Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS34490

Experiment: LB_noSalt with Zinc 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS34485 and QEN71_RS34490 are separated by 30 nucleotidesQEN71_RS34490 and QEN71_RS34495 are separated by 29 nucleotidesQEN71_RS34495 and QEN71_RS34500 are separated by 27 nucleotides QEN71_RS34485: QEN71_RS34485 - FAD-binding oxidoreductase, at 1,051,580 to 1,052,881 _RS34485 QEN71_RS34490: QEN71_RS34490 - cupin domain-containing protein, at 1,052,912 to 1,053,280 _RS34490 QEN71_RS34495: QEN71_RS34495 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 1,053,310 to 1,054,251 _RS34495 QEN71_RS34500: QEN71_RS34500 - chloride channel protein, at 1,054,279 to 1,056,099 _RS34500 Position (kb) 1052 1053 1054Strain fitness (log2 ratio) -2 -1 0 1 2at 1051.926 kb on - strand, within QEN71_RS34485at 1051.961 kb on + strand, within QEN71_RS34485at 1051.971 kb on - strand, within QEN71_RS34485at 1052.037 kb on - strand, within QEN71_RS34485at 1052.048 kb on + strand, within QEN71_RS34485at 1052.093 kb on + strand, within QEN71_RS34485at 1052.114 kb on - strand, within QEN71_RS34485at 1052.202 kb on - strand, within QEN71_RS34485at 1052.202 kb on - strand, within QEN71_RS34485at 1052.202 kb on - strand, within QEN71_RS34485at 1052.225 kb on + strand, within QEN71_RS34485at 1052.348 kb on + strand, within QEN71_RS34485at 1052.355 kb on - strand, within QEN71_RS34485at 1052.355 kb on - strand, within QEN71_RS34485at 1052.421 kb on - strand, within QEN71_RS34485at 1052.447 kb on + strand, within QEN71_RS34485at 1052.450 kb on + strand, within QEN71_RS34485at 1052.682 kb on - strand, within QEN71_RS34485at 1052.905 kb on + strandat 1052.939 kb on - strandat 1053.068 kb on + strand, within QEN71_RS34490at 1053.069 kb on - strand, within QEN71_RS34490at 1053.069 kb on - strand, within QEN71_RS34490at 1053.172 kb on + strand, within QEN71_RS34490at 1053.264 kb on - strandat 1053.378 kb on - strandat 1053.426 kb on - strand, within QEN71_RS34495at 1053.520 kb on + strand, within QEN71_RS34495at 1053.626 kb on + strand, within QEN71_RS34495at 1053.746 kb on + strand, within QEN71_RS34495at 1053.841 kb on + strand, within QEN71_RS34495at 1053.841 kb on + strand, within QEN71_RS34495at 1054.097 kb on + strand, within QEN71_RS34495at 1054.248 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
remove
1,051,926 - QEN71_RS34485 0.27 +0.7
1,051,961 + QEN71_RS34485 0.29 -0.5
1,051,971 - QEN71_RS34485 0.30 -0.5
1,052,037 - QEN71_RS34485 0.35 +1.6
1,052,048 + QEN71_RS34485 0.36 +0.7
1,052,093 + QEN71_RS34485 0.39 +0.1
1,052,114 - QEN71_RS34485 0.41 -0.0
1,052,202 - QEN71_RS34485 0.48 +1.2
1,052,202 - QEN71_RS34485 0.48 +0.5
1,052,202 - QEN71_RS34485 0.48 -0.0
1,052,225 + QEN71_RS34485 0.50 +1.0
1,052,348 + QEN71_RS34485 0.59 -1.8
1,052,355 - QEN71_RS34485 0.60 +0.8
1,052,355 - QEN71_RS34485 0.60 +0.4
1,052,421 - QEN71_RS34485 0.65 +0.1
1,052,447 + QEN71_RS34485 0.67 +1.2
1,052,450 + QEN71_RS34485 0.67 -0.4
1,052,682 - QEN71_RS34485 0.85 -0.6
1,052,905 + -1.0
1,052,939 - -1.1
1,053,068 + QEN71_RS34490 0.42 -1.3
1,053,069 - QEN71_RS34490 0.43 +0.0
1,053,069 - QEN71_RS34490 0.43 -1.0
1,053,172 + QEN71_RS34490 0.70 -0.0
1,053,264 - -0.8
1,053,378 - +1.0
1,053,426 - QEN71_RS34495 0.12 -0.8
1,053,520 + QEN71_RS34495 0.22 +0.1
1,053,626 + QEN71_RS34495 0.34 +2.6
1,053,746 + QEN71_RS34495 0.46 -0.2
1,053,841 + QEN71_RS34495 0.56 -0.1
1,053,841 + QEN71_RS34495 0.56 -0.4
1,054,097 + QEN71_RS34495 0.84 -0.1
1,054,248 - -1.8

Or see this region's nucleotide sequence