Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00861

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00860 and MIT1002_00861 are separated by 427 nucleotidesMIT1002_00861 and MIT1002_00862 are separated by 18 nucleotides MIT1002_00860: MIT1002_00860 - S-adenosylmethionine synthase, at 943,824 to 944,969 _00860 MIT1002_00861: MIT1002_00861 - Transketolase 1, at 945,397 to 947,388 _00861 MIT1002_00862: MIT1002_00862 - D-erythrose-4-phosphate dehydrogenase, at 947,407 to 948,417 _00862 Position (kb) 945 946 947 948Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 945.089 kb on + strandat 945.089 kb on + strandat 945.103 kb on + strandat 945.103 kb on + strandat 945.105 kb on - strandat 945.111 kb on - strandat 945.159 kb on + strandat 945.196 kb on + strandat 945.211 kb on - strandat 945.249 kb on + strandat 945.272 kb on + strandat 945.277 kb on + strandat 945.277 kb on + strandat 945.317 kb on + strandat 945.334 kb on + strandat 945.343 kb on + strandat 947.370 kb on - strandat 947.379 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
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945,089 + -0.9
945,089 + +0.2
945,103 + +1.7
945,103 + +0.8
945,105 - -0.1
945,111 - +0.3
945,159 + +0.6
945,196 + -0.4
945,211 - +1.8
945,249 + -0.3
945,272 + -2.1
945,277 + -0.2
945,277 + -3.1
945,317 + -0.2
945,334 + +0.8
945,343 + -0.8
947,370 - -0.2
947,379 + -1.4

Or see this region's nucleotide sequence