Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS35000

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS34995 and QEN71_RS35000 are separated by 40 nucleotidesQEN71_RS35000 and QEN71_RS35005 are separated by 184 nucleotides QEN71_RS34995: QEN71_RS34995 - patatin-like phospholipase family protein, at 1,183,306 to 1,185,522 _RS34995 QEN71_RS35000: QEN71_RS35000 - hypothetical protein, at 1,185,563 to 1,186,513 _RS35000 QEN71_RS35005: QEN71_RS35005 - ATP-binding protein, at 1,186,698 to 1,187,840 _RS35005 Position (kb) 1185 1186 1187Strain fitness (log2 ratio) -2 -1 0 1 2at 1184.713 kb on + strand, within QEN71_RS34995at 1184.713 kb on + strand, within QEN71_RS34995at 1184.716 kb on + strand, within QEN71_RS34995at 1184.716 kb on + strand, within QEN71_RS34995at 1184.716 kb on + strand, within QEN71_RS34995at 1184.716 kb on + strand, within QEN71_RS34995at 1184.716 kb on + strand, within QEN71_RS34995at 1184.717 kb on - strand, within QEN71_RS34995at 1184.717 kb on - strand, within QEN71_RS34995at 1184.717 kb on - strand, within QEN71_RS34995at 1184.717 kb on - strand, within QEN71_RS34995at 1184.717 kb on - strand, within QEN71_RS34995at 1184.717 kb on - strand, within QEN71_RS34995at 1184.717 kb on - strand, within QEN71_RS34995at 1184.728 kb on + strand, within QEN71_RS34995at 1184.728 kb on + strand, within QEN71_RS34995at 1184.729 kb on - strand, within QEN71_RS34995at 1184.749 kb on + strand, within QEN71_RS34995at 1184.750 kb on - strand, within QEN71_RS34995at 1184.750 kb on - strand, within QEN71_RS34995at 1184.761 kb on + strand, within QEN71_RS34995at 1184.761 kb on + strand, within QEN71_RS34995at 1184.761 kb on + strand, within QEN71_RS34995at 1184.762 kb on - strand, within QEN71_RS34995at 1184.762 kb on - strand, within QEN71_RS34995at 1184.875 kb on + strand, within QEN71_RS34995at 1184.876 kb on - strand, within QEN71_RS34995at 1184.876 kb on - strand, within QEN71_RS34995at 1184.888 kb on - strand, within QEN71_RS34995at 1184.902 kb on + strand, within QEN71_RS34995at 1184.902 kb on + strand, within QEN71_RS34995at 1184.902 kb on + strand, within QEN71_RS34995at 1184.903 kb on - strand, within QEN71_RS34995at 1184.903 kb on - strand, within QEN71_RS34995at 1184.955 kb on + strand, within QEN71_RS34995at 1184.956 kb on - strand, within QEN71_RS34995at 1184.959 kb on + strand, within QEN71_RS34995at 1184.959 kb on + strand, within QEN71_RS34995at 1184.959 kb on + strand, within QEN71_RS34995at 1184.959 kb on + strand, within QEN71_RS34995at 1184.959 kb on + strand, within QEN71_RS34995at 1184.959 kb on + strand, within QEN71_RS34995at 1184.959 kb on + strand, within QEN71_RS34995at 1184.959 kb on + strand, within