Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS42185

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS42180 and QEN71_RS42185 overlap by 10 nucleotidesQEN71_RS42185 and QEN71_RS42190 are separated by 56 nucleotidesQEN71_RS42190 and QEN71_RS42195 are separated by 71 nucleotidesQEN71_RS42195 and QEN71_RS42200 overlap by 4 nucleotides QEN71_RS42180: QEN71_RS42180 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifE, at 519,401 to 520,933 _RS42180 QEN71_RS42185: QEN71_RS42185 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifN, at 520,924 to 522,273 _RS42185 QEN71_RS42190: QEN71_RS42190 - nitrogen fixation protein NifX, at 522,330 to 522,746 _RS42190 QEN71_RS42195: QEN71_RS42195 - CCE_0567 family metalloprotein, at 522,818 to 523,039 _RS42195 QEN71_RS42200: QEN71_RS42200 - ferredoxin III, nif-specific, at 523,036 to 523,338 _RS42200 Position (kb) 520 521 522 523Strain fitness (log2 ratio) -2 -1 0 1 2at 519.967 kb on + strand, within QEN71_RS42180at 519.967 kb on + strand, within QEN71_RS42180at 519.985 kb on + strand, within QEN71_RS42180at 519.985 kb on + strand, within QEN71_RS42180at 519.986 kb on - strand, within QEN71_RS42180at 519.986 kb on - strand, within QEN71_RS42180at 519.986 kb on - strand, within QEN71_RS42180at 519.986 kb on - strand, within QEN71_RS42180at 519.988 kb on + strand, within QEN71_RS42180at 519.988 kb on + strand, within QEN71_RS42180at 519.988 kb on + strand, within QEN71_RS42180at 520.002 kb on - strand, within QEN71_RS42180at 520.003 kb on + strand, within QEN71_RS42180at 520.003 kb on + strand, within QEN71_RS42180at 520.004 kb on - strand, within QEN71_RS42180at 520.060 kb on + strand, within QEN71_RS42180at 520.060 kb on + strand, within QEN71_RS42180at 520.061 kb on - strand, within QEN71_RS42180at 520.061 kb on - strand, within QEN71_RS42180at 520.061 kb on - strand, within QEN71_RS42180at 520.062 kb on + strand, within QEN71_RS42180at 520.062 kb on + strand, within QEN71_RS42180at 520.062 kb on + strand, within QEN71_RS42180at 520.063 kb on - strand, within QEN71_RS42180at 520.063 kb on - strand, within QEN71_RS42180at 520.063 kb on - strand, within QEN71_RS42180at 520.092 kb on - strand, within QEN71_RS42180at 520.130 kb on - strand, within QEN71_RS42180at 520.130 kb on - strand, within QEN71_RS42180at 520.130 kb on - strand, within QEN71_RS42180at 520.197 kb on - strand, within QEN71_RS42180at 520.197 kb on - strand, within QEN71_RS42180at 520.469 kb on - strand, within QEN71_RS42180at 520.540 kb on + strand, within QEN71_RS42180at 520.541 kb on - strand, within QEN71_RS42180at 520.559 kb on + strand, within QEN71_RS42180at 520.559 kb on + strand, within QEN71_RS42180at 520.559 kb on + strand, within QEN71_RS42180at 520.559 kb on + strand, within QEN71_RS42180at 520.559 kb on + strand, within QEN71_RS42180at 520.559 kb on + strand, within QEN71_RS42180at 520.560 kb on - strand, within QEN71_RS42180at 520.616 kb on + strand, within QEN71_RS42180at 520.616 kb on + strand, within QEN71_RS42180at 520.616 kb on + strand, within QEN71_RS42180at 520.617 kb on - strand, within QEN71_RS42180at 520.617 kb on - strand, within QEN71_RS42180at 520.617 kb on - strand, within QEN71_RS42180at 520.617 kb on - strand, within QEN71_RS42180at 520.756 kb on + strand, within QEN71_RS42180at 520.756 kb on + strand, within QEN71_RS42180at 520.757 kb on - strand, within QEN71_RS42180at 520.931 kb on + strandat 520.999 