Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00803 and MIT1002_00804 overlap by 4 nucleotides MIT1002_00804 and MIT1002_00805 overlap by 11 nucleotides MIT1002_00805 and MIT1002_00806 are separated by 90 nucleotides
MIT1002_00803: MIT1002_00803 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 889,887 to 891,698
_00803
MIT1002_00804: MIT1002_00804 - SNARE associated Golgi protein, at 891,695 to 892,372
_00804
MIT1002_00805: MIT1002_00805 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 892,362 to 893,099
_00805
MIT1002_00806: MIT1002_00806 - hypothetical protein, at 893,190 to 893,891
_00806
Position (kb) 891
892
893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 890.697 kb on - strand, within MIT1002_00803 at 890.697 kb on - strand, within MIT1002_00803 at 890.726 kb on - strand, within MIT1002_00803 at 890.730 kb on + strand, within MIT1002_00803 at 890.738 kb on - strand, within MIT1002_00803 at 890.738 kb on - strand, within MIT1002_00803 at 890.776 kb on - strand, within MIT1002_00803 at 890.819 kb on - strand, within MIT1002_00803 at 890.906 kb on + strand, within MIT1002_00803 at 890.906 kb on + strand, within MIT1002_00803 at 890.907 kb on - strand, within MIT1002_00803 at 890.919 kb on - strand, within MIT1002_00803 at 890.992 kb on + strand, within MIT1002_00803 at 891.066 kb on - strand, within MIT1002_00803 at 891.180 kb on - strand, within MIT1002_00803 at 891.181 kb on + strand, within MIT1002_00803 at 891.204 kb on + strand, within MIT1002_00803 at 891.316 kb on - strand, within MIT1002_00803 at 891.323 kb on - strand, within MIT1002_00803 at 891.335 kb on - strand, within MIT1002_00803 at 891.382 kb on - strand, within MIT1002_00803 at 891.406 kb on + strand, within MIT1002_00803 at 891.424 kb on + strand, within MIT1002_00803 at 891.424 kb on + strand, within MIT1002_00803 at 891.446 kb on + strand, within MIT1002_00803 at 891.454 kb on - strand, within MIT1002_00803 at 891.489 kb on + strand, within MIT1002_00803 at 891.493 kb on + strand, within MIT1002_00803 at 891.548 kb on + strand at 891.548 kb on + strand at 891.617 kb on + strand at 891.641 kb on - strand at 891.659 kb on + strand at 891.659 kb on + strand at 891.659 kb on + strand at 891.659 kb on + strand at 891.659 kb on + strand at 891.665 kb on + strand at 891.667 kb on - strand at 891.667 kb on - strand at 891.686 kb on + strand at 891.692 kb on + strand at 891.702 kb on + strand at 891.740 kb on - strand at 891.756 kb on - strand at 891.781 kb on + strand, within MIT1002_00804 at 891.781 kb on + strand, within MIT1002_00804 at 891.887 kb on + strand, within MIT1002_00804 at 891.928 kb on - strand, within MIT1002_00804 at 892.021 kb on + strand, within MIT1002_00804 at 892.029 kb on - strand, within MIT1002_00804 at 892.066 kb on - strand, within MIT1002_00804 at 892.094 kb on + strand, within MIT1002_00804 at 892.162 kb on - strand, within MIT1002_00804 at 892.200 kb on - strand, within MIT1002_00804 at 892.200 kb on - strand, within MIT1002_00804 at 892.200 kb on - strand, within MIT1002_00804 at 892.200 kb on - strand, within MIT1002_00804 at 892.291 kb on + strand, within MIT1002_00804 at 892.291 kb on + strand, within MIT1002_00804 at 892.299 kb on - strand, within MIT1002_00804 at 892.299 kb on - strand, within MIT1002_00804 at 892.469 kb on - strand, within MIT1002_00805 at 892.469 kb on - strand, within MIT1002_00805 at 892.532 kb on + strand, within MIT1002_00805 at 892.539 kb on - strand, within MIT1002_00805 at 892.539 kb on - strand, within MIT1002_00805 at 892.539 kb on - strand, within MIT1002_00805 at 892.634 kb on + strand, within MIT1002_00805 at 892.634 kb on + strand, within MIT1002_00805 at 892.655 kb on - strand, within MIT1002_00805 at 892.736 kb on - strand, within MIT1002_00805 at 892.741 kb on - strand, within MIT1002_00805 at 892.753 kb on + strand, within MIT1002_00805 at 892.753 