Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00872 and MIT1002_00873 are separated by 187 nucleotides MIT1002_00873 and MIT1002_00874 are separated by 209 nucleotides MIT1002_00874 and MIT1002_00875 overlap by 8 nucleotides
MIT1002_00872: MIT1002_00872 - Polyphosphate kinase, at 962,018 to 964,090
_00872
MIT1002_00873: MIT1002_00873 - formyltetrahydrofolate deformylase, at 964,278 to 964,784
_00873
MIT1002_00874: MIT1002_00874 - Phosphate transport system permease protein PstC, at 964,994 to 967,171
_00874
MIT1002_00875: MIT1002_00875 - Phosphate transport system permease protein PstA, at 967,164 to 968,723
_00875
Position (kb) 964
965
966
967
968 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 964.070 kb on + strand at 964.070 kb on + strand at 964.256 kb on - strand at 964.322 kb on + strand at 964.322 kb on + strand at 964.340 kb on - strand, within MIT1002_00873 at 964.340 kb on - strand, within MIT1002_00873 at 964.437 kb on + strand, within MIT1002_00873 at 964.473 kb on + strand, within MIT1002_00873 at 964.481 kb on - strand, within MIT1002_00873 at 964.487 kb on - strand, within MIT1002_00873 at 964.514 kb on - strand, within MIT1002_00873 at 964.591 kb on - strand, within MIT1002_00873 at 964.614 kb on - strand, within MIT1002_00873 at 964.659 kb on + strand, within MIT1002_00873 at 964.680 kb on + strand, within MIT1002_00873 at 964.686 kb on - strand, within MIT1002_00873 at 964.693 kb on - strand, within MIT1002_00873 at 964.717 kb on + strand, within MIT1002_00873 at 964.717 kb on + strand, within MIT1002_00873 at 964.717 kb on + strand, within MIT1002_00873 at 964.717 kb on + strand, within MIT1002_00873 at 964.725 kb on - strand, within MIT1002_00873 at 964.744 kb on + strand at 964.757 kb on - strand at 964.772 kb on - strand at 964.792 kb on + strand at 964.844 kb on - strand at 964.858 kb on - strand at 964.894 kb on + strand at 964.910 kb on + strand at 964.918 kb on + strand at 964.920 kb on + strand at 964.920 kb on + strand at 964.926 kb on - strand at 964.926 kb on - strand at 964.926 kb on - strand at 965.005 kb on - strand at 965.060 kb on - strand at 965.126 kb on + strand at 965.137 kb on + strand at 965.145 kb on - strand at 965.145 kb on - strand at 965.186 kb on - strand at 965.223 kb on - strand, within MIT1002_00874 at 965.269 kb on - strand, within MIT1002_00874 at 965.332 kb on + strand, within MIT1002_00874 at 965.433 kb on + strand, within MIT1002_00874 at 965.473 kb on + strand, within MIT1002_00874 at 965.481 kb on + strand, within MIT1002_00874 at 965.497 kb on + strand, within MIT1002_00874 at 965.497 kb on + strand, within MIT1002_00874 at 965.497 kb on + strand, within MIT1002_00874 at 965.497 kb on + strand, within MIT1002_00874 at 965.497 kb on + strand, within MIT1002_00874 at 965.530 kb on + strand, within MIT1002_00874 at 965.532 kb on + strand, within MIT1002_00874 at 965.537 kb on + strand, within MIT1002_00874 at 965.540 kb on - strand, within MIT1002_00874 at 965.540 kb on - strand, within MIT1002_00874 at 965.570 kb on + strand, within MIT1002_00874 at 965.570 kb on + strand, within MIT1002_00874 at 965.598 kb on + strand, within MIT1002_00874 at 965.613 kb on + strand, within MIT1002_00874 at 965.613 kb on + strand, within MIT1002_00874 at 965.621 kb on - strand, within