Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00723 and MIT1002_00724 are separated by 86 nucleotides MIT1002_00724 and MIT1002_00725 are separated by 70 nucleotides
MIT1002_00723: MIT1002_00723 - Cyclopentanol dehydrogenase, at 791,500 to 792,291
_00723
MIT1002_00724: MIT1002_00724 - putative metal-dependent hydrolase of the TIM-barrel fold protein, at 792,378 to 793,253
_00724
MIT1002_00725: MIT1002_00725 - D-galactonate dehydratase, at 793,324 to 794,508
_00725
Position (kb) 792
793
794 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 791.443 kb on - strand at 791.449 kb on + strand at 791.462 kb on + strand at 791.594 kb on + strand, within MIT1002_00723 at 791.627 kb on - strand, within MIT1002_00723 at 791.635 kb on - strand, within MIT1002_00723 at 791.670 kb on - strand, within MIT1002_00723 at 791.772 kb on + strand, within MIT1002_00723 at 791.786 kb on + strand, within MIT1002_00723 at 791.804 kb on + strand, within MIT1002_00723 at 791.804 kb on + strand, within MIT1002_00723 at 791.804 kb on + strand, within MIT1002_00723 at 791.814 kb on - strand, within MIT1002_00723 at 791.847 kb on - strand, within MIT1002_00723 at 791.910 kb on - strand, within MIT1002_00723 at 791.915 kb on - strand, within MIT1002_00723 at 791.931 kb on + strand, within MIT1002_00723 at 791.933 kb on + strand, within MIT1002_00723 at 791.933 kb on + strand, within MIT1002_00723 at 791.933 kb on + strand, within MIT1002_00723 at 791.933 kb on + strand, within MIT1002_00723 at 791.938 kb on + strand, within MIT1002_00723 at 791.941 kb on - strand, within MIT1002_00723 at 791.941 kb on - strand, within MIT1002_00723 at 791.941 kb on - strand, within MIT1002_00723 at 792.026 kb on + strand, within MIT1002_00723 at 792.042 kb on - strand, within MIT1002_00723 at 792.072 kb on + strand, within MIT1002_00723 at 792.080 kb on - strand, within MIT1002_00723 at 792.120 kb on + strand, within MIT1002_00723 at 792.210 kb on + strand, within MIT1002_00723 at 792.273 kb on + strand at 792.273 kb on + strand at 792.281 kb on - strand at 792.281 kb on - strand at 792.281 kb on - strand at 792.281 kb on - strand at 792.281 kb on - strand at 792.297 kb on + strand at 792.298 kb on - strand at 792.308 kb on - strand at 792.349 kb on - strand at 792.364 kb on - strand at 792.387 kb on + strand at 792.451 kb on + strand at 792.452 kb on + strand at 792.460 kb on - strand at 792.503 kb on + strand, within MIT1002_00724 at 792.563 kb on + strand, within MIT1002_00724 at 792.592 kb on - strand, within MIT1002_00724 at 792.630 kb on + strand, within MIT1002_00724 at 792.709 kb on + strand, within MIT1002_00724 at 792.710 kb on + strand, within MIT1002_00724 at 792.718 kb on - strand, within MIT1002_00724 at 792.766 kb on + strand, within MIT1002_00724 at 792.766 kb on + strand, within MIT1002_00724 at 792.774 kb on - strand, within MIT1002_00724 at 792.796 kb on - strand, within MIT1002_00724 at 792.850 kb on - strand, within MIT1002_00724 at 792.863 kb on + strand, within MIT1002_00724 at 792.879 kb on - strand, within MIT1002_00724 at 793.095 kb on + strand, within MIT1002_00724 at 793.095 kb on + strand, within MIT1002_00724 at 793.173 kb on - strand at 793.287 kb on + strand at 793.300 kb on + strand at 793.308 kb on - strand at 793.452 kb on + strand, within MIT1002_00725 at 793.453 kb on - strand, within MIT1002_00725 at 793.459 kb on + strand, within MIT1002_00725 at 793.467 kb on - strand, within MIT1002_00725 at 793.512 kb on - strand, within MIT1002_00725 at 793.525 kb on + strand, within MIT1002_00725 at 793.564 kb on - strand, within MIT1002_00725 at 793.581 kb on - strand, within MIT1002_00725 at 793.608 kb on - strand, within MIT1002_00725 at 793.657 kb on - strand, within MIT1002_00725 at 793.695 kb on - strand, within MIT1002_00725 at 793.712 kb on - strand, within MIT1002_00725 