QEN71_RS34995at 1184.959 kb on + strand, within QEN71_RS34995at 1184.959 kb on + strand, within QEN71_RS34995at 1184.960 kb on - strand, within QEN71_RS34995at 1184.960 kb on - strand, within QEN71_RS34995at 1184.960 kb on - strand, within QEN71_RS34995at 1184.960 kb on - strand, within QEN71_RS34995at 1184.960 kb on - strand, within QEN71_RS34995at 1184.960 kb on - strand, within QEN71_RS34995at 1184.960 kb on - strand, within QEN71_RS34995at 1185.034 kb on + strand, within QEN71_RS34995at 1185.034 kb on + strand, within QEN71_RS34995at 1185.035 kb on - strand, within QEN71_RS34995at 1185.035 kb on - strand, within QEN71_RS34995at 1185.087 kb on + strand, within QEN71_RS34995at 1185.097 kb on + strand, within QEN71_RS34995at 1185.097 kb on + strand, within QEN71_RS34995at 1185.098 kb on - strand, within QEN71_RS34995at 1185.102 kb on + strand, within QEN71_RS34995at 1185.102 kb on + strand, within QEN71_RS34995at 1185.103 kb on - strand, within QEN71_RS34995at 1185.103 kb on - strand, within QEN71_RS34995at 1185.135 kb on + strand, within QEN71_RS34995at 1185.135 kb on + strand, within QEN71_RS34995at 1185.135 kb on + strand, within QEN71_RS34995at 1185.135 kb on + strand, within QEN71_RS34995at 1185.135 kb on + strand, within QEN71_RS34995at 1185.135 kb on + strand, within QEN71_RS34995at 1185.135 kb on + strand, within QEN71_RS34995at 1185.135 kb on + strand, within QEN71_RS34995at 1185.135 kb on + strand, within QEN71_RS34995at 1185.136 kb on - strand, within QEN71_RS34995at 1185.136 kb on - strand, within QEN71_RS34995at 1185.136 kb on - strand, within QEN71_RS34995at 1185.136 kb on - strand, within QEN71_RS34995at 1185.136 kb on - strand, within QEN71_RS34995at 1185.235 kb on + strand, within QEN71_RS34995at 1185.236 kb on - strand, within QEN71_RS34995at 1185.236 kb on - strand, within QEN71_RS34995at 1185.258 kb on + strand, within QEN71_RS34995at 1185.269 kb on + strand, within QEN71_RS34995at 1185.269 kb on + strand, within QEN71_RS34995at 1185.269 kb on + strand, within QEN71_RS34995at 1185.269 kb on + strand, within QEN71_RS34995at 1185.269 kb on + strand, within QEN71_RS34995at 1185.269 kb on + strand, within QEN71_RS34995at 1185.269 kb on + strand, within QEN71_RS34995at 1185.270 kb on - strand, within QEN71_RS34995at 1185.270 kb on - strand, within QEN71_RS34995at 1185.270 kb on - strand, within QEN71_RS34995at 1185.270 kb on - strand, within QEN71_RS34995at 1185.270 kb on - strand, within QEN71_RS34995at 1185.270 kb on - strand, within QEN71_RS34995at 1185.270 kb on - strand, within QEN71_RS34995at 1185.271 kb on + strand, within QEN71_RS34995at 1185.271 kb on + strand, within QEN71_RS34995at 1185.271 kb on + strand, within QEN71_RS34995at 1185.271 kb on + strand, within QEN71_RS34995at 1185.271 kb on + strand, within QEN71_RS34995at 1185.271 kb on + strand, within QEN71_RS34995at 1185.271 kb on + strand, within QEN71_RS34995at 1185.272 kb on - strand, within QEN71_RS34995at 1185.272 kb on - strand, within QEN71_RS34995at 1185.286 kb on + strand, within QEN71_RS34995at 1185.286 kb on + strand, within QEN71_RS34995at 1185.286 kb on + strand, within QEN71_RS34995at 1185.286 kb on + strand, within QEN71_RS34995at 1185.287 kb on - strand, within QEN71_RS34995at 1185.287 kb on - strand, within QEN71_RS34995at 1185.287 kb on - strand, within QEN71_RS34995at 1185.287 kb on - strand, within QEN71_RS34995at 1185.287 kb on - strand, within QEN71_RS34995at 1185.287 kb on - strand, within QEN71_RS34995at 1185.287 kb on - strand, within QEN71_RS34995at 1185.287 kb on - strand, within QEN71_RS34995at 1185.423 kb on + strandat 1185.454 kb on + strandat 1185.454 kb on + strandat 1185.454 kb on + strandat 1185.496 kb on + strandat 1185.496 kb on + strandat 1185.496 kb on + strandat 1185.498 kb on + strandat 1185.499 kb on - strandat 1185.517 kb on + strandat 1185.517 kb on + strandat 1185.518 kb on - strandat 1185.518 kb on - strandat 1185.518 kb on - strandat 1185.691 kb on + strand, within QEN71_RS35000at 1185.692 kb on - strand, within QEN71_RS35000at 1185.963 kb on + strand, within QEN71_RS35000at 1186.079 kb on + strand, within QEN71_RS35000at 1186.079 kb on + strand, within QEN71_RS35000at 1186.079 kb on + strand, within QEN71_RS35000at 1186.079 kb on + strand, within QEN71_RS35000at 1186.079 kb on + strand, within QEN71_RS35000at 1186.080 kb on - strand, within QEN71_RS35000at 1186.080 kb on - strand, within QEN71_RS35000at 1186.080 kb on - strand, within QEN71_RS35000at 1186.080 kb on - strand, within QEN71_RS35000at 1186.080 kb on - strand, within QEN71_RS35000at 1186.080 kb on - strand, within QEN71_RS35000at 1186.187 kb on + strand, within QEN71_RS35000at 1186.187 kb on + strand, within QEN71_RS35000at 1186.187 kb on + strand, within QEN71_RS35000at 1186.188 kb on - strand, within QEN71_RS35000at 1186.188 kb on - strand, within QEN71_RS35000at 1186.188 kb on - strand, within QEN71_RS35000at 1186.188 kb on - strand, within QEN71_RS35000at 1186.188 kb on - strand, within QEN71_RS35000at 1186.211 kb on + strand, within QEN71_RS35000at 1186.211 kb on + strand, within QEN71_RS35000at 1186.211 kb on + strand, within QEN71_RS35000at 1186.211 kb on + strand, within QEN71_RS35000at 1186.211 kb on + strand, within QEN71_RS35000at 1186.212 kb on - strand, within QEN71_RS35000at 1186.212 kb on - strand, within QEN71_RS35000at 1186.212 kb on - strand, within