kb on + strandat 520.999 kb on + strandat 521.133 kb on + strand, within QEN71_RS42185at 521.133 kb on + strand, within QEN71_RS42185at 521.133 kb on + strand, within QEN71_RS42185at 521.134 kb on - strand, within QEN71_RS42185at 521.134 kb on - strand, within QEN71_RS42185at 521.139 kb on + strand, within QEN71_RS42185at 521.178 kb on - strand, within QEN71_RS42185at 521.178 kb on - strand, within QEN71_RS42185at 521.188 kb on - strand, within QEN71_RS42185at 521.318 kb on - strand, within QEN71_RS42185at 521.336 kb on - strand, within QEN71_RS42185at 521.336 kb on - strand, within QEN71_RS42185at 521.336 kb on - strand, within QEN71_RS42185at 521.410 kb on - strand, within QEN71_RS42185at 521.410 kb on - strand, within QEN71_RS42185at 521.414 kb on + strand, within QEN71_RS42185at 521.415 kb on - strand, within QEN71_RS42185at 521.450 kb on + strand, within QEN71_RS42185at 521.451 kb on - strand, within QEN71_RS42185at 521.451 kb on - strand, within QEN71_RS42185at 521.451 kb on - strand, within QEN71_RS42185at 521.451 kb on - strand, within QEN71_RS42185at 521.586 kb on + strand, within QEN71_RS42185at 521.586 kb on + strand, within QEN71_RS42185at 521.587 kb on - strand, within QEN71_RS42185at 521.587 kb on - strand, within QEN71_RS42185at 521.626 kb on - strand, within QEN71_RS42185at 521.786 kb on - strand, within QEN71_RS42185at 521.837 kb on - strand, within QEN71_RS42185at 521.966 kb on + strand, within QEN71_RS42185at 522.042 kb on + strand, within QEN71_RS42185at 522.172 kb on - strandat 522.172 kb on - strandat 522.209 kb on + strandat 522.209 kb on + strandat 522.209 kb on + strandat 522.209 kb on + strandat 522.209 kb on + strandat 522.210 kb on - strandat 522.210 kb on - strandat 522.293 kb on - strandat 522.401 kb on + strand, within QEN71_RS42190at 522.406 kb on - strand, within QEN71_RS42190at 522.406 kb on - strand, within QEN71_RS42190at 522.412 kb on + strand, within QEN71_RS42190at 522.412 kb on + strand, within QEN71_RS42190at 522.412 kb on + strand, within QEN71_RS42190at 522.413 kb on - strand, within QEN71_RS42190at 522.428 kb on + strand, within QEN71_RS42190at 522.428 kb on + strand, within QEN71_RS42190at 522.428 kb on + strand, within QEN71_RS42190at 522.428 kb on + strand, within QEN71_RS42190at 522.428 kb on + strand, within QEN71_RS42190at 522.428 kb on + strand, within QEN71_RS42190at 522.429 kb on - strand, within QEN71_RS42190at 522.429 kb on - strand, within QEN71_RS42190at 522.429 kb on - strand, within QEN71_RS42190at 522.429 kb on - strand, within QEN71_RS42190at 522.531 kb on + strand, within QEN71_RS42190at 522.709 kb on - strandat 522.709 kb on - strandat 522.713 kb on + strandat 522.714 kb on - strandat 522.733 kb on + strandat 522.733 kb on + strandat 522.734 kb on - strandat 522.734 kb on - strandat 523.061 kb on + strandat 523.178 kb on + strand, within QEN71_RS42200

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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519,967 + QEN71_RS42180 0.37 -0.6
519,967 + QEN71_RS42180 0.37 +0.1
519,985 + QEN71_RS42180 0.38 +0.8
519,985 + QEN71_RS42180 0.38 -0.6
519,986 - QEN71_RS42180 0.38 -0.1
519,986 - QEN71_RS42180 0.38 -1.0
519,986 - QEN71_RS42180 0.38 -0.1
519,986 - QEN71_RS42180 0.38 +0.1
519,988 + QEN71_RS42180 0.38 +0.2
519,988 + QEN71_RS42180 0.38 -0.1
519,988 + QEN71_RS42180 0.38 -0.1
520,002 - QEN71_RS42180 0.39 -0.9
520,003 + QEN71_RS42180 0.39 -0.8
