Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04136 and MIT1002_04137 are separated by 370 nucleotides MIT1002_04137 and MIT1002_04138 are separated by 57 nucleotides MIT1002_04138 and MIT1002_04139 are separated by 3 nucleotides
MIT1002_04136: MIT1002_04136 - hypothetical protein, at 2,705 to 2,887
_04136
MIT1002_04137: MIT1002_04137 - hypothetical protein, at 3,258 to 3,992
_04137
MIT1002_04138: MIT1002_04138 - hypothetical protein, at 4,050 to 4,268
_04138
MIT1002_04139: MIT1002_04139 - hypothetical protein, at 4,272 to 4,784
_04139
Position (kb) 3
4 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 2.260 kb on - strand at 2.260 kb on - strand at 2.275 kb on + strand at 2.275 kb on + strand at 2.283 kb on - strand at 2.297 kb on - strand at 2.301 kb on + strand at 2.447 kb on - strand at 2.519 kb on - strand at 2.521 kb on + strand at 2.529 kb on - strand at 2.529 kb on - strand at 2.534 kb on + strand at 2.537 kb on - strand at 2.538 kb on - strand at 2.539 kb on + strand at 2.542 kb on - strand at 2.547 kb on - strand at 2.554 kb on - strand at 2.569 kb on + strand at 2.577 kb on - strand at 2.608 kb on + strand at 2.609 kb on - strand at 2.616 kb on + strand at 2.616 kb on + strand at 2.616 kb on - strand at 2.623 kb on + strand at 2.623 kb on + strand at 2.624 kb on - strand at 2.624 kb on - strand at 2.624 kb on - strand at 2.630 kb on - strand at 2.630 kb on - strand at 2.631 kb on - strand at 2.667 kb on + strand at 2.744 kb on - strand, within MIT1002_04136 at 2.748 kb on + strand, within MIT1002_04136 at 2.756 kb on - strand, within MIT1002_04136 at 2.783 kb on + strand, within MIT1002_04136 at 2.783 kb on - strand, within MIT1002_04136 at 2.791 kb on + strand, within MIT1002_04136 at 2.793 kb on - strand, within MIT1002_04136 at 2.793 kb on - strand, within MIT1002_04136 at 2.798 kb on - strand, within MIT1002_04136 at 2.812 kb on + strand, within MIT1002_04136 at 2.812 kb on + strand, within MIT1002_04136 at 2.812 kb on + strand, within MIT1002_04136 at 2.817 kb on + strand, within MIT1002_04136 at 2.820 kb on - strand, within MIT1002_04136 at 2.825 kb on - strand, within MIT1002_04136 at 2.854 kb on + strand, within MIT1002_04136 at 2.854 kb on + strand, within MIT1002_04136 at 2.854 kb on + strand, within MIT1002_04136 at 2.854 kb on + strand, within MIT1002_04136 at 2.862 kb on - strand, within MIT1002_04136 at 2.862 kb on - strand, within MIT1002_04136 at 2.862 kb on - strand, within MIT1002_04136 at 2.862 kb on - strand, within MIT1002_04136 at 2.862 kb on - strand, within MIT1002_04136 at 2.862 kb on - strand, within MIT1002_04136 at 2.922 kb on + strand at 2.936 kb on + strand at 2.936 kb on + strand at 2.944 kb on - strand at 2.944 kb on - strand at 2.944 kb on - strand at 2.972 kb on + strand at 2.985 kb on - strand at 2.985 kb on - strand at 2.985 kb on - strand at 2.985 kb