QEN71_RS35000at 1186.212 kb on - strand, within QEN71_RS35000at 1186.244 kb on - strand, within QEN71_RS35000at 1186.317 kb on - strand, within QEN71_RS35000at 1186.330 kb on + strand, within QEN71_RS35000at 1186.511 kb on + strandat 1186.511 kb on + strandat 1186.512 kb on - strandat 1186.512 kb on - strandat 1186.512 kb on - strandat 1186.530 kb on + strandat 1186.662 kb on + strandat 1186.950 kb on + strand, within QEN71_RS35005at 1186.985 kb on - strand, within QEN71_RS35005at 1187.020 kb on + strand, within QEN71_RS35005at 1187.021 kb on - strand, within QEN71_RS35005at 1187.098 kb on + strand, within QEN71_RS35005at 1187.098 kb on + strand, within QEN71_RS35005at 1187.098 kb on + strand, within QEN71_RS35005at 1187.099 kb on - strand, within QEN71_RS35005at 1187.179 kb on + strand, within QEN71_RS35005at 1187.180 kb on - strand, within QEN71_RS35005at 1187.180 kb on - strand, within QEN71_RS35005at 1187.194 kb on + strand, within QEN71_RS35005at 1187.195 kb on - strand, within QEN71_RS35005at 1187.195 kb on - strand, within QEN71_RS35005at 1187.195 kb on - strand, within QEN71_RS35005at 1187.195 kb on - strand, within QEN71_RS35005at 1187.195 kb on - strand, within QEN71_RS35005at 1187.246 kb on + strand, within QEN71_RS35005at 1187.247 kb on - strand, within QEN71_RS35005at 1187.466 kb on - strand, within QEN71_RS35005

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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1,184,713 + QEN71_RS34995 0.63 +0.3
1,184,713 + QEN71_RS34995 0.63 +1.1
1,184,716 + QEN71_RS34995 0.64 -1.0
1,184,716 + QEN71_RS34995 0.64 +1.2
1,184,716 + QEN71_RS34995 0.64 -0.1
1,184,716 + QEN71_RS34995 0.64 -0.0
1,184,716 + QEN71_RS34995 0.64 -0.6
1,184,717 - QEN71_RS34995 0.64 -0.0
1,184,717 - QEN71_RS34995 0.64 +0.9
1,184,717 - QEN71_RS34995 0.64 +2.5
1,184,717 - QEN71_RS34995 0.64 -1.3
1,184,717 - QEN71_RS34995 0.64 -1.8
1,184,717 - QEN71_RS34995 0.64 -1.0
1,184,717 - QEN71_RS34995 0.64 -1.0
1,184,728 + QEN71_RS34995 0.64 -0.1
1,184,728 + QEN71_RS34995 0.64 -0.2
1,184,729 - QEN71_RS34995 0.64 -2.1
1,184,749 + QEN71_RS34995 0.65 +0.5
1,184,750 - QEN71_RS34995 0.65 +1.0
1,184,750 - QEN71_RS34995 0.65 -1.0
1,184,761 + QEN71_RS34995 0.66 +0.0
1,184,761 + QEN71_RS34995 0.66 -1.9
1,184,761 + QEN71_RS34995 0.66 -0.2
1,184,762 - QEN71_RS34995 0.66 -0.8
1,184,762 - QEN71_RS34995 0.66 +0.1
1,184,875 + QEN71_RS34995 0.71 +0.1
1,184,876 - QEN71_RS34995 0.71 +0.7
1,184,876 - QEN71_RS34995 0.71 +0.3
1,184,888 - QEN71_RS34995 0.71 +0.9
1,184,902 + QEN71_RS34995 0.72 +0.9
1,184,902 + QEN71_RS34995 0.72 +0.7
1,184,902 + QEN71_RS34995 0.72 +2.0
1,184,903 - QEN71_RS34995 0.72 -0.1
1,184,903 - QEN71_RS34995 0.72 +1.3
