Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS09865

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS09855 and QEN71_RS09860 are separated by 9 nucleotidesQEN71_RS09860 and QEN71_RS09865 are separated by 71 nucleotidesQEN71_RS09865 and QEN71_RS09870 are separated by 232 nucleotides QEN71_RS09855: QEN71_RS09855 - peptide-methionine (S)-S-oxide reductase MsrA, at 2,198,234 to 2,198,971 _RS09855 QEN71_RS09860: QEN71_RS09860 - aldo/keto reductase, at 2,198,981 to 2,199,862 _RS09860 QEN71_RS09865: QEN71_RS09865 - RidA family protein, at 2,199,934 to 2,200,335 _RS09865 QEN71_RS09870: QEN71_RS09870 - MBL fold metallo-hydrolase, at 2,200,568 to 2,201,695 _RS09870 Position (kb) 2199 2200 2201Strain fitness (log2 ratio) -2 -1 0 1 2at 2199.066 kb on + strandat 2199.066 kb on + strandat 2199.066 kb on + strandat 2199.066 kb on + strandat 2199.067 kb on - strandat 2199.067 kb on - strandat 2199.067 kb on - strandat 2199.067 kb on - strandat 2199.067 kb on - strandat 2199.067 kb on - strandat 2199.275 kb on - strand, within QEN71_RS09860at 2199.306 kb on + strand, within QEN71_RS09860at 2199.306 kb on + strand, within QEN71_RS09860at 2199.307 kb on - strand, within QEN71_RS09860at 2199.307 kb on - strand, within QEN71_RS09860at 2199.307 kb on - strand, within QEN71_RS09860at 2199.307 kb on - strand, within QEN71_RS09860at 2199.307 kb on - strand, within QEN71_RS09860at 2199.307 kb on - strand, within QEN71_RS09860at 2199.353 kb on + strand, within QEN71_RS09860at 2199.353 kb on + strand, within QEN71_RS09860at 2199.353 kb on + strand, within QEN71_RS09860at 2199.354 kb on - strand, within QEN71_RS09860at 2199.379 kb on - strand, within QEN71_RS09860at 2199.379 kb on - strand, within QEN71_RS09860at 2199.379 kb on - strand, within QEN71_RS09860at 2199.394 kb on + strand, within QEN71_RS09860at 2199.395 kb on - strand, within QEN71_RS09860at 2199.396 kb on + strand, within QEN71_RS09860at 2199.396 kb on + strand, within QEN71_RS09860at 2199.396 kb on + strand, within QEN71_RS09860at 2199.396 kb on + strand, within QEN71_RS09860at 2199.397 kb on - strand, within QEN71_RS09860at 2199.397 kb on - strand, within QEN71_RS09860at 2199.397 kb on - strand, within QEN71_RS09860at 2199.633 kb on + strand, within QEN71_RS09860at 2199.633 kb on + strand, within QEN71_RS09860at 2199.633 kb on + strand, within QEN71_RS09860at 2199.633 kb on + strand, within QEN71_RS09860at 2199.633 kb on + strand, within QEN71_RS09860at 2199.633 kb on + strand, within QEN71_RS09860at 2199.633 kb on + strand, within QEN71_RS09860at 2199.633 kb on + strand, within QEN71_RS09860at 2199.634 kb on - strand, within QEN71_RS09860at 2199.634 kb on - strand, within QEN71_RS09860at 2199.746 kb on - strand, within QEN71_RS09860at 2200.046 kb on + strand, within QEN71_RS09865at 2200.047 kb on - strand, within QEN71_RS09865at 2200.096 kb on - strand, within QEN71_RS09865at 2200.403 kb on + strandat 2200.403 kb on + strandat 2200.404 kb on - strandat 2200.404 kb on - strandat 2200.404 kb on - strandat 2200.404 kb on - strandat 2200.404 kb on - strandat 2200.404 kb on - strandat 2200.415 kb on + strandat 2200.415 kb on + strandat 2200.415 kb on + strandat 2200.415 kb on + strandat 2200.415 kb on + strandat 2200.416 kb on - strandat 2200.416 kb on - strandat 2200.416 kb on - strandat 2200.416 kb on - strandat 2200.421 kb on - strandat 2200.539 kb on - strandat 2200.566 kb on + strandat 2200.875 kb on + strand, within QEN71_RS09870at 2200.875 kb on + strand, within QEN71_RS09870at 2200.876 kb on - strand, within QEN71_RS09870at 2200.876 kb on - strand, within QEN71_RS09870at 2200.893 kb on + strand, within QEN71_RS09870at 2200.894 kb on - strand, within QEN71_RS09870at 2200.988 kb on + strand, within QEN71_RS09870at 2200.988 kb on + strand, within QEN71_RS09870at 2200.988 kb on + strand, within QEN71_RS09870at 2200.989 kb on - strand, within QEN71_RS09870at 2201.039 kb on - strand, within QEN71_RS09870at 2201.053 kb on + strand, within QEN71_RS09870at 2201.054 kb on - strand, within QEN71_RS09870at 2201.250 kb on + strand, within QEN71_RS09870at 2201.251 kb on - strand, within QEN71_RS09870at 2201.251 kb on - strand, within QEN71_RS09870at 2201.251 kb on - strand, within QEN71_RS09870at 2201.251 kb on - strand, within QEN71_RS09870

