Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS05500

Experiment: LB_noSalt with Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS05495 and QEN71_RS05500 are separated by 206 nucleotidesQEN71_RS05500 and QEN71_RS05505 are separated by 248 nucleotides QEN71_RS05495: QEN71_RS05495 - DUF4397 domain-containing protein, at 1,217,343 to 1,218,131 _RS05495 QEN71_RS05500: QEN71_RS05500 - entericidin A/B family lipoprotein, at 1,218,338 to 1,218,475 _RS05500 QEN71_RS05505: QEN71_RS05505 - sensor histidine kinase, at 1,218,724 to 1,220,229 _RS05505 Position (kb) 1218 1219Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1217.535 kb on + strand, within QEN71_RS05495at 1217.535 kb on + strand, within QEN71_RS05495at 1217.535 kb on + strand, within QEN71_RS05495at 1217.535 kb on + strand, within QEN71_RS05495at 1217.536 kb on - strand, within QEN71_RS05495at 1217.589 kb on + strand, within QEN71_RS05495at 1217.589 kb on + strand, within QEN71_RS05495at 1217.590 kb on - strand, within QEN71_RS05495at 1217.590 kb on - strand, within QEN71_RS05495at 1217.590 kb on - strand, within QEN71_RS05495at 1217.590 kb on - strand, within QEN71_RS05495at 1217.658 kb on + strand, within QEN71_RS05495at 1217.658 kb on + strand, within QEN71_RS05495at 1217.658 kb on + strand, within QEN71_RS05495at 1217.658 kb on + strand, within QEN71_RS05495at 1217.658 kb on + strand, within QEN71_RS05495at 1217.658 kb on + strand, within QEN71_RS05495at 1217.796 kb on + strand, within QEN71_RS05495at 1217.796 kb on + strand, within QEN71_RS05495at 1217.797 kb on - strand, within QEN71_RS05495at 1217.797 kb on - strand, within QEN71_RS05495at 1217.898 kb on + strand, within QEN71_RS05495at 1217.898 kb on + strand, within QEN71_RS05495at 1217.898 kb on + strand, within QEN71_RS05495at 1217.898 kb on + strand, within QEN71_RS05495at 1217.898 kb on + strand, within QEN71_RS05495at 1217.898 kb on + strand, within QEN71_RS05495at 1217.899 kb on - strand, within QEN71_RS05495at 1217.899 kb on - strand, within QEN71_RS05495at 1217.899 kb on - strand, within QEN71_RS05495at 1217.899 kb on - strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.916 kb on + strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1217.917 kb on - strand, within QEN71_RS05495at 1218.113 kb on + strandat 1218.113 kb on + strandat 1218.113 kb on + strandat 1218.113 kb on + strandat 1218.113 kb on + strandat 1218.113 kb on + strandat 1218.114 kb on - strandat 1218.114 kb on - strandat 1218.114 kb on - strandat 1218.114 kb on - strandat 1218.114 kb on - strandat 1218.511 kb on - strandat 1218.519 kb on + strandat 1218.519 kb on + strandat 1218.519 kb on + strandat 1218.520 kb on - strandat 1218.520 kb on - strandat 1218.520 kb on - strandat 1218.520 kb on - strandat 1218.520 kb on - strandat 1218.520 kb on - strandat 1218.520 kb on - strandat 1218.520 kb on - strandat 1218.642 kb on + strandat 1218.642 kb on + strandat 1218.642 kb on + strandat 1218.642 kb on + strandat 1218.642 kb on + strandat 1218.643 kb on - strandat 1218.643 kb on - strandat 1218.643 kb on - strandat 1218.643 kb on - strandat 1218.643 kb on - strandat 1218.933 kb on + strand, within QEN71_RS05505at 1218.934 kb on - strand, within QEN71_RS05505at 1218.934 kb on - strand, within QEN71_RS05505at 1218.934 kb on - strand, within QEN71_RS05505at 1218.934 kb on - strand, within QEN71_RS05505at 1219.046 kb on + strand, within QEN71_RS05505at 1219.046 kb on + strand, within QEN71_RS05505at 1219.047 kb on - strand, within QEN71_RS05505at 1219.047 kb on - strand, within QEN71_RS05505at 1219.047 kb on - strand, within QEN71_RS05505at 1219.352 kb on + strand, within QEN71_RS05505