on - strand at 2.985 kb on - strand at 2.985 kb on - strand at 2.985 kb on - strand at 3.018 kb on + strand at 3.018 kb on + strand at 3.018 kb on + strand at 3.035 kb on + strand at 3.059 kb on + strand at 3.064 kb on + strand at 3.064 kb on + strand at 3.122 kb on - strand at 3.125 kb on - strand at 3.142 kb on + strand at 3.186 kb on + strand at 3.187 kb on - strand at 3.196 kb on - strand at 3.202 kb on - strand at 3.217 kb on + strand at 3.217 kb on + strand at 3.225 kb on - strand at 3.225 kb on - strand at 3.225 kb on - strand at 3.225 kb on - strand at 3.230 kb on - strand at 3.257 kb on - strand at 3.325 kb on - strand at 3.333 kb on - strand, within MIT1002_04137 at 3.340 kb on - strand, within MIT1002_04137 at 3.401 kb on + strand, within MIT1002_04137 at 3.437 kb on + strand, within MIT1002_04137 at 3.437 kb on + strand, within MIT1002_04137 at 3.437 kb on - strand, within MIT1002_04137 at 3.445 kb on - strand, within MIT1002_04137 at 3.445 kb on - strand, within MIT1002_04137 at 3.445 kb on - strand, within MIT1002_04137 at 3.452 kb on + strand, within MIT1002_04137 at 3.455 kb on - strand, within MIT1002_04137 at 3.522 kb on + strand, within MIT1002_04137 at 3.522 kb on + strand, within MIT1002_04137 at 3.530 kb on - strand, within MIT1002_04137 at 3.557 kb on + strand, within MIT1002_04137 at 3.583 kb on - strand, within MIT1002_04137 at 3.583 kb on - strand, within MIT1002_04137 at 3.634 kb on + strand, within MIT1002_04137 at 3.634 kb on + strand, within MIT1002_04137 at 3.634 kb on + strand, within MIT1002_04137 at 3.634 kb on + strand, within MIT1002_04137 at 3.634 kb on + strand, within MIT1002_04137 at 3.642 kb on - strand, within MIT1002_04137 at 3.642 kb on - strand, within MIT1002_04137 at 3.661 kb on - strand, within MIT1002_04137 at 3.663 kb on - strand, within MIT1002_04137 at 3.702 kb on + strand, within MIT1002_04137 at 3.710 kb on + strand, within MIT1002_04137 at 3.757 kb on - strand, within MIT1002_04137 at 3.801 kb on + strand, within MIT1002_04137 at 3.801 kb on + strand, within MIT1002_04137 at 3.801 kb on + strand, within MIT1002_04137 at 3.801 kb on + strand, within MIT1002_04137 at 3.809 kb on + strand, within MIT1002_04137 at 3.809 kb on + strand, within MIT1002_04137 at 3.809 kb on - strand, within MIT1002_04137 at 3.817 kb on + strand, within MIT1002_04137 at 3.817 kb on - strand, within MIT1002_04137 at 3.817 kb on - strand, within MIT1002_04137 at 3.817 kb on - strand, within MIT1002_04137 at 3.852 kb on + strand, within MIT1002_04137 at 3.906 kb on - strand, within MIT1002_04137 at 3.914 kb on - strand, within MIT1002_04137 at 3.915 kb on - strand, within MIT1002_04137 at 3.928 kb on + strand at 3.936 kb on - strand at 3.943 kb on + strand at 3.973 kb on + strand at 4.079 kb on - strand, within MIT1002_04138 at 4.107 kb on + strand, within MIT1002_04138 at 4.111 kb