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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2,199,066 + +0.5
2,199,066 + -0.7
2,199,066 + -1.6
2,199,066 + -0.1
2,199,067 - -0.1
2,199,067 - -0.6
2,199,067 - -0.0
2,199,067 - +0.3
2,199,067 - +0.5
2,199,067 - -0.8
2,199,275 - QEN71_RS09860 0.33 -0.8
2,199,306 + QEN71_RS09860 0.37 -0.8
2,199,306 + QEN71_RS09860 0.37 +0.3
2,199,307 - QEN71_RS09860 0.37 +0.3
2,199,307 - QEN71_RS09860 0.37 -1.5
2,199,307 - QEN71_RS09860 0.37 -0.0
2,199,307 - QEN71_RS09860 0.37 +1.2
2,199,307 - QEN71_RS09860 0.37 -1.8
2,199,307 - QEN71_RS09860 0.37 -1.7
2,199,353 + QEN71_RS09860 0.42 +0.8
2,199,353 + QEN71_RS09860 0.42 -0.0
2,199,353 + QEN71_RS09860 0.42 -0.4
2,199,354 - QEN71_RS09860 0.42 -0.2
2,199,379 - QEN71_RS09860 0.45 -0.8
2,199,379 - QEN71_RS09860 0.45 -0.2
2,199,379 - QEN71_RS09860 0.45 -0.6
2,199,394 + QEN71_RS09860 0.47 -0.3
2,199,395 - QEN71_RS09860 0.47 +0.4
2,199,396 + QEN71_RS09860 0.47 +0.9
2,199,396 + QEN71_RS09860 0.47 -1.3
2,199,396 + QEN71_RS09860 0.47 -1.4
2,199,396 + QEN71_RS09860 0.47 -0.3
2,199,397 - QEN71_RS09860 0.47 -0.2
2,199,397 - QEN71_RS09860 0.47 +0.8
2,199,397 - QEN71_RS09860 0.47 +0.7
2,199,633 + QEN71_RS09860 0.74 +0.3
2,199,633 + QEN71_RS09860 0.74 -1.1
2,199,633 + QEN71_RS09860 0.74 +0.1
2,199,633 + QEN71_RS09860 0.74 +0.7
2,199,633 + QEN71_RS09860 0.74 +0.9
2,199,633 + QEN71_RS09860 0.74 +1.3
2,199,633 + QEN71_RS09860 0.74 -1.9
2,199,633 + QEN71_RS09860 0.74 +1.0
2,199,634 - QEN71_RS09860 0.74 -0.3
2,199,634 - QEN71_RS09860 0.74 -1.1
2,199,746 - QEN71_RS09860 0.87 +0.0
2,200,046 + QEN71_RS09865 0.28 -1.0
2,200,047 - QEN71_RS09865 0.28 -0.8
2,200,096 - QEN71_RS09865 0.40 +0.1
2,200,403 + +0.3
2,200,403 + +1.7
2,200,404 - +2.4
2,200,404 - -2.6
2,200,404 - +0.4
2,200,404 - +0.9
2,200,404 - +0.1
2,200,404 - -0.3
2,200,415 + -1.2
2,200,415 + +0.9
2,200,415 + -0.4
2,200,415 + -0.6
2,200,415 + -1.8
2,200,416 - -1.0
2,200,416 - -1.1
2,200,416 - -0.2
2,200,416 - +0.3
2,200,421 - +0.3
2,200,539 - -0.5
2,200,566 + +0.6
2,200,875 + QEN71_RS09870 0.27 -2.1
2,200,875 + QEN71_RS09870 0.27 +1.0
2,200,876 - QEN71_RS09870 0.27 +0.5
2,200,876 - QEN71_RS09870 0.27 -0.5
2,200,893 + QEN71_RS09870 0.29 -0.8
2,200,894 - QEN71_RS09870 0.29 -2.5
2,200,988 + QEN71_RS09870 0.37 -0.8
2,200,988 + QEN71_RS09870 0.37 -0.4
2,200,988 + QEN71_RS09870 0.37 +1.4
2,200,989 - QEN71_RS09870 0.37 -0.1
2,201,039 - QEN71_RS09870 0.42 +0.3
2,201,053 + QEN71_RS09870 0.43 +0.3
2,201,054 - QEN71_RS09870 0.43 -1.5
2,201,250 + QEN71_RS09870 0.60 +0.6
2,201,251 - QEN71_RS09870 0.61 -0.2
2,201,251 - QEN71_RS09870 0.61 +1.3
2,201,251 - QEN71_RS09870 0.61 +1.0
2,201,251 - QEN71_RS09870 0.61 -1.1

Or see this region's nucleotide sequence