Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00801

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00799 and MIT1002_00800 are separated by 65 nucleotidesMIT1002_00800 and MIT1002_00801 are separated by 3 nucleotidesMIT1002_00801 and MIT1002_00802 overlap by 11 nucleotidesMIT1002_00802 and MIT1002_00803 are separated by 116 nucleotides MIT1002_00799: MIT1002_00799 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 885,943 to 886,788 _00799 MIT1002_00800: MIT1002_00800 - Heme oxygenase, at 886,854 to 887,525 _00800 MIT1002_00801: MIT1002_00801 - Long-chain-fatty-acid--CoA ligase FadD15, at 887,529 to 889,037 _00801 MIT1002_00802: MIT1002_00802 - Thermostable hemolysin, at 889,027 to 889,770 _00802 MIT1002_00803: MIT1002_00803 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 889,887 to 891,698 _00803 Position (kb) 887 888 889 890Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 886.561 kb on - strand, within MIT1002_00799at 886.563 kb on + strand, within MIT1002_00799at 886.622 kb on + strand, within MIT1002_00799at 886.632 kb on + strand, within MIT1002_00799at 886.725 kb on - strandat 886.758 kb on + strandat 886.776 kb on + strandat 886.853 kb on - strandat 886.865 kb on + strandat 886.883 kb on + strandat 886.883 kb on - strandat 886.906 kb on + strandat 886.906 kb on - strandat 887.010 kb on + strand, within MIT1002_00800at 887.018 kb on - strand, within MIT1002_00800at 887.020 kb on + strand, within MIT1002_00800at 887.055 kb on - strand, within MIT1002_00800at 887.099 kb on + strand, within MIT1002_00800at 887.107 kb on - strand, within MIT1002_00800at 887.121 kb on + strand, within MIT1002_00800at 887.194 kb on - strand, within MIT1002_00800at 887.358 kb on - strand, within MIT1002_00800at 887.402 kb on + strand, within MIT1002_00800at 887.453 kb on + strand, within MIT1002_00800at 887.480 kb on - strandat 887.489 kb on + strandat 887.499 kb on + strandat 887.507 kb on - strandat 887.507 kb on - strandat 887.578 kb on + strandat 887.580 kb on + strandat 887.586 kb on - strandat 887.588 kb on - strandat 887.612 kb on + strandat 887.613 kb on + strandat 887.621 kb on - strandat 887.621 kb on - strandat 887.676 kb on + strandat 887.737 kb on + strand, within MIT1002_00801at 887.756 kb on + strand, within MIT1002_00801at 887.803 kb on + strand, within MIT1002_00801at 887.819 kb on - strand, within MIT1002_00801at 887.821 kb on + strand, within MIT1002_00801at 887.821 kb on - strand, within MIT1002_00801at 887.821 kb on - strand, within MIT1002_00801at 887.824 kb on - strand, within MIT1002_00801at 887.864 kb on + strand, within MIT1002_00801at 887.869 kb on + strand, within MIT1002_00801at 887.872 kb on - strand, within MIT1002_00801at 887.892 kb on - strand, within MIT1002_00801at 887.897 kb on - strand, within MIT1002_00801at 887.935 kb on - strand, within MIT1002_00801at 887.954 kb on + strand, within MIT1002_00801at 887.959 kb on + strand, within MIT1002_00801at 887.992 kb on + strand, within MIT1002_00801at 888.000 kb on - strand, within MIT1002_00801at 888.008 kb on + strand, within MIT1002_00801at 888.141 kb on + strand, within MIT1002_00801at 888.163 kb on + strand, within MIT1002_00801at 888.174 kb on + strand, within MIT1002_00801at 888.174 kb on + strand, within MIT1002_00801at 888.182 kb on - strand, within MIT1002_00801at 888.191 kb on - strand, within MIT1002_00801at 888.261 kb on - strand, within MIT1002_00801at 888.266 kb on - strand, within MIT1002_00801at 888.275 kb on + strand, within MIT1002_00801at 888.447 kb on + strand, within MIT1002_00801at 888.450 kb on + strand, within MIT1002_00801at 888.450 kb on + strand, within MIT1002_00801at 888.450 kb on + strand, within