on - strand, within MIT1002_04138 at 4.115 kb on - strand, within MIT1002_04138 at 4.122 kb on - strand, within MIT1002_04138 at 4.122 kb on - strand, within MIT1002_04138 at 4.123 kb on - strand, within MIT1002_04138 at 4.133 kb on + strand, within MIT1002_04138 at 4.133 kb on - strand, within MIT1002_04138 at 4.140 kb on + strand, within MIT1002_04138 at 4.141 kb on - strand, within MIT1002_04138 at 4.141 kb on - strand, within MIT1002_04138 at 4.199 kb on - strand, within MIT1002_04138 at 4.226 kb on + strand, within MIT1002_04138 at 4.229 kb on + strand, within MIT1002_04138 at 4.229 kb on + strand, within MIT1002_04138 at 4.229 kb on + strand, within MIT1002_04138 at 4.231 kb on + strand, within MIT1002_04138 at 4.231 kb on + strand, within MIT1002_04138 at 4.231 kb on + strand, within MIT1002_04138 at 4.234 kb on - strand, within MIT1002_04138 at 4.237 kb on - strand, within MIT1002_04138 at 4.237 kb on - strand, within MIT1002_04138 at 4.239 kb on - strand, within MIT1002_04138 at 4.239 kb on - strand, within MIT1002_04138 at 4.239 kb on - strand, within MIT1002_04138 at 4.239 kb on - strand, within MIT1002_04138 at 4.239 kb on - strand, within MIT1002_04138 at 4.239 kb on - strand, within MIT1002_04138 at 4.239 kb on - strand, within MIT1002_04138 at 4.239 kb on - strand, within MIT1002_04138 at 4.250 kb on + strand at 4.293 kb on - strand at 4.396 kb on + strand, within MIT1002_04139 at 4.396 kb on + strand, within MIT1002_04139 at 4.396 kb on + strand, within MIT1002_04139 at 4.396 kb on + strand, within MIT1002_04139 at 4.396 kb on + strand, within MIT1002_04139 at 4.396 kb on + strand, within MIT1002_04139 at 4.396 kb on + strand, within MIT1002_04139 at 4.404 kb on - strand, within MIT1002_04139 at 4.404 kb on - strand, within MIT1002_04139 at 4.404 kb on - strand, within MIT1002_04139 at 4.404 kb on - strand, within MIT1002_04139 at 4.404 kb on - strand, within MIT1002_04139 at 4.418 kb on - strand, within MIT1002_04139 at 4.425 kb on + strand, within MIT1002_04139 at 4.430 kb on + strand, within MIT1002_04139 at 4.474 kb on + strand, within MIT1002_04139 at 4.485 kb on + strand, within MIT1002_04139 at 4.493 kb on - strand, within MIT1002_04139 at 4.506 kb on + strand, within MIT1002_04139 at 4.514 kb on - strand, within MIT1002_04139 at 4.535 kb on + strand, within MIT1002_04139 at 4.575 kb on - strand, within MIT1002_04139 at 4.591 kb on + strand, within MIT1002_04139 at 4.654 kb on + strand, within MIT1002_04139 at 4.752 kb on - strand at 4.752 kb on - strand at 4.820 kb on + strand at 4.827 kb on + strand at 4.828 kb on - strand at 4.828 kb on - strand at 4.843 kb on + strand at 4.868 kb on + strand at 4.868 kb on - strand at 4.882 kb on + strand at 4.882 kb on + strand at 4.882 kb on + strand at 4.882 kb on + strand at 4.884 kb on - strand at 4.887 kb on + strand at 4.887 kb on + strand