1,184,955 + QEN71_RS34995 0.74 +0.0
1,184,956 - QEN71_RS34995 0.74 -0.7
1,184,959 + QEN71_RS34995 0.75 -1.0
1,184,959 + QEN71_RS34995 0.75 +1.0
1,184,959 + QEN71_RS34995 0.75 -0.6
1,184,959 + QEN71_RS34995 0.75 -1.1
1,184,959 + QEN71_RS34995 0.75 +0.3
1,184,959 + QEN71_RS34995 0.75 +0.4
1,184,959 + QEN71_RS34995 0.75 +1.6
1,184,959 + QEN71_RS34995 0.75 -1.0
1,184,959 + QEN71_RS34995 0.75 -0.2
1,184,959 + QEN71_RS34995 0.75 -0.1
1,184,960 - QEN71_RS34995 0.75 -0.9
1,184,960 - QEN71_RS34995 0.75 -0.5
1,184,960 - QEN71_RS34995 0.75 -0.4
1,184,960 - QEN71_RS34995 0.75 -0.6
1,184,960 - QEN71_RS34995 0.75 -0.1
1,184,960 - QEN71_RS34995 0.75 +0.2
1,184,960 - QEN71_RS34995 0.75 -0.4
1,185,034 + QEN71_RS34995 0.78 -0.7
1,185,034 + QEN71_RS34995 0.78 -2.7
1,185,035 - QEN71_RS34995 0.78 -0.3
1,185,035 - QEN71_RS34995 0.78 -0.3
1,185,087 + QEN71_RS34995 0.80 +0.4
1,185,097 + QEN71_RS34995 0.81 +0.0
1,185,097 + QEN71_RS34995 0.81 +0.6
1,185,098 - QEN71_RS34995 0.81 +0.0
1,185,102 + QEN71_RS34995 0.81 -0.8
1,185,102 + QEN71_RS34995 0.81 -1.4
1,185,103 - QEN71_RS34995 0.81 -0.7
1,185,103 - QEN71_RS34995 0.81 -0.3
1,185,135 + QEN71_RS34995 0.82 +0.3
1,185,135 + QEN71_RS34995 0.82 -0.4
1,185,135 + QEN71_RS34995 0.82 +0.3
1,185,135 + QEN71_RS34995 0.82 -1.3
1,185,135 + QEN71_RS34995 0.82 +0.8
1,185,135 + QEN71_RS34995 0.82 -0.2
1,185,135 + QEN71_RS34995 0.82 +0.0
1,185,135 + QEN71_RS34995 0.82 +0.2
1,185,135 + QEN71_RS34995 0.82 -0.9
1,185,136 - QEN71_RS34995 0.83 +0.6
1,185,136 - QEN71_RS34995 0.83 -2.6
1,185,136 - QEN71_RS34995 0.83 -0.1
1,185,136 - QEN71_RS34995 0.83 +0.8
1,185,136 - QEN71_RS34995 0.83 +0.5
1,185,235 + QEN71_RS34995 0.87 -0.8
1,185,236 - QEN71_RS34995 0.87 +0.0
1,185,236 - QEN71_RS34995 0.87 +1.2
1,185,258 + QEN71_RS34995 0.88 -1.0
1,185,269 + QEN71_RS34995 0.89 -0.5
1,185,269 + QEN71_RS34995 0.89 -0.6
1,185,269 + QEN71_RS34995 0.89 +0.4
1,185,269 + QEN71_RS34995 0.89 +0.9
1,185,269 + QEN71_RS34995 0.89 +0.4
1,185,269 + QEN71_RS34995 0.89 +0.9
1,185,269 + QEN71_RS34995 0.89 -0.6
1,185,270 - QEN71_RS34995 0.89 +0.4
1,185,270 - QEN71_RS34995 0.89 -0.1
1,185,270 - QEN71_RS34995 0.89 -1.2
1,185,270 - QEN71_RS34995 0.89 -0.4
1,185,270 - QEN71_RS34995 0.89 -0.5
1,185,270 - QEN71_RS34995 0.89 -0.6
1,185,270 - QEN71_RS34995 0.89 +0.9
1,185,271 + QEN71_RS34995 0.89 +0.0
1,185,271 + QEN71_RS34995 0.89 -1.4
1,185,271 + QEN71_RS34995 0.89 -0.4
1,185,271 + QEN71_RS34995 0.89 -1.9
1,185,271 + QEN71_RS34995 0.89 +1.4
1,185,271 + QEN71_RS34995 0.89 -0.9
1,185,271 + QEN71_RS34995 0.89 -0.6
1,185,272 - QEN71_RS34995 0.89 +1.2
1,185,272 - QEN71_RS34995 0.89 -0.2
1,185,286 + QEN71_RS34995 0.89 -1.5
1,185,286 + QEN71_RS34995 0.89 -0.0
1,185,286 + QEN71_RS34995 0.89 -0.6