MIT1002_00874 at 965.692 kb on - strand, within MIT1002_00874 at 965.764 kb on + strand, within MIT1002_00874 at 965.818 kb on - strand, within MIT1002_00874 at 965.845 kb on + strand, within MIT1002_00874 at 965.890 kb on - strand, within MIT1002_00874 at 965.962 kb on - strand, within MIT1002_00874 at 965.980 kb on - strand, within MIT1002_00874 at 966.105 kb on + strand, within MIT1002_00874 at 966.122 kb on + strand, within MIT1002_00874 at 966.138 kb on + strand, within MIT1002_00874 at 966.155 kb on - strand, within MIT1002_00874 at 966.242 kb on + strand, within MIT1002_00874 at 966.281 kb on - strand, within MIT1002_00874 at 966.281 kb on - strand, within MIT1002_00874 at 966.283 kb on - strand, within MIT1002_00874 at 966.306 kb on - strand, within MIT1002_00874 at 966.550 kb on - strand, within MIT1002_00874 at 966.573 kb on + strand, within MIT1002_00874 at 966.573 kb on + strand, within MIT1002_00874 at 966.578 kb on + strand, within MIT1002_00874 at 966.603 kb on - strand, within MIT1002_00874 at 966.718 kb on + strand, within MIT1002_00874 at 966.718 kb on - strand, within MIT1002_00874 at 966.738 kb on + strand, within MIT1002_00874 at 966.746 kb on - strand, within MIT1002_00874 at 966.842 kb on + strand, within MIT1002_00874 at 966.878 kb on + strand, within MIT1002_00874 at 966.891 kb on - strand, within MIT1002_00874 at 966.919 kb on - strand, within MIT1002_00874 at 966.945 kb on + strand, within MIT1002_00874 at 967.117 kb on + strand at 967.141 kb on + strand at 967.141 kb on + strand at 967.192 kb on + strand at 967.192 kb on + strand at 967.192 kb on + strand at 967.197 kb on + strand at 967.349 kb on - strand, within MIT1002_00875 at 967.359 kb on - strand, within MIT1002_00875 at 967.430 kb on + strand, within MIT1002_00875 at 967.434 kb on + strand, within MIT1002_00875 at 967.533 kb on - strand, within MIT1002_00875 at 967.561 kb on + strand, within MIT1002_00875 at 967.579 kb on - strand, within MIT1002_00875 at 967.589 kb on + strand, within MIT1002_00875 at 967.604 kb on + strand, within MIT1002_00875 at 967.638 kb on + strand, within MIT1002_00875 at 967.663 kb on - strand, within MIT1002_00875 at 967.791 kb on + strand, within MIT1002_00875 at 967.791 kb on + strand, within MIT1002_00875 at 967.939 kb on + strand, within MIT1002_00875 at 967.978 kb on - strand, within MIT1002_00875 at 967.982 kb on + strand, within MIT1002_00875 at 967.987 kb on + strand, within MIT1002_00875 at 967.995 kb on - strand, within MIT1002_00875 at 967.997 kb on - strand, within MIT1002_00875 at 968.012 kb on + strand, within MIT1002_00875 at 968.069 kb on + strand, within MIT1002_00875 at 968.087 kb on - strand, within MIT1002_00875 at 968.104 kb on + strand, within MIT1002_00875 at 968.128 kb on + strand, within MIT1002_00875
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5 remove 964,070 + -1.5 964,070 + -0.6 964,256 - -0.9 964,322 + -0.6 964,322 + +1.3 964,340 - MIT1002_00873 0.12 +0.1 964,340 - MIT1002_00873 0.12 -0.7 964,437 + MIT1002_00873 0.31 +0.8 964,473 + MIT1002_00873 0.38 -0.6 964,481 - MIT1002_00873 0.40 +0.5 964,487 - MIT1002_00873 0.41 +0.9 964,514 - MIT1002_00873 0.47 +1.2 964,591 - MIT1002_00873 0.62 -0.6 964,614 - MIT1002_00873 0.66 -1.6 964,659 + MIT1002_00873 0.75 -0.2 964,680 + MIT1002_00873 