at 4.890 kb on - strand at 4.890 kb on - strand at 4.890 kb on - strand at 4.890 kb on - strand at 4.890 kb on - strand at 4.890 kb on - strand at 4.890 kb on - strand at 4.895 kb on - strand at 4.911 kb on + strand at 4.956 kb on - strand at 4.980 kb on - strand at 4.982 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5 remove 2,260 - +2.6 2,260 - +1.5 2,275 + -1.1 2,275 + -0.7 2,283 - -2.0 2,297 - +0.7 2,301 + +1.6 2,447 - -0.4 2,519 - +0.5 2,521 + +0.3 2,529 - +0.6 2,529 - +0.7 2,534 + -0.6 2,537 - -0.9 2,538 - -0.2 2,539 + +0.7 2,542 - -1.5 2,547 - +2.0 2,554 - +1.0 2,569 + -1.2 2,577 - -0.0 2,608 + +1.0 2,609 - -1.5 2,616 + +0.1 2,616 + -0.8 2,616 - +0.3 2,623 + +0.3 2,623 + -0.8 2,624 - -2.6 2,624 - -0.4 2,624 - +0.3 2,630 - -2.1 2,630 - +1.3 2,631 - -1.2 2,667 + +0.2 2,744 - MIT1002_04136 0.21 +0.4 2,748 + MIT1002_04136 0.23 +0.6 2,756 - MIT1002_04136 0.28 +1.6 2,783 + MIT1002_04136 0.43 -1.1 2,783 - MIT1002_04136 0.43 -0.1 2,791 + MIT1002_04136 0.47 +1.9 2,793 - MIT1002_04136 0.48 +0.5 2,793 - MIT1002_04136 0.48 -1.3 2,798 - MIT1002_04136 0.51 -0.2 2,812 + MIT1002_04136 0.58 -0.1 2,812 + MIT1002_04136 0.58 -2.2 2,812 + MIT1002_04136 0.58 -0.1 2,817 + MIT1002_04136 0.61 +1.3 2,820 - MIT1002_04136 0.63 +1.3 2,825 - MIT1002_04136 0.66 -0.4 2,854 + MIT1002_04136 0.81 +1.3 2,854 + MIT1002_04136 0.81 -0.7 2,854 + MIT1002_04136 0.81 +0.2 2,854 + MIT1002_04136 0.81 +0.9 2,862 - MIT1002_04136 0.86 -0.1 2,862 - MIT1002_04136 0.86 +1.3 2,862 - MIT1002_04136 0.86 -0.0 2,862 - MIT1002_04136 0.86 +0.5 2,862 - MIT1002_04136 0.86 +0.9 2,862 - MIT1002_04136 0.86 +0.1 2,922 + -2.4 2,936 + -1.8 2,936 + -1.7 2,944 - -0.0 2,944 - +0.4 2,944 - -0.2 2,972 + -0.0 2,985 - +1.1 2,985 - -1.5 2,985 - -1.8 2,985 - -1.8 2,985 - +2.1 2,985 - +0.3 2,985 - +1.4 3,018 + +0.9 3,018 + +0.5 3,018 + +0.0 3,035 + -0.2 3,059 + -1.0 3,064 + -1.9 3,064 + +0.5 3,122 - +1.4 3,125 - -1.5 3,142 + -2.3 3,186 + +0.9 3,187 - -1.6 3,196 - +0.9 3,202 - +1.6 3,217 + +1.5 3,217 + -0.3 3,225 - -0.8 3,225 - +0.2 3,225 - -0.6 3,225 - +0.0 3,230 - -1.6 3,257 - +1.2 3,325 - -0.0 3,333 - MIT1002_04137 0.10 +0.1 3,340 - MIT1002_04137 0.11 -1.8 3,401 + MIT1002_04137 0.19 +0.4 3,437 + MIT1002_04137 0.24 +0.6 3,437 + MIT1002_04137 0.24 +0.3 3,437 - MIT1002_04137 0.24 +1.6 3,445 - MIT1002_04137 0.25 +0.2 3,445 - MIT1002_04137 0.25 +0.4 3,445 - MIT1002_04137 0.25 +1.3 3,452 + MIT1002_04137 0.26 -1.1 3,455 - MIT1002_04137 0.27 -0.9 3,522 + MIT1002_04137 0.36 +1.1 3,522 + MIT1002_04137 0.36 +0.4 3,530 - MIT1002_04137 0.37 -0.1 3,557 + MIT1002_04137 0.41 +0.9 3,583 - MIT1002_04137 0.44 -0.0 3,583 - MIT1002_04137 0.44 +0.4 3,634 + MIT1002_04137 0.51 +1.3 3,634 + MIT1002_04137 0.51 -0.1 3,634 + MIT1002_04137 0.51 +0.3 3,634 + MIT1002_04137 0.51 -0.0 3,634 + MIT1002_04137 0.51 -0.9 3,642 - MIT1002_04137 0.52 +0.3 3,642 - MIT1002_04137 0.52 +1.1 3,661 - MIT1002_04137 