Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01906

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
2,116,756	-		MIT1002_01904	0.64	-2.4
2,116,838	-		MIT1002_01904	0.72	-0.2
2,116,838	-		MIT1002_01904	0.72	+1.4
2,116,838	-		MIT1002_01904	0.72	+0.3
2,116,871	+		MIT1002_01904	0.75	-1.8
2,116,934	-		MIT1002_01904	0.81	-0.2
2,116,938	+		MIT1002_01904	0.82	-0.1
2,117,003	+		MIT1002_01904	0.88	-1.0
2,117,042	+				+1.8
2,117,052	-				+1.1
2,117,065	-				+1.2
2,117,066	-				-0.1
2,117,125	-				+1.5
2,117,133	+				-0.3
2,117,134	-				+1.0
2,117,138	+				-3.0
2,117,138	+				+1.0
2,117,140	-				-1.0
2,117,146	+				-0.5
2,117,162	-				+2.8
2,117,277	-				+1.3
2,117,323	-				-1.9
2,117,341	+		MIT1002_01905	0.12	+0.3
2,117,419	+		MIT1002_01905	0.37	-0.6
2,117,419	+		MIT1002_01905	0.37	-2.0
2,117,427	-		MIT1002_01905	0.39	+1.4
2,117,427	-		MIT1002_01905	0.39	-1.8
2,117,434	-		MIT1002_01905	0.42	+1.5
2,117,506	-		MIT1002_01905	0.64	-2.3
2,117,506	-		MIT1002_01905	0.64	+0.8
2,117,564	+		MIT1002_01905	0.82	-2.2
2,117,564	+		MIT1002_01905	0.82	+0.0
2,117,564	+		MIT1002_01905	0.82	-0.8
2,117,564	+		MIT1002_01905	0.82	-0.9
2,117,564	+		MIT1002_01905	0.82	-1.6
2,117,564	+		MIT1002_01905	0.82	+1.3
2,117,564	+		MIT1002_01905	0.82	+0.6
2,117,572	-		MIT1002_01905	0.85	-0.2
2,117,572	-		MIT1002_01905	0.85	+0.6
2,117,572	-		MIT1002_01905	0.85	-1.3
2,117,572	-		MIT1002_01905	0.85	+0.1
2,117,572	-		MIT1002_01905	0.85	-0.7
2,117,572	-		MIT1002_01905	0.85	-0.9
2,117,572	-		MIT1002_01905	0.85	+0.8
2,117,572	-		MIT1002_01905	0.85	+1.3
2,117,572	-		MIT1002_01905	0.85	+2.4
2,117,572	-		MIT1002_01905	0.85	+0.2
2,117,572	-		MIT1002_01905	0.85	-0.5
2,117,572	-		MIT1002_01905	0.85	-0.6
2,117,572	-		MIT1002_01905	0.85	+0.3
2,117,580	+		MIT1002_01905	0.87	-0.4
2,117,580	+		MIT1002_01905	0.87	-0.9
2,117,580	+		MIT1002_01905	0.87	+2.0
2,117,588	-				-0.5
2,117,588	-				+1.4
2,117,597	+				-0.0
2,117,598	-				-1.9
2,117,619	+				-0.1
2,117,706	-				+0.8
2,117,721	+				+1.4
2,117,754	+				-3.0
2,117,824	+		MIT1002_01906	0.28	+0.7
2,117,824	+		MIT1002_01906	0.28	+0.2
2,117,832	-		MIT1002_01906	0.30	+2.5
2,117,832	-		MIT1002_01906	0.30	+0.8
2,117,832	-		MIT1002_01906	0.30	+1.6
2,117,852	+		MIT1002_01906	0.38	-1.4
2,117,877	+		MIT1002_01906	0.46	+0.9
2,117,885	-		MIT1002_01906	0.49	-2.0
2,117,917	+		MIT1002_01906	0.61	-1.7
2,117,931	-		MIT1002_01906	0.66	+0.2
2,118,011	+				+0.3
2,118,012	+				-0.2
2,118,104	+				-1.7
2,118,104	+				+0.3
2,118,112	-				-1.5
2,118,112	-				-0.6
2,118,143	+				+3.0
2,118,197	+		MIT1002_01907	0.12	+0.5
2,118,201	+		MIT1002_01907	0.13	-0.1
2,118,201	+		MIT1002_01907	0.13	+0.5
2,118,201	+		MIT1002_01907	0.13	-1.0
2,118,201	+		MIT1002_01907	0.13	-0.8
2,118,209	-		MIT1002_01907	0.13	-1.2
2,118,209	-		MIT1002_01907	0.13	+0.8
2,118,209	-		MIT1002_01907	0.13	-0.2
2,118,209	-		MIT1002_01907	0.13	+0.8
2,118,209	-		MIT1002_01907	0.13	-1.9
2,118,252	+		MIT1002_01907	0.18	-0.9
2,118,252	+		MIT1002_01907	0.18	+0.3
2,118,252	+		MIT1002_01907	0.18	-1.2
2,118,252	+		MIT1002_01907	0.18	+2.6
2,118,260	-		MIT1002_01907	0.19	-0.9
2,118,260	-		MIT1002_01907	0.19	+1.5
2,118,574	+		MIT1002_01907	0.52	-1.1
2,118,577	+		MIT1002_01907	0.52	+0.4
2,118,583	+		MIT1002_01907	0.53	-0.5
2,118,606	+		MIT1002_01907	0.56	-0.9
2,118,620	+		MIT1002_01907	0.57	+0.4
2,118,628	-		MIT1002_01907	0.58	-2.0
2,118,670	+		MIT1002_01907	0.62	+1.3
2,118,678	-		MIT1002_01907	0.63	+0.0
2,118,683	-		MIT1002_01907	0.64	-0.0
2,118,757	+		MIT1002_01907	0.72	+0.2
2,118,763	+		MIT1002_01907	0.72	+1.8
2,118,771	-		MIT1002_01907	0.73	+0.4
2,118,784	+		MIT1002_01907	0.74	-1.2
2,118,785	-		MIT1002_01907	0.75	+1.0
2,118,792	-		MIT1002_01907	0.75	+0.7
2,118,815	+		MIT1002_01907	0.78	-0.8
2,118,879	+		MIT1002_01907	0.85	+0.3
2,118,952	-				+0.1
2,118,966	+				+0.4
2,118,966	+				+1.4
2,118,967	-				+0.4
2,118,967	-				+0.8
2,119,010	-				-1.4