0.79 -0.2 964,686 - MIT1002_00873 0.80 -0.5 964,693 - MIT1002_00873 0.82 +2.1 964,717 + MIT1002_00873 0.87 +1.4 964,717 + MIT1002_00873 0.87 -1.0 964,717 + MIT1002_00873 0.87 -1.9 964,717 + MIT1002_00873 0.87 +0.3 964,725 - MIT1002_00873 0.88 -2.3 964,744 + -3.7 964,757 - -1.6 964,772 - +0.6 964,792 + -0.3 964,844 - +1.7 964,858 - +1.8 964,894 + +0.2 964,910 + +0.2 964,918 + -0.6 964,920 + -1.0 964,920 + +0.5 964,926 - -1.0 964,926 - +0.5 964,926 - -1.2 965,005 - -0.9 965,060 - -2.1 965,126 + -1.8 965,137 + -0.1 965,145 - -2.6 965,145 - -1.4 965,186 - -1.0 965,223 - MIT1002_00874 0.11 -1.1 965,269 - MIT1002_00874 0.13 -1.0 965,332 + MIT1002_00874 0.16 -2.1 965,433 + MIT1002_00874 0.20 +1.1 965,473 + MIT1002_00874 0.22 -0.6 965,481 + MIT1002_00874 0.22 -2.3 965,497 + MIT1002_00874 0.23 -0.4 965,497 + MIT1002_00874 0.23 -1.1 965,497 + MIT1002_00874 0.23 -1.2 965,497 + MIT1002_00874 0.23 +1.6 965,497 + MIT1002_00874 0.23 -2.0 965,530 + MIT1002_00874 0.25 -0.7 965,532 + MIT1002_00874 0.25 -1.4 965,537 + MIT1002_00874 0.25 -1.6 965,540 - MIT1002_00874 0.25 -0.1 965,540 - MIT1002_00874 0.25 -1.3 965,570 + MIT1002_00874 0.26 -1.4 965,570 + MIT1002_00874 0.26 -0.9 965,598 + MIT1002_00874 0.28 -0.6 965,613 + MIT1002_00874 0.28 -1.7 965,613 + MIT1002_00874 0.28 +0.2 965,621 - MIT1002_00874 0.29 -1.9 965,692 - MIT1002_00874 0.32 +1.6 965,764 + MIT1002_00874 0.35 -0.5 965,818 - MIT1002_00874 0.38 +0.6 965,845 + MIT1002_00874 0.39 -0.1 965,890 - MIT1002_00874 0.41 -2.5 965,962 - MIT1002_00874 0.44 -1.2 965,980 - MIT1002_00874 0.45 +1.5 966,105 + MIT1002_00874 0.51 -1.1 966,122 + MIT1002_00874 0.52 -0.9 966,138 + MIT1002_00874 0.53 -0.5 966,155 - MIT1002_00874 0.53 -2.8 966,242 + MIT1002_00874 0.57 -2.6 966,281 - MIT1002_00874 0.59 -0.8 966,281 - MIT1002_00874 0.59 -2.5 966,283 - MIT1002_00874 0.59 -1.2 966,306 - MIT1002_00874 0.60 -2.2 966,550 - MIT1002_00874 0.71 -2.5 966,573 + MIT1002_00874 0.72 +0.3 966,573 + MIT1002_00874 0.72 -0.5 966,578 + MIT1002_00874 0.73 -1.0 966,603 - MIT1002_00874 0.74 -1.1 966,718 + MIT1002_00874 0.79 -0.7 966,718 - MIT1002_00874 0.79 -3.3 966,738 + MIT1002_00874 0.80 -1.2 966,746 - MIT1002_00874 0.80 +0.5 966,842 + MIT1002_00874 0.85 -1.2 966,878 + MIT1002_00874 0.87 -0.6 966,891 - MIT1002_00874 0.87 -1.4 966,919 - MIT1002_00874 0.88 -0.4 966,945 + MIT1002_00874 0.90 +2.5 967,117 + +0.2 967,141 + -1.3 967,141 + -0.9 967,192 + -1.1 967,192 + +0.3 967,192 + +0.3 967,197 + -0.1 967,349 - MIT1002_00875 0.12 -0.5 967,359 - MIT1002_00875 0.12 -0.5 967,430 + MIT1002_00875 0.17 -1.9 967,434 + MIT1002_00875 0.17 -0.5 967,533 - MIT1002_00875 0.24 -0.0 967,561 + MIT1002_00875 0.25 -1.4 967,579 - MIT1002_00875 0.27 -1.0 967,589 + MIT1002_00875 0.27 -1.8 967,604 + MIT1002_00875 0.28 -1.5 967,638 + MIT1002_00875 0.30 -4.2 967,663 - MIT1002_00875 0.32 -1.3 967,791 + MIT1002_00875 0.40 -0.3 967,791 + MIT1002_00875 0.40 -0.9 967,939 + MIT1002_00875 0.50 -2.4 967,978 - MIT1002_00875 0.52 -2.0 967,982 + MIT1002_00875 0.52 -0.2 967,987 + MIT1002_00875 0.53 +1.3 967,995 - MIT1002_00875 0.53 +0.8 967,997 - MIT1002_00875 0.53 +0.5 968,012 + MIT1002_00875 0.54 -0.7 968,069 + MIT1002_00875 0.58 -2.4 968,087 - MIT1002_00875 0.59 -1.4 968,104 + MIT1002_00875 0.60 -1.8 968,128 + MIT1002_00875 0.62 +0.2
Or see this region's nucleotide sequence