Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02030

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
2,272,846	+				+1.4
2,272,997	-				-0.6
2,273,075	-				-1.8
2,273,075	-				-1.2
2,273,172	+		MIT1002_02029	0.46	-2.6
2,273,180	-		MIT1002_02029	0.49	+0.7
2,273,232	+		MIT1002_02029	0.71	-1.0
2,273,291	-				+0.2
2,273,358	-				+1.1
2,273,361	-				-2.3
2,273,361	-				+1.6
2,273,393	-				-1.3
2,273,539	-				-0.1
2,273,589	+				-0.4
2,273,597	-				+1.7
2,273,609	-				+0.3
2,273,693	+				-1.1
2,273,693	+				+1.9
2,273,701	-				+2.6
2,273,826	+				+2.1
2,273,896	+		MIT1002_02030	0.13	-1.8
2,273,931	+		MIT1002_02030	0.14	+2.2
2,273,954	-		MIT1002_02030	0.15	-0.5
2,273,955	-		MIT1002_02030	0.15	+0.2
2,273,958	+		MIT1002_02030	0.16	+3.0
2,273,983	+		MIT1002_02030	0.17	+0.5
2,274,088	+		MIT1002_02030	0.22	+0.6
2,274,110	+		MIT1002_02030	0.23	+1.5
2,274,148	+		MIT1002_02030	0.25	+1.2
2,274,151	-		MIT1002_02030	0.25	+1.7
2,274,156	-		MIT1002_02030	0.25	+0.6
2,274,159	+		MIT1002_02030	0.25	+1.4
2,274,161	-		MIT1002_02030	0.25	+4.1
2,274,161	-		MIT1002_02030	0.25	+2.8
2,274,167	-		MIT1002_02030	0.26	+1.2
2,274,175	-		MIT1002_02030	0.26	+1.2
2,274,231	+		MIT1002_02030	0.29	+0.6
2,274,250	+		MIT1002_02030	0.30	+0.5
2,274,285	-		MIT1002_02030	0.31	+1.7
2,274,362	+		MIT1002_02030	0.35	+1.7
2,274,362	+		MIT1002_02030	0.35	+1.3
2,274,370	-		MIT1002_02030	0.36	-4.6
2,274,547	+		MIT1002_02030	0.44	-0.9
2,274,616	+		MIT1002_02030	0.48	+0.7
2,274,676	-		MIT1002_02030	0.50	+1.6
2,274,707	+		MIT1002_02030	0.52	-0.3
2,274,774	+		MIT1002_02030	0.55	+1.0
2,274,808	-		MIT1002_02030	0.57	+2.0
2,274,841	-		MIT1002_02030	0.58	+1.6
2,274,841	-		MIT1002_02030	0.58	-0.4
2,274,915	+		MIT1002_02030	0.62	+1.2
2,274,971	+		MIT1002_02030	0.65	+0.5
2,275,042	+		MIT1002_02030	0.68	+0.5
2,275,042	+		MIT1002_02030	0.68	+1.6
2,275,049	+		MIT1002_02030	0.69	+3.0
2,275,050	-		MIT1002_02030	0.69	+1.6
2,275,055	-		MIT1002_02030	0.69	+2.9
2,275,077	+		MIT1002_02030	0.70	+0.5
2,275,127	+		MIT1002_02030	0.72	+1.6
2,275,136	-		MIT1002_02030	0.73	+0.8
2,275,140	+		MIT1002_02030	0.73	+1.2
2,275,478	-		MIT1002_02030	0.89	+1.6
2,275,502	+				+1.1
2,275,606	+				+2.9
2,275,606	+				-0.1
2,275,614	-				+0.9
2,275,651	+				+0.3
2,275,699	-				+1.4
2,275,749	+				+2.5
2,275,782	+				+0.8
2,275,857	-		MIT1002_02031	0.11	+1.7
2,275,889	-		MIT1002_02031	0.13	+0.2
2,275,907	-		MIT1002_02031	0.15	+0.6
2,275,909	+		MIT1002_02031	0.15	+1.5
2,275,917	+		MIT1002_02031	0.15	+2.6
2,275,925	-		MIT1002_02031	0.16	+0.9
2,275,930	-		MIT1002_02031	0.16	+1.0
2,276,031	+		MIT1002_02031	0.24	+0.9
2,276,052	+		MIT1002_02031	0.25	-0.4
2,276,052	+		MIT1002_02031	0.25	+0.8
2,276,217	-		MIT1002_02031	0.37	+0.9
2,276,224	-		MIT1002_02031	0.38	+0.9
2,276,250	+		MIT1002_02031	0.40	+1.5
2,276,250	+		MIT1002_02031	0.40	+1.0
2,276,258	-		MIT1002_02031	0.40	+1.1
2,276,287	+		MIT1002_02031	0.42	+1.4
2,276,342	+		MIT1002_02031	0.46	+1.2
2,276,423	+		MIT1002_02031	0.52	+0.7
2,276,431	-		MIT1002_02031	0.53	-2.4
2,276,431	-		MIT1002_02031	0.53	+0.7
2,276,431	-		MIT1002_02031	0.53	+1.2
2,276,431	-		MIT1002_02031	0.53	+1.6
2,276,494	+		MIT1002_02031	0.57	+0.6
2,276,494	+		MIT1002_02031	0.57	-0.6
2,276,494	+		MIT1002_02031	0.57	+1.0
2,276,494	+		MIT1002_02031	0.57	+0.9
2,276,497	-		MIT1002_02031	0.58	+1.2
2,276,502	-		MIT1002_02031	0.58	+0.4
2,276,502	-		MIT1002_02031	0.58	+1.2
2,276,502	-		MIT1002_02031	0.58	+0.4
2,276,502	-		MIT1002_02031	0.58	-1.2
2,276,502	-		MIT1002_02031	0.58	+1.0
2,276,502	-		MIT1002_02031	0.58	-0.1
2,276,502	-		MIT1002_02031	0.58	+1.6
2,276,515	+		MIT1002_02031	0.59	+1.5
2,276,552	+		MIT1002_02031	0.62	+0.6
2,276,576	+		MIT1002_02031	0.63	+0.8