0.55 +1.2 3,663 - MIT1002_04137 0.55 -1.5 3,702 + MIT1002_04137 0.60 -0.5 3,710 + MIT1002_04137 0.61 +0.8 3,757 - MIT1002_04137 0.68 -0.5 3,801 + MIT1002_04137 0.74 -0.5 3,801 + MIT1002_04137 0.74 -0.7 3,801 + MIT1002_04137 0.74 -0.7 3,801 + MIT1002_04137 0.74 -2.4 3,809 + MIT1002_04137 0.75 -3.2 3,809 + MIT1002_04137 0.75 -0.4 3,809 - MIT1002_04137 0.75 +0.8 3,817 + MIT1002_04137 0.76 +0.2 3,817 - MIT1002_04137 0.76 +0.2 3,817 - MIT1002_04137 0.76 +1.6 3,817 - MIT1002_04137 0.76 -1.2 3,852 + MIT1002_04137 0.81 +0.1 3,906 - MIT1002_04137 0.88 +0.4 3,914 - MIT1002_04137 0.89 -2.2 3,915 - MIT1002_04137 0.89 -0.2 3,928 + -0.5 3,936 - +1.3 3,943 + -0.2 3,973 + +0.2 4,079 - MIT1002_04138 0.13 -0.8 4,107 + MIT1002_04138 0.26 -0.3 4,111 - MIT1002_04138 0.28 -2.6 4,115 - MIT1002_04138 0.30 -1.0 4,122 - MIT1002_04138 0.33 +0.2 4,122 - MIT1002_04138 0.33 -0.3 4,123 - MIT1002_04138 0.33 +0.5 4,133 + MIT1002_04138 0.38 +0.6 4,133 - MIT1002_04138 0.38 +0.3 4,140 + MIT1002_04138 0.41 +1.0 4,141 - MIT1002_04138 0.42 -0.1 4,141 - MIT1002_04138 0.42 +0.6 4,199 - MIT1002_04138 0.68 +1.0 4,226 + MIT1002_04138 0.80 +0.4 4,229 + MIT1002_04138 0.82 +0.2 4,229 + MIT1002_04138 0.82 -0.1 4,229 + MIT1002_04138 0.82 +1.1 4,231 + MIT1002_04138 0.83 -0.8 4,231 + MIT1002_04138 0.83 -0.1 4,231 + MIT1002_04138 0.83 +0.1 4,234 - MIT1002_04138 0.84 +0.0 4,237 - MIT1002_04138 0.85 -0.5 4,237 - MIT1002_04138 0.85 +1.4 4,239 - MIT1002_04138 0.86 +0.9 4,239 - MIT1002_04138 0.86 -1.2 4,239 - MIT1002_04138 0.86 +0.4 4,239 - MIT1002_04138 0.86 -0.4 4,239 - MIT1002_04138 0.86 +2.2 4,239 - MIT1002_04138 0.86 -0.3 4,239 - MIT1002_04138 0.86 +0.4 4,239 - MIT1002_04138 0.86 +0.7 4,250 + +0.1 4,293 - +0.6 4,396 + MIT1002_04139 0.24 -0.1 4,396 + MIT1002_04139 0.24 +0.3 4,396 + MIT1002_04139 0.24 -1.7 4,396 + MIT1002_04139 0.24 -1.0 4,396 + MIT1002_04139 0.24 +1.3 4,396 + MIT1002_04139 0.24 +2.0 4,396 + MIT1002_04139 0.24 -1.9 4,404 - MIT1002_04139 0.26 +0.7 4,404 - MIT1002_04139 0.26 -0.6 4,404 - MIT1002_04139 0.26 -0.6 4,404 - MIT1002_04139 0.26 +1.5 4,404 - MIT1002_04139 0.26 -0.0 4,418 - MIT1002_04139 0.28 -0.2 4,425 + MIT1002_04139 0.30 -0.2 4,430 + MIT1002_04139 0.31 +0.0 4,474 + MIT1002_04139 0.39 +1.4 4,485 + MIT1002_04139 0.42 -1.7 4,493 - MIT1002_04139 0.43 +0.6 4,506 + MIT1002_04139 0.46 -2.7 4,514 - MIT1002_04139 0.47 +0.7 4,535 + MIT1002_04139 0.51 -0.5 4,575 - MIT1002_04139 0.59 -0.1 4,591 + MIT1002_04139 0.62 -1.5 4,654 + MIT1002_04139 0.74 -0.1 4,752 - -0.4 4,752 - +0.4 4,820 + +0.3 4,827 + +0.5 4,828 - +0.5 4,828 - +0.0 4,843 + -1.0 4,868 + +0.1 4,868 - -1.4 4,882 + -0.1 4,882 + +1.4 4,882 + +0.6 4,882 + -0.0 4,884 - -0.2 4,887 + -1.7 4,887 + -1.1 4,890 - -0.2 4,890 - -1.6 4,890 - -0.9 4,890 - +4.2 4,890 - +1.0 4,890 - +1.5 4,890 - -0.1 4,895 - -0.5 4,911 + +0.2 4,956 - -0.6 4,980 - +0.3 4,982 - -0.2
Or see this region's nucleotide sequence