1,185,286 + QEN71_RS34995 0.89 +1.4
1,185,287 - QEN71_RS34995 0.89 -1.3
1,185,287 - QEN71_RS34995 0.89 +0.4
1,185,287 - QEN71_RS34995 0.89 +0.5
1,185,287 - QEN71_RS34995 0.89 +0.7
1,185,287 - QEN71_RS34995 0.89 +0.1
1,185,287 - QEN71_RS34995 0.89 +1.0
1,185,287 - QEN71_RS34995 0.89 -1.8
1,185,287 - QEN71_RS34995 0.89 -1.8
1,185,423 + +0.0
1,185,454 + +1.0
1,185,454 + +0.6
1,185,454 + -1.2
1,185,496 + -0.7
1,185,496 + -0.2
1,185,496 + +0.6
1,185,498 + +0.2
1,185,499 - +1.6
1,185,517 + +0.8
1,185,517 + +1.4
1,185,518 - +0.4
1,185,518 - +0.4
1,185,518 - +0.0
1,185,691 + QEN71_RS35000 0.13 +0.2
1,185,692 - QEN71_RS35000 0.14 +1.4
1,185,963 + QEN71_RS35000 0.42 +0.2
1,186,079 + QEN71_RS35000 0.54 -2.7
1,186,079 + QEN71_RS35000 0.54 -0.4
1,186,079 + QEN71_RS35000 0.54 -0.9
1,186,079 + QEN71_RS35000 0.54 +0.3
1,186,079 + QEN71_RS35000 0.54 -0.1
1,186,080 - QEN71_RS35000 0.54 -0.4
1,186,080 - QEN71_RS35000 0.54 +0.1
1,186,080 - QEN71_RS35000 0.54 -2.3
1,186,080 - QEN71_RS35000 0.54 -0.7
1,186,080 - QEN71_RS35000 0.54 -0.4
1,186,080 - QEN71_RS35000 0.54 -1.0
1,186,187 + QEN71_RS35000 0.66 +0.1
1,186,187 + QEN71_RS35000 0.66 +0.5
1,186,187 + QEN71_RS35000 0.66 -0.1
1,186,188 - QEN71_RS35000 0.66 +0.0
1,186,188 - QEN71_RS35000 0.66 +0.4
1,186,188 - QEN71_RS35000 0.66 -0.9
1,186,188 - QEN71_RS35000 0.66 -1.8
1,186,188 - QEN71_RS35000 0.66 -1.0
1,186,211 + QEN71_RS35000 0.68 -0.6
1,186,211 + QEN71_RS35000 0.68 +1.0
1,186,211 + QEN71_RS35000 0.68 -0.8
1,186,211 + QEN71_RS35000 0.68 -1.7
1,186,211 + QEN71_RS35000 0.68 +0.0
1,186,212 - QEN71_RS35000 0.68 -0.1
1,186,212 - QEN71_RS35000 0.68 -0.2
1,186,212 - QEN71_RS35000 0.68 -0.7
1,186,212 - QEN71_RS35000 0.68 +0.0
1,186,244 - QEN71_RS35000 0.72 +0.7
1,186,317 - QEN71_RS35000 0.79 +0.6
1,186,330 + QEN71_RS35000 0.81 +0.8
1,186,511 + -0.8
1,186,511 + -0.4
1,186,512 - +0.7
1,186,512 - -1.4
1,186,512 - +0.4
1,186,530 + -0.8
1,186,662 + -0.6
1,186,950 + QEN71_RS35005 0.22 +0.6
1,186,985 - QEN71_RS35005 0.25 -0.9
1,187,020 + QEN71_RS35005 0.28 +0.1
1,187,021 - QEN71_RS35005 0.28 -0.2
1,187,098 + QEN71_RS35005 0.35 -0.3
1,187,098 + QEN71_RS35005 0.35 +0.2
1,187,098 + QEN71_RS35005 0.35 -0.8
1,187,099 - QEN71_RS35005 0.35 +1.3
1,187,179 + QEN71_RS35005 0.42 -0.8
1,187,180 - QEN71_RS35005 0.42 -0.4
1,187,180 - QEN71_RS35005 0.42 +0.8
1,187,194 + QEN71_RS35005 0.43 +0.8
1,187,195 - QEN71_RS35005 0.43 +0.5
1,187,195 - QEN71_RS35005 0.43 +0.2
1,187,195 - QEN71_RS35005 0.43 -0.3
1,187,195 - QEN71_RS35005 0.43 +1.6
1,187,195 - QEN71_RS35005 0.43 -1.6
1,187,246 + QEN71_RS35005 0.48 -0.6
1,187,247 - QEN71_RS35005 0.48 -1.9
1,187,466 - QEN71_RS35005 0.67 -0.7

Or see this region's nucleotide sequence