Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03375

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
3,775,265	+		MIT1002_03373	0.71	+0.3
3,775,318	+		MIT1002_03373	0.75	-1.5
3,775,326	-		MIT1002_03373	0.76	-1.7
3,775,415	+		MIT1002_03373	0.82	+1.2
3,775,427	+		MIT1002_03373	0.83	-0.7
3,775,566	-				+0.3
3,775,609	-				+1.3
3,775,609	-				+0.5
3,775,609	-				+1.5
3,775,919	-		MIT1002_03374	0.62	-2.4
3,775,988	+		MIT1002_03374	0.85	-0.7
3,775,989	+		MIT1002_03374	0.85	-0.0
3,775,998	-		MIT1002_03374	0.88	-1.1
3,776,022	-				-1.4
3,776,022	-				-1.1
3,776,047	+				-1.5
3,776,047	+				+0.9
3,776,055	+				-2.5
3,776,055	+				-0.4
3,776,055	+				+0.2
3,776,069	+				-0.7
3,776,077	-				+2.2
3,776,077	-				-1.5
3,776,077	-				-2.0
3,776,087	+				-1.1
3,776,198	+				-1.2
3,776,227	+		MIT1002_03375	0.12	-1.3
3,776,227	+		MIT1002_03375	0.12	-0.8
3,776,235	-		MIT1002_03375	0.13	+0.4
3,776,245	-		MIT1002_03375	0.15	+1.8
3,776,252	+		MIT1002_03375	0.16	-0.6
3,776,252	-		MIT1002_03375	0.16	-0.0
3,776,295	+		MIT1002_03375	0.24	+0.8
3,776,364	+		MIT1002_03375	0.36	+0.1
3,776,381	+		MIT1002_03375	0.39	-0.8
3,776,416	+		MIT1002_03375	0.45	+1.1
3,776,550	+		MIT1002_03375	0.69	-1.5
3,776,558	-		MIT1002_03375	0.70	-1.6
3,776,573	-		MIT1002_03375	0.73	+0.8
3,776,584	+		MIT1002_03375	0.75	-0.2
3,776,584	+		MIT1002_03375	0.75	+0.9
3,776,704	+				-0.9
3,776,764	+				+1.9
3,776,795	-				-2.2
3,776,795	-				-0.7
3,776,795	-				+0.0
3,776,811	-				-0.1
3,776,856	-				-0.7
3,776,895	+				+0.3
3,776,923	+				-0.8
3,776,976	-		MIT1002_03376	0.11	-0.0
3,776,978	+		MIT1002_03376	0.11	-0.2
3,776,981	+		MIT1002_03376	0.12	-1.0
3,776,981	+		MIT1002_03376	0.12	+1.9
3,776,986	-		MIT1002_03376	0.12	-0.2
3,776,986	-		MIT1002_03376	0.12	-0.7
3,777,015	-		MIT1002_03376	0.13	+0.4
3,777,139	+		MIT1002_03376	0.19	-0.7
3,777,139	+		MIT1002_03376	0.19	+1.8
3,777,147	-		MIT1002_03376	0.19	+0.2
3,777,197	-		MIT1002_03376	0.21	+3.5
3,777,223	-		MIT1002_03376	0.22	-1.8
3,777,302	+		MIT1002_03376	0.26	-1.2
3,777,304	+		MIT1002_03376	0.26	-0.8
3,777,310	-		MIT1002_03376	0.26	-0.8
3,777,367	-		MIT1002_03376	0.29	+1.6
3,777,474	+		MIT1002_03376	0.34	-0.1
3,777,558	+		MIT1002_03376	0.37	-0.7
3,777,626	+		MIT1002_03376	0.41	-0.1
3,777,634	-		MIT1002_03376	0.41	-0.3
3,777,697	+		MIT1002_03376	0.44	-1.8