kb on + strand, within MIT1002_00805 at 892.753 kb on + strand, within MIT1002_00805 at 892.753 kb on + strand, within MIT1002_00805 at 892.761 kb on + strand, within MIT1002_00805 at 892.761 kb on - strand, within MIT1002_00805 at 892.761 kb on - strand, within MIT1002_00805 at 892.761 kb on - strand, within MIT1002_00805 at 892.761 kb on - strand, within MIT1002_00805 at 892.769 kb on - strand, within MIT1002_00805 at 892.817 kb on + strand, within MIT1002_00805 at 892.875 kb on + strand, within MIT1002_00805 at 892.875 kb on + strand, within MIT1002_00805 at 892.907 kb on + strand, within MIT1002_00805 at 892.966 kb on + strand, within MIT1002_00805 at 893.038 kb on + strand at 893.054 kb on - strand at 893.133 kb on - strand at 893.166 kb on - strand at 893.211 kb on + strand at 893.307 kb on + strand, within MIT1002_00806 at 893.318 kb on + strand, within MIT1002_00806 at 893.352 kb on - strand, within MIT1002_00806
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5 remove 890,697 - MIT1002_00803 0.45 -1.5 890,697 - MIT1002_00803 0.45 -0.2 890,726 - MIT1002_00803 0.46 -0.1 890,730 + MIT1002_00803 0.47 -1.1 890,738 - MIT1002_00803 0.47 +1.8 890,738 - MIT1002_00803 0.47 +0.7 890,776 - MIT1002_00803 0.49 +1.7 890,819 - MIT1002_00803 0.51 -1.4 890,906 + MIT1002_00803 0.56 +1.1 890,906 + MIT1002_00803 0.56 +1.5 890,907 - MIT1002_00803 0.56 +0.0 890,919 - MIT1002_00803 0.57 -1.0 890,992 + MIT1002_00803 0.61 +0.8 891,066 - MIT1002_00803 0.65 -0.6 891,180 - MIT1002_00803 0.71 -0.0 891,181 + MIT1002_00803 0.71 -1.1 891,204 + MIT1002_00803 0.73 -0.2 891,316 - MIT1002_00803 0.79 +0.9 891,323 - MIT1002_00803 0.79 -0.7 891,335 - MIT1002_00803 0.80 -0.2 891,382 - MIT1002_00803 0.83 +0.5 891,406 + MIT1002_00803 0.84 -0.6 891,424 + MIT1002_00803 0.85 +0.6 891,424 + MIT1002_00803 0.85 +0.2 891,446 + MIT1002_00803 0.86 +0.7 891,454 - MIT1002_00803 0.86 -0.7 891,489 + MIT1002_00803 0.88 +1.0 891,493 + MIT1002_00803 0.89 +2.3 891,548 + -0.7 891,548 + -0.5 891,617 + -0.3 891,641 - -0.1 891,659 + +0.0 891,659 + -2.1 891,659 + +1.6 891,659 + -0.2 891,659 + -0.6 891,665 + +1.7 891,667 - +1.7 891,667 - +0.2 891,686 + +1.8 891,692 + -0.2 891,702 + -0.2 891,740 - -1.2 891,756 - +0.0 891,781 + MIT1002_00804 0.13 +1.1 891,781 + MIT1002_00804 0.13 -1.5 891,887 + MIT1002_00804 0.28 -0.2 891,928 - MIT1002_00804 0.34 +0.1 892,021 + MIT1002_00804 0.48 +1.5 892,029 - MIT1002_00804 0.49 -0.7 892,066 - MIT1002_00804 0.55 +0.3 892,094 + MIT1002_00804 0.59 +0.2 892,162 - MIT1002_00804 0.69 +0.1 892,200 - MIT1002_00804 0.74 +1.7 892,200 - MIT1002_00804 0.74 +0.1 892,200 - MIT1002_00804 0.74 +0.8 892,200 - MIT1002_00804 0.74 -0.1 892,291 + MIT1002_00804 0.88 +1.3 892,291 + MIT1002_00804 0.88 +0.3 892,299 - MIT1002_00804 0.89 +0.2 892,299 - MIT1002_00804 0.89 -1.6 892,469 - MIT1002_00805 0.14 +0.8 892,469 - MIT1002_00805 0.14 +0.9 892,532 + MIT1002_00805 0.23 +0.5 892,539 - MIT1002_00805 0.24 -2.1 892,539 - MIT1002_00805 0.24 -0.7 892,539 - MIT1002_00805 0.24 +0.4 892,634 + MIT1002_00805 0.37 -2.9 892,634 + MIT1002_00805 0.37 -0.2 892,655 - MIT1002_00805 0.40 +0.7 892,736 - MIT1002_00805 0.51 -0.5 892,741 - MIT1002_00805 0.51 -0.8 892,753 + MIT1002_00805 0.53 +0.5 892,753 + MIT1002_00805 0.53 +0.4 892,753 + MIT1002_00805 0.53 -0.4 892,753 + MIT1002_00805 0.53 -0.7 892,761 + MIT1002_00805 0.54 -0.1 892,761 - MIT1002_00805 0.54 -1.9 892,761 - MIT1002_00805 0.54 -1.2 892,761 - MIT1002_00805 0.54 -1.4 892,761 - MIT1002_00805 0.54 -0.2 892,769 - MIT1002_00805 0.55 -0.5 892,817 + MIT1002_00805 0.62 -1.0 892,875 + MIT1002_00805 0.70 -0.1 892,875 + MIT1002_00805 0.70 -0.8 892,907 + MIT1002_00805 0.74 -0.0 892,966 + MIT1002_00805 0.82 +0.8 893,038 + -0.2 893,054 - +1.4 893,133 - -0.2 893,166 - -0.3 893,211 + -1.5 893,307 + MIT1002_00806 0.17 +1.5 893,318 + MIT1002_00806 0.18 -2.2 893,352 - MIT1002_00806 0.23 +2.0
Or see this region's nucleotide sequence