Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02430

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
2,712,246	-		MIT1002_02429	0.22	-1.9
2,712,266	-		MIT1002_02429	0.24	+0.5
2,712,300	-		MIT1002_02429	0.28	-5.4
2,712,304	+		MIT1002_02429	0.28	-2.1
2,712,312	+		MIT1002_02429	0.29	-4.3
2,712,312	+		MIT1002_02429	0.29	-4.8
2,712,312	+		MIT1002_02429	0.29	-3.0
2,712,312	+		MIT1002_02429	0.29	-3.1
2,712,312	-		MIT1002_02429	0.29	-2.9
2,712,320	-		MIT1002_02429	0.30	-1.6
2,712,348	-		MIT1002_02429	0.32	-3.7
2,712,594	+		MIT1002_02429	0.57	-2.4
2,712,594	+		MIT1002_02429	0.57	-0.2
2,712,610	-		MIT1002_02429	0.58	-4.3
2,712,623	+		MIT1002_02429	0.59	-1.9
2,712,661	+		MIT1002_02429	0.63	-1.9
2,712,661	+		MIT1002_02429	0.63	-1.5
2,712,671	+		MIT1002_02429	0.64	-2.2
2,712,671	+		MIT1002_02429	0.64	-2.8
2,712,679	-		MIT1002_02429	0.65	-2.2
2,712,880	-		MIT1002_02429	0.85	-2.5
2,712,886	-		MIT1002_02429	0.85	-2.8
2,712,893	-		MIT1002_02429	0.86	-3.3
2,712,901	-		MIT1002_02429	0.87	-3.3
2,712,959	-				-3.6
2,712,967	-				-2.1
2,712,967	-				-3.9
2,712,990	+				-3.0
2,712,998	-				-0.5
2,713,250	+				+0.3
2,713,296	+				-1.2
2,713,314	-				-0.4
2,713,353	+				+0.6
2,713,487	+		MIT1002_02430	0.16	+0.7
2,713,532	+		MIT1002_02430	0.19	-0.3
2,713,569	+		MIT1002_02430	0.22	+1.2
2,713,600	+		MIT1002_02430	0.24	-1.5
2,713,641	+		MIT1002_02430	0.27	+0.2
2,713,641	+		MIT1002_02430	0.27	+0.0
2,713,649	-		MIT1002_02430	0.27	-0.6
2,713,734	-		MIT1002_02430	0.33	+0.2
2,713,734	-		MIT1002_02430	0.33	-1.3
2,713,747	+		MIT1002_02430	0.34	-2.0
2,713,752	+		MIT1002_02430	0.34	-1.8
2,713,785	+		MIT1002_02430	0.36	-0.5
2,713,785	+		MIT1002_02430	0.36	+1.7
2,713,785	+		MIT1002_02430	0.36	-1.4
2,713,785	+		MIT1002_02430	0.36	+0.9
2,713,785	+		MIT1002_02430	0.36	-2.4
2,713,793	-		MIT1002_02430	0.37	-1.6
2,713,808	+		MIT1002_02430	0.38	+0.2
2,713,809	-		MIT1002_02430	0.38	+0.8
2,713,824	+		MIT1002_02430	0.39	+1.3
2,713,832	-		MIT1002_02430	0.39	+1.2
2,713,832	-		MIT1002_02430	0.39	-0.1
2,713,955	-		MIT1002_02430	0.48	-0.2
2,713,983	-		MIT1002_02430	0.49	-0.0
2,713,993	+		MIT1002_02430	0.50	-0.9
2,714,036	+		MIT1002_02430	0.53	-0.5
2,714,075	+		MIT1002_02430	0.56	-0.5
2,714,082	+		MIT1002_02430	0.56	-1.5
2,714,082	-		MIT1002_02430	0.56	+0.7
2,714,082	-		MIT1002_02430	0.56	-1.8
2,714,083	-		MIT1002_02430	0.56	+0.4
