Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03475

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
3,882,543	-		MIT1002_03473	0.89	-0.3
3,882,560	+				-0.9
3,882,560	+				-0.4
3,882,568	-				+0.0
3,882,595	-				-1.5
3,882,632	+				+0.1
3,882,652	+				-0.8
3,882,652	+				+2.1
3,882,759	+				+1.4
3,882,913	+				+1.9
3,882,943	+				-1.5
3,882,958	+				-0.5
3,882,958	-				-0.1
3,882,958	-				-1.1
3,883,101	+		MIT1002_03474	0.28	+0.5
3,883,108	-		MIT1002_03474	0.30	+0.8
3,883,134	-		MIT1002_03474	0.35	+0.4
3,883,177	-		MIT1002_03474	0.43	+1.3
3,883,191	+		MIT1002_03474	0.46	+1.4
3,883,191	+		MIT1002_03474	0.46	+0.1
3,883,199	-		MIT1002_03474	0.47	-1.1
3,883,199	-		MIT1002_03474	0.47	+11.2
3,883,199	-		MIT1002_03474	0.47	+0.7
3,883,199	-		MIT1002_03474	0.47	-0.1
3,883,206	-		MIT1002_03474	0.49	-0.5
3,883,209	-		MIT1002_03474	0.49	-0.1
3,883,222	+		MIT1002_03474	0.52	-0.3
3,883,285	+		MIT1002_03474	0.64	+0.0
3,883,363	+		MIT1002_03474	0.79	-3.3
3,883,437	+				+0.6
3,883,502	-				-0.0
3,883,514	+				-2.0
3,883,661	-		MIT1002_03475	0.12	-0.8
3,883,732	+		MIT1002_03475	0.19	+0.2
3,883,795	-		MIT1002_03475	0.25	-3.5
3,883,854	+		MIT1002_03475	0.31	-0.9
3,883,857	+		MIT1002_03475	0.31	-0.7
3,883,865	-		MIT1002_03475	0.32	-0.5
3,884,046	+		MIT1002_03475	0.50	+1.0
3,884,056	+		MIT1002_03475	0.51	+1.3
3,884,056	+		MIT1002_03475	0.51	-1.3
3,884,164	+		MIT1002_03475	0.62	-1.0
3,884,218	+		MIT1002_03475	0.67	-1.4
3,884,229	+		MIT1002_03475	0.68	+1.1
3,884,237	-		MIT1002_03475	0.69	-1.2
3,884,237	-		MIT1002_03475	0.69	-0.4
3,884,323	-		MIT1002_03475	0.78	+1.3
3,884,373	-		MIT1002_03475	0.83	-1.1
3,884,408	+		MIT1002_03475	0.86	+1.4
3,884,408	+		MIT1002_03475	0.86	-0.5
3,884,408	+		MIT1002_03475	0.86	+3.0
3,884,408	+		MIT1002_03475	0.86	-1.4
3,884,408	+		MIT1002_03475	0.86	+0.3
3,884,408	+		MIT1002_03475	0.86	-2.1
3,884,411	-		MIT1002_03475	0.86	-1.7
3,884,416	-		MIT1002_03475	0.87	+0.5
3,884,416	-		MIT1002_03475	0.87	+0.6
3,884,416	-		MIT1002_03475	0.87	+0.7
3,884,416	-		MIT1002_03475	0.87	-1.0
3,884,416	-		MIT1002_03475	0.87	-0.1
3,884,416	-		MIT1002_03475	0.87	+1.0
3,884,432	+		MIT1002_03475	0.88	-1.1
3,884,442	-		MIT1002_03475	0.89	-1.3
3,884,510	+				+1.3
3,884,518	-				+0.1
3,884,518	-				-1.9
3,884,518	-				+0.4
3,884,546	+				+1.0
3,884,606	+				+1.3
3,884,612	-				-1.1
3,884,670	+				+3.1
3,884,693	-				-1.7
3,884,703	+				-0.3
3,884,737	+				+0.3
3,884,737	+				-1.8
3,884,745	-				-0.9
3,884,747	-				+3.0
3,884,863	-		MIT1002_03476	0.15	-1.1
3,884,863	-		MIT1002_03476	0.15	+0.1
3,884,988	+		MIT1002_03476	0.29	-0.5
3,885,063	+		MIT1002_03476	0.38	-0.2
3,885,070	+		MIT1002_03476	0.38	+1.4
3,885,070	+		MIT1002_03476	0.38	-1.0
3,885,078	-		MIT1002_03476	0.39	+0.4
3,885,080	+		MIT1002_03476	0.40	-0.0
3,885,080	+		MIT1002_03476	0.40	+0.7
3,885,140	+		MIT1002_03476	0.46	+0.5
3,885,149	-		MIT1002_03476	0.47	+0.9
3,885,149	-		MIT1002_03476	0.47	-0.7
3,885,266	-		MIT1002_03476	0.60	+0.6
3,885,346	+		MIT1002_03476	0.69	+1.9
3,885,354	-		MIT1002_03476	0.70	+0.7
3,885,354	-		MIT1002_03476	0.70	-0.0
3,885,363	-		MIT1002_03476	0.71	-1.7
3,885,367	+		MIT1002_03476	0.72	-1.0
3,885,408	+		MIT1002_03476	0.76	+1.4
3,885,458	+		MIT1002_03476	0.82	-0.9
3,885,465	+		MIT1002_03476	0.83	+0.2
3,885,470	+		MIT1002_03476	0.83	+1.3
3,885,521	+		MIT1002_03476	0.89	+0.6