MIT1002_00801at 888.450 kb on + strand, within MIT1002_00801at 888.455 kb on - strand, within MIT1002_00801at 888.458 kb on - strand, within MIT1002_00801at 888.458 kb on - strand, within MIT1002_00801at 888.458 kb on - strand, within MIT1002_00801at 888.458 kb on - strand, within MIT1002_00801at 888.458 kb on - strand, within MIT1002_00801at 888.467 kb on - strand, within MIT1002_00801at 888.487 kb on + strand, within MIT1002_00801at 888.500 kb on + strand, within MIT1002_00801at 888.536 kb on - strand, within MIT1002_00801at 888.545 kb on + strand, within MIT1002_00801at 888.592 kb on - strand, within MIT1002_00801at 888.593 kb on - strand, within MIT1002_00801at 888.639 kb on + strand, within MIT1002_00801at 888.641 kb on + strand, within MIT1002_00801at 888.646 kb on + strand, within MIT1002_00801at 888.649 kb on - strand, within MIT1002_00801at 888.653 kb on + strand, within MIT1002_00801at 888.656 kb on + strand, within MIT1002_00801at 888.661 kb on - strand, within MIT1002_00801at 888.734 kb on - strand, within MIT1002_00801at 888.737 kb on + strand, within MIT1002_00801at 888.832 kb on + strand, within MIT1002_00801at 888.950 kb on - strandat 889.015 kb on + strandat 889.101 kb on - strandat 889.128 kb on + strand, within MIT1002_00802at 889.136 kb on - strand, within MIT1002_00802at 889.136 kb on - strand, within MIT1002_00802at 889.136 kb on - strand, within MIT1002_00802at 889.138 kb on + strand, within MIT1002_00802at 889.147 kb on + strand, within MIT1002_00802at 889.147 kb on + strand, within MIT1002_00802at 889.147 kb on + strand, within MIT1002_00802at 889.175 kb on + strand, within MIT1002_00802at 889.180 kb on + strand, within MIT1002_00802at 889.180 kb on + strand, within MIT1002_00802at 889.181 kb on - strand, within MIT1002_00802at 889.183 kb on - strand, within MIT1002_00802at 889.183 kb on - strand, within MIT1002_00802at 889.190 kb on - strand, within MIT1002_00802at 889.195 kb on + strand, within MIT1002_00802at 889.247 kb on + strand, within MIT1002_00802at 889.254 kb on - strand, within MIT1002_00802at 889.258 kb on + strand, within MIT1002_00802at 889.372 kb on + strand, within MIT1002_00802at 889.379 kb on + strand, within MIT1002_00802at 889.379 kb on + strand, within MIT1002_00802at 889.382 kb on - strand, within MIT1002_00802at 889.396 kb on + strand, within MIT1002_00802at 889.432 kb on + strand, within MIT1002_00802at 889.453 kb on + strand, within MIT1002_00802at 889.454 kb on - strand, within MIT1002_00802at 889.475 kb on + strand, within MIT1002_00802at 889.483 kb on - strand, within MIT1002_00802at 889.502 kb on + strand, within MIT1002_00802at 889.564 kb on + strand, within MIT1002_00802at 889.584 kb on - strand, within MIT1002_00802at 889.617 kb on + strand, within MIT1002_00802at 889.696 kb on - strandat 889.741 kb on + strandat 889.809 kb on + strandat 889.824 kb on - strandat 889.901 kb on + strandat 889.942 kb on + strandat 889.991 kb on + strandat 889.991 kb on + strandat 889.991 kb on + strandat 889.999 kb on - strandat 889.999 kb on - strandat 889.999 kb on - strandat 889.999 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
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886,561 - MIT1002_00799 0.73 -0.5
886,563 + MIT1002_00799 0.73 -2.9
886,622 + MIT1002_00799 0.80 +1.1
886,632 + MIT1002_00799 0.81 -0.2
886,725 - -0.2
886,758 + -1.6
886,776 + -1.9
886,853 - +0.1
886,865 + +1.0
886,883 + +0.9
886,883 - +0.1
886,906 + +1.5
886,906 - +1.2
887,010 + MIT1002_00800 0.23 +0.6
887,018 - MIT1002_00800 0.24 -0.4
887,020 + MIT1002_00800 0.25 -1.9
887,055 - MIT1002_00800 0.30 +0.1
887,099 + MIT1002_00800 0.36 +0.4
887,107 - MIT1002_00800 0.38 +0.3