2,714,160	+		MIT1002_02430	0.61	-2.4
2,714,168	-		MIT1002_02430	0.62	-0.3
2,714,321	+		MIT1002_02430	0.72	+1.3
2,714,334	+		MIT1002_02430	0.73	-1.8
2,714,334	+		MIT1002_02430	0.73	+0.8
2,714,342	+		MIT1002_02430	0.74	+0.1
2,714,355	+		MIT1002_02430	0.74	+1.9
2,714,367	+		MIT1002_02430	0.75	-1.3
2,714,367	+		MIT1002_02430	0.75	+1.4
2,714,375	-		MIT1002_02430	0.76	-0.9
2,714,375	-		MIT1002_02430	0.76	-1.2
2,714,375	-		MIT1002_02430	0.76	-0.8
2,714,375	-		MIT1002_02430	0.76	+0.6
2,714,375	-		MIT1002_02430	0.76	-0.0
2,714,408	-		MIT1002_02430	0.78	+3.0
2,714,541	+		MIT1002_02430	0.87	+0.8
2,714,579	+		MIT1002_02430	0.89	+0.3
2,714,621	-				+0.8
2,714,631	-				-0.8
2,714,730	+				+0.0
2,714,730	+				+1.2
2,714,740	-				-0.2
2,714,888	-				+0.8
2,714,888	-				+0.5
2,714,928	+		MIT1002_02431	0.13	-0.4
2,714,936	-		MIT1002_02431	0.13	-1.2
2,714,951	+		MIT1002_02431	0.14	+1.7
2,714,951	+		MIT1002_02431	0.14	-0.5
2,714,974	-		MIT1002_02431	0.16	+0.4
2,714,982	+		MIT1002_02431	0.17	-0.8
2,714,990	-		MIT1002_02431	0.17	+0.2
2,715,086	+		MIT1002_02431	0.24	-1.3
2,715,102	-		MIT1002_02431	0.25	+2.2
2,715,123	+		MIT1002_02431	0.27	-0.1
2,715,170	-		MIT1002_02431	0.30	-1.0
2,715,184	+		MIT1002_02431	0.31	+1.1
2,715,184	+		MIT1002_02431	0.31	+0.8
2,715,192	-		MIT1002_02431	0.31	+0.0
2,715,206	-		MIT1002_02431	0.32	+0.6
2,715,215	+		MIT1002_02431	0.33	+1.6
2,715,239	-		MIT1002_02431	0.35	-1.7
2,715,241	+		MIT1002_02431	0.35	+1.8
2,715,267	+		MIT1002_02431	0.37	-0.7
2,715,296	+		MIT1002_02431	0.39	-1.0
2,715,296	+		MIT1002_02431	0.39	-0.3
2,715,328	+		MIT1002_02431	0.41	+0.0
2,715,328	+		MIT1002_02431	0.41	-1.3
2,715,328	-		MIT1002_02431	0.41	-0.4
2,715,335	-		MIT1002_02431	0.42	+0.5
2,715,336	-		MIT1002_02431	0.42	-0.8
2,715,363	+		MIT1002_02431	0.44	-1.0
2,715,404	+		MIT1002_02431	0.46	-0.5
2,715,412	-		MIT1002_02431	0.47	-1.3
2,715,420	-		MIT1002_02431	0.48	-0.9
2,715,477	+		MIT1002_02431	0.52	+0.2
2,715,526	+		MIT1002_02431	0.55	+0.6
2,715,529	-		MIT1002_02431	0.55	+2.5
2,715,533	+		MIT1002_02431	0.56	+0.6
2,715,579	+		MIT1002_02431	0.59	-0.8
2,715,587	-		MIT1002_02431	0.59	+2.0
2,715,641	+		MIT1002_02431	0.63	+1.2
2,715,644	-		MIT1002_02431	0.63	-0.3
2,715,661	+		MIT1002_02431	0.65	+1.7
2,715,693	-		MIT1002_02431	0.67	-0.1
2,715,697	+		MIT1002_02431	0.67	+0.6
2,715,725	+		MIT1002_02431	0.69	-0.7