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Zinc 0.5 mM
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1,217,535 + QEN71_RS05495 0.24 -0.6
1,217,535 + QEN71_RS05495 0.24 +1.3
1,217,535 + QEN71_RS05495 0.24 -0.6
1,217,535 + QEN71_RS05495 0.24 -2.2
1,217,536 - QEN71_RS05495 0.24 -3.3
1,217,589 + QEN71_RS05495 0.31 -0.4
1,217,589 + QEN71_RS05495 0.31 -1.5
1,217,590 - QEN71_RS05495 0.31 +0.6
1,217,590 - QEN71_RS05495 0.31 -2.3
1,217,590 - QEN71_RS05495 0.31 -0.6
1,217,590 - QEN71_RS05495 0.31 -0.5
1,217,658 + QEN71_RS05495 0.40 -0.3
1,217,658 + QEN71_RS05495 0.40 +0.9
1,217,658 + QEN71_RS05495 0.40 -3.7
1,217,658 + QEN71_RS05495 0.40 -0.9
1,217,658 + QEN71_RS05495 0.40 -0.9
1,217,658 + QEN71_RS05495 0.40 +0.2
1,217,796 + QEN71_RS05495 0.57 +1.9
1,217,796 + QEN71_RS05495 0.57 -0.8
1,217,797 - QEN71_RS05495 0.58 +0.8
1,217,797 - QEN71_RS05495 0.58 -0.3
1,217,898 + QEN71_RS05495 0.70 +0.1
1,217,898 + QEN71_RS05495 0.70 -0.1
1,217,898 + QEN71_RS05495 0.70 -0.4
1,217,898 + QEN71_RS05495 0.70 -0.9
1,217,898 + QEN71_RS05495 0.70 +0.0
1,217,898 + QEN71_RS05495 0.70 +0.4
1,217,899 - QEN71_RS05495 0.70 +0.7
1,217,899 - QEN71_RS05495 0.70 -0.2
1,217,899 - QEN71_RS05495 0.70 -0.1
1,217,899 - QEN71_RS05495 0.70 -0.5
1,217,916 + QEN71_RS05495 0.73 -1.2
1,217,916 + QEN71_RS05495 0.73 +0.1
1,217,916 + QEN71_RS05495 0.73 -0.3
1,217,916 + QEN71_RS05495 0.73 -0.3
1,217,916 + QEN71_RS05495 0.73 -0.9
1,217,916 + QEN71_RS05495 0.73 -0.8
1,217,916 + QEN71_RS05495 0.73 -1.9
1,217,916 + QEN71_RS05495 0.73 -0.9
1,217,916 + QEN71_RS05495 0.73 -0.6
1,217,916 + QEN71_RS05495 0.73 +0.9
1,217,917 - QEN71_RS05495 0.73 -0.6
1,217,917 - QEN71_RS05495 0.73 -0.4
1,217,917 - QEN71_RS05495 0.73 -0.6
1,217,917 - QEN71_RS05495 0.73 -0.8
1,217,917 - QEN71_RS05495 0.73 -0.2
1,217,917 - QEN71_RS05495 0.73 -0.1
1,217,917 - QEN71_RS05495 0.73 -0.1
1,217,917 - QEN71_RS05495 0.73 +0.0
1,217,917 - QEN71_RS05495 0.73 +0.3
1,217,917 - QEN71_RS05495 0.73 +0.5
1,217,917 - QEN71_RS05495 0.73 -0.7
1,217,917 - QEN71_RS05495 0.73 -0.5
1,217,917 - QEN71_RS05495 0.73 -0.2
1,217,917 - QEN71_RS05495 0.73 -1.5
1,217,917 - QEN71_RS05495 0.73 -3.2
1,217,917 - QEN71_RS05495 0.73 -0.5
1,218,113 + -1.9
1,218,113 + -0.2
1,218,113 + -2.4
1,218,113 + -0.7
1,218,113 + -0.3
1,218,113 + +0.5
1,218,114 - -0.2
1,218,114 - -0.4
1,218,114 - -0.2
1,218,114 - +1.5
1,218,114 - -0.3
1,218,511 - -1.1
1,218,519 + +0.2
1,218,519 + +0.7
1,218,519 + +0.0
1,218,520 - -0.3
1,218,520 - +0.9
1,218,520 - -0.9
1,218,520 - -0.9
1,218,520 - -1.4
1,218,520 - -0.9
1,218,520 - -0.8
1,218,520 - -0.7
1,218,642 + +0.6
1,218,642 + -0.1
1,218,642 + -0.4
1,218,642 + +0.0
1,218,642 + -0.3
1,218,643 - +0.3
1,218,643 - -0.9
1,218,643 - +2.1
1,218,643 - -0.2
1,218,643 - -1.2
1,218,933 + QEN71_RS05505 0.14 +0.9
1,218,934 - QEN71_RS05505 0.14 +0.1
1,218,934 - QEN71_RS05505 0.14 +0.1
1,218,934 - QEN71_RS05505 0.14 -0.4
1,218,934 - QEN71_RS05505 0.14 -0.2
1,219,046 + QEN71_RS05505 0.21 +1.1
1,219,046 + QEN71_RS05505 0.21 +1.5
1,219,047 - QEN71_RS05505 0.21 +0.0
1,219,047 - QEN71_RS05505 0.21 -1.1
1,219,047 - QEN71_RS05505 0.21 -0.4
1,219,352 + QEN71_RS05505 0.42 +0.9

Or see this region's nucleotide sequence