520,003 + QEN71_RS42180 0.39 -1.5
520,004 - QEN71_RS42180 0.39 +0.1
520,060 + QEN71_RS42180 0.43 -1.6
520,060 + QEN71_RS42180 0.43 +1.7
520,061 - QEN71_RS42180 0.43 -0.1
520,061 - QEN71_RS42180 0.43 -0.6
520,061 - QEN71_RS42180 0.43 +0.3
520,062 + QEN71_RS42180 0.43 -0.5
520,062 + QEN71_RS42180 0.43 -0.2
520,062 + QEN71_RS42180 0.43 -0.8
520,063 - QEN71_RS42180 0.43 +0.1
520,063 - QEN71_RS42180 0.43 +0.7
520,063 - QEN71_RS42180 0.43 +0.1
520,092 - QEN71_RS42180 0.45 +1.3
520,130 - QEN71_RS42180 0.48 +0.0
520,130 - QEN71_RS42180 0.48 -0.1
520,130 - QEN71_RS42180 0.48 -1.1
520,197 - QEN71_RS42180 0.52 +1.1
520,197 - QEN71_RS42180 0.52 +0.4
520,469 - QEN71_RS42180 0.70 -1.0
520,540 + QEN71_RS42180 0.74 -1.4
520,541 - QEN71_RS42180 0.74 -0.2
520,559 + QEN71_RS42180 0.76 +0.8
520,559 + QEN71_RS42180 0.76 -1.8
520,559 + QEN71_RS42180 0.76 -0.6
520,559 + QEN71_RS42180 0.76 +0.4
520,559 + QEN71_RS42180 0.76 +0.5
520,559 + QEN71_RS42180 0.76 -1.4
520,560 - QEN71_RS42180 0.76 -1.2
520,616 + QEN71_RS42180 0.79 +0.2
520,616 + QEN71_RS42180 0.79 +0.5
520,616 + QEN71_RS42180 0.79 -0.9
520,617 - QEN71_RS42180 0.79 -0.6
520,617 - QEN71_RS42180 0.79 -0.5
520,617 - QEN71_RS42180 0.79 -0.5
520,617 - QEN71_RS42180 0.79 +0.5
520,756 + QEN71_RS42180 0.88 -2.1
520,756 + QEN71_RS42180 0.88 +0.6
520,757 - QEN71_RS42180 0.88 -1.1
520,931 + -1.2
520,999 + -1.5
520,999 + -0.4
521,133 + QEN71_RS42185 0.15 -0.5
521,133 + QEN71_RS42185 0.15 -0.3
521,133 + QEN71_RS42185 0.15 +0.0
521,134 - QEN71_RS42185 0.16 +0.9
521,134 - QEN71_RS42185 0.16 -0.2
521,139 + QEN71_RS42185 0.16 -0.1
521,178 - QEN71_RS42185 0.19 +1.6
521,178 - QEN71_RS42185 0.19 -0.8
521,188 - QEN71_RS42185 0.20 +1.9
521,318 - QEN71_RS42185 0.29 -0.9
521,336 - QEN71_RS42185 0.31 -0.1
521,336 - QEN71_RS42185 0.31 +0.4
521,336 - QEN71_RS42185 0.31 -2.1
521,410 - QEN71_RS42185 0.36 +0.9
521,410 - QEN71_RS42185 0.36 -1.6
521,414 + QEN71_RS42185 0.36 -1.4
521,415 - QEN71_RS42185 0.36 +0.7
521,450 + QEN71_RS42185 0.39 -1.0
521,451 - QEN71_RS42185 0.39 -1.2
521,451 - QEN71_RS42185 0.39 +0.1
521,451 - QEN71_RS42185 0.39 +1.2
521,451 - QEN71_RS42185 0.39 +0.5
521,586 + QEN71_RS42185 0.49 -1.1
521,586 + QEN71_RS42185 0.49 -0.1
521,587 - QEN71_RS42185 0.49 -0.3
521,587 - QEN71_RS42185 0.49 -1.0
521,626 - QEN71_RS42185 0.52 +1.9
521,786 - QEN71_RS42185 0.64 +0.6
521,837 - QEN71_RS42185 0.68 +0.1
521,966 + QEN71_RS42185 0.77 +0.9
522,042 + QEN71_RS42185 0.83 -0.9
522,172 - -1.3
522,172 - -1.0
522,209 + -2.0
522,209 + +0.2
522,209 + -0.4
522,209 + -0.9
522,209 + -0.7
522,210 - -1.1
522,210 - -0.6
522,293 - -0.2
522,401 + QEN71_RS42190 0.17 -2.0
522,406 - QEN71_RS42190 0.18 -0.1
522,406 - QEN71_RS42190 0.18 -1.5
522,412 + QEN71_RS42190 0.20 -1.2
522,412 + QEN71_RS42190 0.20 -0.6
522,412 + QEN71_RS42190 0.20 -0.3
522,413 - QEN71_RS42190 0.20 +0.1
522,428 + QEN71_RS42190 0.24 -1.0
522,428 + QEN71_RS42190 0.24 +0.7
522,428 + QEN71_RS42190 0.24 -0.6
522,428 + QEN71_RS42190 0.24 -0.4
522,428 + QEN71_RS42190 0.24 -1.6
522,428 + QEN71_RS42190 0.24 +0.0
522,429 - QEN71_RS42190 0.24 +0.1
522,429 - QEN71_RS42190 0.24 -1.2
522,429 - QEN71_RS42190 0.24 -0.4
522,429 - QEN71_RS42190 0.24 +0.1
522,531 + QEN71_RS42190 0.48 +0.4
522,709 - +1.6
522,709 - +0.9
522,713 + -1.7
522,714 - -0.6
522,733 + -0.4
522,733 + +0.2
522,734 - -1.1
522,734 - +0.0
523,061 + -1.4
523,178 + QEN71_RS42200 0.47 -0.2

Or see this region's nucleotide sequence