,372 - QEN71_RS43485 0.29 -0.8
184,372 - QEN71_RS43485 0.29 -0.8
184,390 - QEN71_RS43485 0.31 -0.6
184,400 + QEN71_RS43485 0.33 +1.2
184,468 + QEN71_RS43485 0.44 -0.1
184,469 - QEN71_RS43485 0.44 -0.8
184,469 - QEN71_RS43485 0.44 +0.1
184,475 - QEN71_RS43485 0.45 -0.1
184,475 - QEN71_RS43485 0.45 -1.0
184,541 + QEN71_RS43485 0.56 +0.1
184,542 - QEN71_RS43485 0.56 +0.1
184,542 - QEN71_RS43485 0.56 -0.2
184,581 + QEN71_RS43485 0.62 +0.5
184,581 + QEN71_RS43485 0.62 +0.6
184,622 - QEN71_RS43485 0.68 +0.8
184,622 - QEN71_RS43485 0.68 +0.0
184,651 - QEN71_RS43485 0.73 +0.0
184,664 + QEN71_RS43485 0.75 -0.6
184,665 - QEN71_RS43485 0.75 +0.4
184,717 + QEN71_RS43485 0.84 -1.1
184,718 - QEN71_RS43485 0.84 -0.1
184,739 + QEN71_RS43485 0.87 +0.0
184,739 + QEN71_RS43485 0.87 -1.1
184,740 - QEN71_RS43485 0.87 -0.3
184,740 - QEN71_RS43485 0.87 -1.2
184,740 - QEN71_RS43485 0.87 -0.7
184,797 - -1.0
184,811 + +0.4
184,811 + -0.4
184,812 - -0.4
184,812 - -1.4
184,893 + -2.0
184,893 + +0.4
184,894 - +0.2
184,894 - -2.8
184,894 - -0.6
184,894 - +0.8
184,986 - QEN71_RS43490 0.25 +0.1
185,000 + QEN71_RS43490 0.29 -0.3
185,001 - QEN71_RS43490 0.29 +0.2
185,024 + QEN71_RS43490 0.35 +0.4
185,080 + QEN71_RS43490 0.50 -1.0
185,081 - QEN71_RS43490 0.50 +1.5

Or see this region's nucleotide sequence