Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02460

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
2,749,313	-				+0.6
2,749,396	-				-1.5
2,749,500	+				+1.7
2,749,500	+				-3.2
2,749,508	-				-0.4
2,749,508	-				-0.5
2,749,516	-		MIT1002_02459	0.10	-0.7
2,749,594	+		MIT1002_02459	0.19	-1.4
2,749,595	-		MIT1002_02459	0.19	+0.2
2,749,603	-		MIT1002_02459	0.20	-0.9
2,749,610	+		MIT1002_02459	0.21	+1.1
2,749,656	+		MIT1002_02459	0.26	-0.2
2,749,820	+		MIT1002_02459	0.45	+0.6
2,749,828	-		MIT1002_02459	0.46	+2.7
2,749,838	-		MIT1002_02459	0.47	-0.9
2,749,838	-		MIT1002_02459	0.47	-0.3
2,749,853	-		MIT1002_02459	0.49	+1.1
2,749,856	+		MIT1002_02459	0.49	-1.4
2,749,856	+		MIT1002_02459	0.49	-0.3
2,749,856	+		MIT1002_02459	0.49	-0.7
2,749,856	+		MIT1002_02459	0.49	-1.0
2,749,864	-		MIT1002_02459	0.50	-0.1
2,749,864	-		MIT1002_02459	0.50	-0.3
2,749,864	-		MIT1002_02459	0.50	-1.7
2,749,864	-		MIT1002_02459	0.50	+0.9
2,749,864	-		MIT1002_02459	0.50	-1.6
2,749,864	-		MIT1002_02459	0.50	+0.8
2,749,872	-		MIT1002_02459	0.51	-1.6
2,749,962	-		MIT1002_02459	0.61	-0.4
2,749,963	-		MIT1002_02459	0.62	-1.1
2,750,025	+		MIT1002_02459	0.69	+0.6
2,750,028	-		MIT1002_02459	0.69	-2.2
2,750,028	-		MIT1002_02459	0.69	-1.4
2,750,086	-		MIT1002_02459	0.76	-0.7
2,750,086	-		MIT1002_02459	0.76	-0.0
2,750,086	-		MIT1002_02459	0.76	-0.7
2,750,105	+		MIT1002_02459	0.78	+0.6
2,750,135	-		MIT1002_02459	0.81	+0.6
2,750,135	-		MIT1002_02459	0.81	+0.5
2,750,135	-		MIT1002_02459	0.81	+2.6
2,750,203	-		MIT1002_02459	0.89	+1.5
2,750,207	+		MIT1002_02459	0.90	-0.7
2,750,208	-		MIT1002_02459	0.90	-0.3
2,750,208	-		MIT1002_02459	0.90	-0.3
2,750,224	+				-1.2
2,750,242	+				+1.4
2,750,298	-				-1.2
2,750,358	+				+1.0
2,750,368	+				+0.4
2,750,375	+				-0.3
2,750,375	+				+0.7
2,750,375	+				-1.1
2,750,375	+				-0.4
2,750,383	-				-0.0
2,750,419	-				-0.1
2,750,500	-		MIT1002_02460	0.16	-0.3
2,750,531	+		MIT1002_02460	0.19	-0.5
2,750,531	+		MIT1002_02460	0.19	+0.5
2,750,606	-		MIT1002_02460	0.26	+0.3
2,750,706	+		MIT1002_02460	0.34	+0.6
2,750,706	+		MIT1002_02460	0.34	+0.1
2,750,706	+		MIT1002_02460	0.34	-0.4
2,750,706	+		MIT1002_02460	0.34	-0.6
2,750,706	+		MIT1002_02460	0.34	+1.2
2,750,714	-		MIT1002_02460	0.35	-2.0
2,750,728	+		MIT1002_02460	0.36	+1.7
2,750,729	+		MIT1002_02460	0.36	+0.6
2,750,736	-		MIT1002_02460	0.37	-0.6
2,750,741	+		MIT1002_02460	0.37	+2.5
2,750,755	-		MIT1002_02460	0.39	-0.6
2,750,759	-		MIT1002_02460	0.39	+1.3
2,750,870	-		MIT1002_02460	0.48	-0.1
2,750,883	-		MIT1002_02460	0.50	-0.5
2,750,934	+		MIT1002_02460	0.54	-0.1
2,750,976	-		MIT1002_02460	0.58	-0.1
2,750,999	-		MIT1002_02460	0.60	-1.4
2,751,035	-		MIT1002_02460	0.63	-1.3
2,751,094	-		MIT1002_02460	0.68	-1.3
2,751,117	-		MIT1002_02460	0.70	-1.7
2,751,133	+		MIT1002_02460	0.71	+0.6
2,751,141	-		MIT1002_02460	0.72	-0.6
2,751,296	-		MIT1002_02460	0.85	-0.9
2,751,322	-		MIT1002_02460	0.88	-0.8
2,751,333	+		MIT1002_02460	0.89	+0.3
2,751,385	-				-0.4
2,751,399	-				-1.3
2,751,399	-				+0.1
2,751,590	-				-1.5
2,751,604	+				-1.0
2,751,610	-				+0.7
2,751,620	-				+0.3
2,751,665	+		MIT1002_02461	0.12	+0.2
2,751,685	+		MIT1002_02461	0.14	-0.6
2,751,711	+		MIT1002_02461	0.16	+0.5
2,751,750	+		MIT1002_02461	0.20	+0.2
2,751,847	+		MIT1002_02461	0.29	+0.5
2,751,916	+		MIT1002_02461	0.35	+0.5
2,751,941	+		MIT1002_02461	0.37	-0.8
2,751,944	-		MIT1002_02461	0.37	-0.3
2,751,947	+		MIT1002_02461	0.38	-2.0
2,751,954	-		MIT1002_02461	0.38	+2.5
2,751,987	-		MIT1002_02461	0.41	+0.2
2,751,994	+		MIT1002_02461	0.42	+0.6
2,752,002	-		MIT1002_02461	0.43	+0.3
2,752,016	+		MIT1002_02461	0.44	-0.7
2,752,017	+		MIT1002_02461	0.44	-1.2
2,752,050	+		MIT1002_02461	0.47	-0.2
2,752,072	+		MIT1002_02461	0.49	+1.4
2,752,139	+		MIT1002_02461	0.55	+0.9
2,752,139	+		MIT1002_02461	0.55	+0.9
2,752,147	-		MIT1002_02461	0.56	-0.5
2,752,147	-		MIT1002_02461	0.56	-0.1
2,752,163	+		MIT1002_02461	0.57	-1.1
2,752,221	+		MIT1002_02461	0.62	+1.2
2,752,232	+		MIT1002_02461	0.63	-0.5
2,752,244	+		MIT1002_02461	0.64	+0.3
2,752,269	+		MIT1002_02461	0.67	-0.4
2,752,320	+		MIT1002_02461	0.71	-2.5
2,752,328	-		MIT1002_02461	0.72	-1.5
2,752,331	+		MIT1002_02461	0.72	-0.6
2,752,366	-		MIT1002_02461	0.76	-0.8
2,752,437	-		MIT1002_02461	0.82	+0.6
2,752,446	+		MIT1002_02461	0.83	-2.5
2,752,454	-		MIT1002_02461	0.83	-0.4
2,752,454	-		MIT1002_02461	0.83	-0.9