Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS19095

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS19090 and QEN71_RS19095 are separated by 30 nucleotidesQEN71_RS19095 and QEN71_RS19100 overlap by 4 nucleotidesQEN71_RS19100 and QEN71_RS19105 are separated by 176 nucleotides QEN71_RS19090: QEN71_RS19090 - IS66 family transposase, at 4,245,887 to 4,247,473 _RS19090 QEN71_RS19095: QEN71_RS19095 - IS66 family insertion sequence element accessory protein TnpB, at 4,247,504 to 4,247,848 _RS19095 QEN71_RS19100: QEN71_RS19100 - transposase, at 4,247,845 to 4,248,327 _RS19100 QEN71_RS19105: QEN71_RS19105 - hypothetical protein, at 4,248,504 to 4,248,782 _RS19105 Position (kb) 4247 4248Strain fitness (log2 ratio) -1 0 1at 4248.353 kb on + strandat 4248.353 kb on + strandat 4248.353 kb on + strandat 4248.353 kb on + strandat 4248.353 kb on + strandat 4248.353 kb on + strandat 4248.530 kb on + strandat 4248.531 kb on - strandat 4248.568 kb on + strand, within QEN71_RS19105at 4248.568 kb on + strand, within QEN71_RS19105at 4248.568 kb on + strand, within QEN71_RS19105at 4248.569 kb on - strand, within QEN71_RS19105at 4248.569 kb on - strand, within QEN71_RS19105at 4248.569 kb on - strand, within QEN71_RS19105at 4248.647 kb on + strand, within QEN71_RS19105at 4248.696 kb on - strand, within QEN71_RS19105at 4248.758 kb on + strandat 4248.758 kb on + strandat 4248.758 kb on + strandat 4248.759 kb on - strandat 4248.759 kb on - strandat 4248.759 kb on - strandat 4248.761 kb on + strandat 4248.762 kb on - strandat 4248.770 kb on + strandat 4248.770 kb on + strandat 4248.770 kb on + strandat 4248.770 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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4,248,353 + -1.5
4,248,353 + -1.3
4,248,353 + -0.6
4,248,353 + +0.3
4,248,353 + +0.1
4,248,353 + +0.9
4,248,530 + +1.2
4,248,531 - -1.0
4,248,568 + QEN71_RS19105 0.23 -1.0
4,248,568 + QEN71_RS19105 0.23 -1.6
4,248,568 + QEN71_RS19105 0.23 +1.3
4,248,569 - QEN71_RS19105 0.23 -0.8
4,248,569 - QEN71_RS19105 0.23 +0.7
4,248,569 - QEN71_RS19105 0.23 -1.5
4,248,647 + QEN71_RS19105 0.51 -1.1
4,248,696 - QEN71_RS19105 0.69 -0.9
4,248,758 + +0.2
4,248,758 + -0.8
4,248,758 + +0.7
4,248,759 - -0.3
4,248,759 - -0.3
4,248,759 - +0.1
4,248,761 + +1.0
4,248,762 - -0.0
4,248,770 + +0.4
4,248,770 + +0.1
4,248,770 + -0.9
4,248,770 + -0.3

Or see this region's nucleotide sequence