at 793.720 kb on - strand, within MIT1002_00725 at 793.756 kb on + strand, within MIT1002_00725 at 793.759 kb on - strand, within MIT1002_00725 at 793.801 kb on - strand, within MIT1002_00725 at 793.831 kb on + strand, within MIT1002_00725 at 793.836 kb on + strand, within MIT1002_00725 at 793.855 kb on - strand, within MIT1002_00725 at 793.935 kb on + strand, within MIT1002_00725 at 793.935 kb on + strand, within MIT1002_00725 at 793.943 kb on - strand, within MIT1002_00725 at 793.943 kb on - strand, within MIT1002_00725 at 793.959 kb on + strand, within MIT1002_00725 at 794.012 kb on + strand, within MIT1002_00725 at 794.012 kb on + strand, within MIT1002_00725 at 794.126 kb on - strand, within MIT1002_00725 at 794.179 kb on + strand, within MIT1002_00725 at 794.199 kb on - strand, within MIT1002_00725 at 794.200 kb on + strand, within MIT1002_00725
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5 remove 791,443 - -0.5 791,449 + +1.5 791,462 + +0.2 791,594 + MIT1002_00723 0.12 -1.3 791,627 - MIT1002_00723 0.16 -2.4 791,635 - MIT1002_00723 0.17 +0.1 791,670 - MIT1002_00723 0.21 +0.4 791,772 + MIT1002_00723 0.34 -0.2 791,786 + MIT1002_00723 0.36 +1.1 791,804 + MIT1002_00723 0.38 +2.7 791,804 + MIT1002_00723 0.38 -1.7 791,804 + MIT1002_00723 0.38 +1.1 791,814 - MIT1002_00723 0.40 -2.3 791,847 - MIT1002_00723 0.44 +1.1 791,910 - MIT1002_00723 0.52 -0.6 791,915 - MIT1002_00723 0.52 -0.6 791,931 + MIT1002_00723 0.54 -2.7 791,933 + MIT1002_00723 0.55 +0.5 791,933 + MIT1002_00723 0.55 +0.6 791,933 + MIT1002_00723 0.55 -0.7 791,933 + MIT1002_00723 0.55 -0.2 791,938 + MIT1002_00723 0.55 -0.0 791,941 - MIT1002_00723 0.56 +0.5 791,941 - MIT1002_00723 0.56 +0.3 791,941 - MIT1002_00723 0.56 -0.5 792,026 + MIT1002_00723 0.66 -1.0 792,042 - MIT1002_00723 0.68 +1.2 792,072 + MIT1002_00723 0.72 +0.5 792,080 - MIT1002_00723 0.73 +0.0 792,120 + MIT1002_00723 0.78 +0.6 792,210 + MIT1002_00723 0.90 +5.0 792,273 + -0.6 792,273 + +0.9 792,281 - -0.1 792,281 - -1.1 792,281 - +0.0 792,281 - -0.4 792,281 - -1.4 792,297 + -1.0 792,298 - +0.1 792,308 - -2.0 792,349 - +0.9 792,364 - +1.3 792,387 + -0.4 792,451 + +1.8 792,452 + -0.3 792,460 - +0.3 792,503 + MIT1002_00724 0.14 +1.8 792,563 + MIT1002_00724 0.21 -0.9 792,592 - MIT1002_00724 0.24 +1.1 792,630 + MIT1002_00724 0.29 +0.9 792,709 + MIT1002_00724 0.38 +1.3 792,710 + MIT1002_00724 0.38 +0.1 792,718 - MIT1002_00724 0.39 +0.4 792,766 + MIT1002_00724 0.44 +1.4 792,766 + MIT1002_00724 0.44 -1.1 792,774 - MIT1002_00724 0.45 +0.7 792,796 - MIT1002_00724 0.48 -0.2 792,850 - MIT1002_00724 0.54 -1.6 792,863 + MIT1002_00724 0.55 -0.5 792,879 - MIT1002_00724 0.57 +0.1 793,095 + MIT1002_00724 0.82 +0.6 793,095 + MIT1002_00724 0.82 +0.8 793,173 - -2.2 793,287 + +0.6 793,300 + -0.4 793,308 - -1.0 793,452 + MIT1002_00725 0.11 -0.5 793,453 - MIT1002_00725 0.11 -0.1 793,459 + MIT1002_00725 0.11 +1.5 793,467 - MIT1002_00725 0.12 -0.1 793,512 - MIT1002_00725 0.16 +0.5 793,525 + MIT1002_00725 0.17 -1.8 793,564 - MIT1002_00725 0.20 +0.7 793,581 - MIT1002_00725 0.22 -1.5 793,608 - MIT1002_00725 0.24 +2.7 793,657 - MIT1002_00725 0.28 -2.4 793,695 - MIT1002_00725 0.31 +0.2 793,712 - MIT1002_00725 0.33 -1.3 793,720 - MIT1002_00725 0.33 +0.6 793,756 + MIT1002_00725 0.36 -0.8 793,759 - MIT1002_00725 0.37 +1.3 793,801 - MIT1002_00725 0.40 +1.9 793,831 + MIT1002_00725 0.43 +1.6 793,836 + MIT1002_00725 0.43 -1.0 793,855 - MIT1002_00725 0.45 +1.3 793,935 + MIT1002_00725 0.52 -2.2 793,935 + MIT1002_00725 0.52 -0.9 793,943 - MIT1002_00725 0.52 +0.3 793,943 - MIT1002_00725 0.52 -0.4 793,959 + MIT1002_00725 0.54 +0.8 794,012 + MIT1002_00725 0.58 +0.4 794,012 + MIT1002_00725 0.58 -0.4 794,126 - MIT1002_00725 0.68 -2.3 794,179 + MIT1002_00725 0.72 +0.9 794,199 - MIT1002_00725 0.74 +0.8 794,200 + MIT1002_00725 0.74 +0.6
Or see this region's nucleotide sequence