887,121 + MIT1002_00800 0.40 -0.3
887,194 - MIT1002_00800 0.51 +0.4
887,358 - MIT1002_00800 0.75 +2.1
887,402 + MIT1002_00800 0.82 +0.5
887,453 + MIT1002_00800 0.89 +1.1
887,480 - -0.2
887,489 + +0.1
887,499 + +1.1
887,507 - +1.0
887,507 - -0.2
887,578 + +1.8
887,580 + -0.9
887,586 - -0.5
887,588 - -0.5
887,612 + +1.1
887,613 + +2.0
887,621 - +0.3
887,621 - -0.9
887,676 + +0.7
887,737 + MIT1002_00801 0.14 -1.5
887,756 + MIT1002_00801 0.15 -1.0
887,803 + MIT1002_00801 0.18 -0.3
887,819 - MIT1002_00801 0.19 -0.4
887,821 + MIT1002_00801 0.19 -0.4
887,821 - MIT1002_00801 0.19 +1.0
887,821 - MIT1002_00801 0.19 +0.5
887,824 - MIT1002_00801 0.20 +0.1
887,864 + MIT1002_00801 0.22 +0.2
887,869 + MIT1002_00801 0.23 +0.2
887,872 - MIT1002_00801 0.23 +0.1
887,892 - MIT1002_00801 0.24 +1.8
887,897 - MIT1002_00801 0.24 +1.2
887,935 - MIT1002_00801 0.27 +0.1
887,954 + MIT1002_00801 0.28 +0.5
887,959 + MIT1002_00801 0.28 -1.9
887,992 + MIT1002_00801 0.31 -0.4
888,000 - MIT1002_00801 0.31 -0.0
888,008 + MIT1002_00801 0.32 +2.7
888,141 + MIT1002_00801 0.41 +0.4
888,163 + MIT1002_00801 0.42 +0.8
888,174 + MIT1002_00801 0.43 +3.1
888,174 + MIT1002_00801 0.43 +0.8
888,182 - MIT1002_00801 0.43 +0.9
888,191 - MIT1002_00801 0.44 +0.5
888,261 - MIT1002_00801 0.49 +1.9
888,266 - MIT1002_00801 0.49 +1.5
888,275 + MIT1002_00801 0.49 -0.8
888,447 + MIT1002_00801 0.61 -0.3
888,450 + MIT1002_00801 0.61 +1.9
888,450 + MIT1002_00801 0.61 +0.9
888,450 + MIT1002_00801 0.61 +0.7
888,450 + MIT1002_00801 0.61 +0.5
888,455 - MIT1002_00801 0.61 +0.6
888,458 - MIT1002_00801 0.62 +0.7
888,458 - MIT1002_00801 0.62 -0.3
888,458 - MIT1002_00801 0.62 -0.8
888,458 - MIT1002_00801 0.62 +0.5
888,458 - MIT1002_00801 0.62 -1.0
888,467 - MIT1002_00801 0.62 -0.3
888,487 + MIT1002_00801 0.63 +1.0
888,500 + MIT1002_00801 0.64 -3.0
888,536 - MIT1002_00801 0.67 -0.0
888,545 + MIT1002_00801 0.67 +0.1
888,592 - MIT1002_00801 0.70 -2.9
888,593 - MIT1002_00801 0.71 -0.3
888,639 + MIT1002_00801 0.74 -3.2
888,641 + MIT1002_00801 0.74 +0.8
888,646 + MIT1002_00801 0.74 +0.1
888,649 - MIT1002_00801 0.74 +1.1
888,653 + MIT1002_00801 0.74 +0.2
888,656 + MIT1002_00801 0.75 -0.4
888,661 - MIT1002_00801 0.75 -1.7
888,734 - MIT1002_00801 0.80 -1.8
888,737 + MIT1002_00801 0.80 -1.9
888,832 + MIT1002_00801 0.86 +0.0
888,950 - +0.1
889,015 + +0.7
889,101 - +0.1
889,128 + MIT1002_00802 0.14 +0.6
889,136 - MIT1002_00802 0.15 +0.3
889,136 - MIT1002_00802 0.15 -0.7
889,136 - MIT1002_00802 0.15 -0.5
889,138 + MIT1002_00802 0.15 -0.8
889,147 + MIT1002_00802 0.16 +1.5
889,147 + MIT1002_00802 0.16 -0.4
889,147 + MIT1002_00802 0.16 +1.1
889,175 + MIT1002_00802 0.20 -0.8
889,180 + MIT1002_00802 0.21 +0.1
889,180 + MIT1002_00802 0.21 -2.2
889,181 - MIT1002_00802 0.21 +0.3
889,183 - MIT1002_00802 0.21 +0.2
889,183 - MIT1002_00802 0.21 +0.1
889,190 - MIT1002_00802 0.22 -0.8
889,195 + MIT1002_00802 0.23 -0.8
889,247 + MIT1002_00802 0.30 -0.2
889,254 - MIT1002_00802 0.31 -1.0
889,258 + MIT1002_00802 0.31 -0.2
889,372 + MIT1002_00802 0.46 +1.9
889,379 + MIT1002_00802 0.47 +1.5
889,379 + MIT1002_00802 0.47 -0.2
889,382 - MIT1002_00802 0.48 -1.5
889,396 + MIT1002_00802 0.50 -1.7
889,432 + MIT1002_00802 0.54 +1.0
889,453 + MIT1002_00802 0.57 -0.1
889,454 - MIT1002_00802 0.57 +0.1
889,475 + MIT1002_00802 0.60 +0.8
889,483 - MIT1002_00802 0.61 -2.4
889,502 + MIT1002_00802 0.64 -1.6
889,564 + MIT1002_00802 0.72 +0.6
889,584 - MIT1002_00802 0.75 -0.6
889,617 + MIT1002_00802 0.79 -0.2
889,696 - -1.2
889,741 + +0.8
889,809 + -0.2
889,824 - -1.5
889,901 + -0.0
889,942 + +1.5
889,991 + -2.2
889,991 + +0.3
889,991 + +0.6
889,999 - +0.0
889,999 - -1.5
889,999 - +1.1
889,999 - +0.6

Or see this region's nucleotide sequence