Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02242

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
2,503,971	-				+0.3
2,503,973	-				+5.0
2,504,011	+				+1.2
2,504,079	+				+0.2
2,504,152	+		MIT1002_02241	0.30	+1.0
2,504,173	-		MIT1002_02241	0.37	-0.2
2,504,188	+		MIT1002_02241	0.42	-0.7
2,504,196	-		MIT1002_02241	0.45	+0.3
2,504,196	-		MIT1002_02241	0.45	-0.3
2,504,243	-		MIT1002_02241	0.60	+0.7
2,504,243	-		MIT1002_02241	0.60	-0.9
2,504,246	+		MIT1002_02241	0.61	+0.1
2,504,306	+		MIT1002_02241	0.81	+0.1
2,504,342	-				-0.8
2,504,358	-				-0.8
2,504,377	-				-0.4
2,504,401	-				+1.2
2,504,405	+				-1.4
2,504,405	+				+0.9
2,504,413	-				+2.5
2,504,415	+				-0.9
2,504,423	-				+1.2
2,504,452	+				-1.8
2,504,452	+				+0.0
2,504,452	+				+0.9
2,504,452	+				+0.2
2,504,459	+				+0.7
2,504,460	-				-0.9
2,504,460	-				+2.8
2,504,460	-				-2.3
2,504,460	-				+2.3
2,504,460	-				+0.4
2,504,674	-		MIT1002_02242	0.41	+1.0
2,504,738	-		MIT1002_02242	0.56	+1.8
2,504,767	-		MIT1002_02242	0.63	+1.0
2,504,780	+		MIT1002_02242	0.66	-3.2
2,504,783	-		MIT1002_02242	0.67	+0.6
2,504,800	+		MIT1002_02242	0.71	-0.1
2,504,817	+		MIT1002_02242	0.75	+0.6
2,504,830	-		MIT1002_02242	0.78	-0.1
2,504,835	+		MIT1002_02242	0.79	-0.3
2,504,843	-		MIT1002_02242	0.81	+0.4
2,504,843	-		MIT1002_02242	0.81	-0.2
2,504,843	-		MIT1002_02242	0.81	+0.5
2,504,867	+		MIT1002_02242	0.87	+2.5
2,504,874	-		MIT1002_02242	0.89	-1.5
2,504,915	+				+2.0
2,504,945	-				+1.1
2,504,948	-				+0.0
2,504,948	-				-0.5
2,505,087	+		MIT1002_02243	0.10	-1.0
2,505,143	-		MIT1002_02243	0.36	+0.5
2,505,200	-		MIT1002_02243	0.61	+0.2
2,505,200	-		MIT1002_02243	0.61	+0.7
2,505,229	+		MIT1002_02243	0.74	+1.0
2,505,287	-				+0.0
2,505,287	-				-1.0
2,505,298	+				-1.5
2,505,324	+				+1.6
2,505,332	-				+1.7
2,505,366	+				+0.9
2,505,366	+				-0.8
2,505,374	-				-2.4
2,505,516	-		MIT1002_02244	0.22	+1.0
2,505,562	-		MIT1002_02244	0.43	+1.8
2,505,603	-		MIT1002_02244	0.62	-2.3
2,505,791	+		MIT1002_02245	0.34	+0.9
2,505,822	-		MIT1002_02245	0.45	-0.3
2,505,865	-		MIT1002_02245	0.59	+0.9
2,505,869	+		MIT1002_02245	0.61	-0.5
2,505,877	-		MIT1002_02245	0.63	-1.2