Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00864 and MIT1002_00865 are separated by 222 nucleotides MIT1002_00865 and MIT1002_00866 are separated by 195 nucleotides
MIT1002_00864: MIT1002_00864 - Fructose-bisphosphate aldolase class 1, at 950,011 to 950,910
_00864
MIT1002_00865: MIT1002_00865 - hypothetical protein, at 951,133 to 951,447
_00865
MIT1002_00866: MIT1002_00866 - Toluene efflux pump periplasmic linker protein TtgA precursor, at 951,643 to 952,728
_00866
Position (kb) 951
952 Strain fitness (log2 ratio) -2
-1
0
1
2 at 950.905 kb on + strand at 951.075 kb on - strand at 951.077 kb on + strand at 951.085 kb on - strand at 951.085 kb on - strand at 951.149 kb on + strand at 951.286 kb on - strand, within MIT1002_00865 at 951.410 kb on + strand, within MIT1002_00865 at 951.464 kb on - strand at 951.472 kb on - strand at 951.506 kb on - strand at 951.552 kb on + strand at 951.794 kb on + strand, within MIT1002_00866 at 951.806 kb on - strand, within MIT1002_00866 at 951.814 kb on - strand, within MIT1002_00866 at 951.845 kb on + strand, within MIT1002_00866 at 951.878 kb on + strand, within MIT1002_00866 at 951.878 kb on + strand, within MIT1002_00866 at 951.892 kb on + strand, within MIT1002_00866 at 951.931 kb on + strand, within MIT1002_00866 at 951.931 kb on + strand, within MIT1002_00866 at 951.931 kb on + strand, within MIT1002_00866 at 951.939 kb on - strand, within MIT1002_00866 at 951.939 kb on - strand, within MIT1002_00866 at 951.939 kb on - strand, within MIT1002_00866 at 952.065 kb on - strand, within MIT1002_00866 at 952.077 kb on + strand, within MIT1002_00866 at 952.085 kb on - strand, within MIT1002_00866 at 952.149 kb on + strand, within MIT1002_00866 at 952.217 kb on + strand, within MIT1002_00866 at 952.225 kb on - strand, within MIT1002_00866 at 952.241 kb on + strand, within MIT1002_00866 at 952.252 kb on + strand, within MIT1002_00866 at 952.252 kb on + strand, within MIT1002_00866 at 952.252 kb on + strand, within MIT1002_00866 at 952.252 kb on + strand, within MIT1002_00866 at 952.260 kb on - strand, within MIT1002_00866 at 952.260 kb on - strand, within MIT1002_00866 at 952.260 kb on - strand, within MIT1002_00866 at 952.260 kb on - strand, within MIT1002_00866 at 952.260 kb on - strand, within MIT1002_00866 at 952.281 kb on - strand, within MIT1002_00866 at 952.288 kb on - strand, within MIT1002_00866 at 952.289 kb on + strand, within MIT1002_00866 at 952.310 kb on + strand, within MIT1002_00866 at 952.321 kb on + strand, within MIT1002_00866 at 952.329 kb on - strand, within MIT1002_00866 at 952.329 kb on - strand, within MIT1002_00866 at 952.383 kb on - strand, within MIT1002_00866 at 952.403 kb on - strand, within MIT1002_00866 at 952.431 kb on - strand, within MIT1002_00866
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5 remove 950,905 + +0.6 951,075 - +0.1 951,077 + +0.3 951,085 - -0.9 951,085 - -0.5 951,149 + +1.0 951,286 - MIT1002_00865 0.49 -0.4 951,410 + MIT1002_00865 0.88 -1.9 951,464 - +1.5 951,472 - +0.6 951,506 - -0.4 951,552 + +1.0 951,794 + MIT1002_00866 0.14 +0.7 951,806 - MIT1002_00866 0.15 -0.6 951,814 - MIT1002_00866 0.16 -0.1 951,845 + MIT1002_00866 0.19 +2.1 951,878 + MIT1002_00866 0.22 +1.0 951,878 + MIT1002_00866 0.22 -0.4 951,892 + MIT1002_00866 0.23 +0.5 951,931 + MIT1002_00866 0.27 -0.6 951,931 + MIT1002_00866 0.27 +1.1 951,931 + MIT1002_00866 0.27 -0.5 951,939 - MIT1002_00866 0.27 +1.1 951,939 - MIT1002_00866 0.27 +0.9 951,939 - MIT1002_00866 0.27 +0.5 952,065 - MIT1002_00866 0.39 -1.5 952,077 + MIT1002_00866 0.40 +0.2 952,085 - MIT1002_00866 0.41 -0.2 952,149 + MIT1002_00866 0.47 +2.4 952,217 + MIT1002_00866 0.53 +1.0 952,225 - MIT1002_00866 0.54 +0.4 952,241 + MIT1002_00866 0.55 -0.8 952,252 + MIT1002_00866 0.56 +1.3 952,252 + MIT1002_00866 0.56 -1.3 952,252 + MIT1002_00866 0.56 -1.0 952,252 + MIT1002_00866 0.56 -0.8 952,260 - MIT1002_00866 0.57 +0.4 952,260 - MIT1002_00866 0.57 +0.8 952,260 - MIT1002_00866 0.57 +1.3 952,260 - MIT1002_00866 0.57 -0.2 952,260 - MIT1002_00866 0.57 -0.2 952,281 - MIT1002_00866 0.59 -0.8 952,288 - MIT1002_00866 0.59 -0.9 952,289 + MIT1002_00866 0.59 -0.5 952,310 + MIT1002_00866 0.61 -1.7 952,321 + MIT1002_00866 0.62 +1.9 952,329 - MIT1002_00866 0.63 -0.4 952,329 - MIT1002_00866 0.63 +1.3 952,383 - MIT1002_00866 0.68 +0.9 952,403 - MIT1002_00866 0.70 +0.3 952,431 - MIT1002_00866 0.73 +1.1
Or see this region's nucleotide sequence