Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00703 and MIT1002_00704 overlap by 62 nucleotides MIT1002_00704 and MIT1002_00705 are separated by 33 nucleotides MIT1002_00705 and MIT1002_00706 are separated by 4 nucleotides
MIT1002_00703: MIT1002_00703 - hypothetical protein, at 770,965 to 771,612
_00703
MIT1002_00704: MIT1002_00704 - hypothetical protein, at 771,551 to 771,889
_00704
MIT1002_00705: MIT1002_00705 - Trifunctional nucleotide phosphoesterase protein YfkN precursor, at 771,923 to 772,483
_00705
MIT1002_00706: MIT1002_00706 - Bacteriophytochrome cph2, at 772,488 to 774,086
_00706
Position (kb) 771
772
773 Strain fitness (log2 ratio) -2
-1
0
1
2 at 771.022 kb on + strand at 771.029 kb on - strand at 771.029 kb on - strand at 771.060 kb on - strand, within MIT1002_00703 at 771.079 kb on - strand, within MIT1002_00703 at 771.112 kb on + strand, within MIT1002_00703 at 771.141 kb on - strand, within MIT1002_00703 at 771.219 kb on + strand, within MIT1002_00703 at 771.222 kb on - strand, within MIT1002_00703 at 771.227 kb on - strand, within MIT1002_00703 at 771.264 kb on + strand, within MIT1002_00703 at 771.376 kb on - strand, within MIT1002_00703 at 771.583 kb on + strand at 771.583 kb on + strand at 771.588 kb on + strand at 771.596 kb on - strand at 771.596 kb on - strand at 771.670 kb on - strand, within MIT1002_00704 at 771.681 kb on - strand, within MIT1002_00704 at 771.708 kb on + strand, within MIT1002_00704 at 771.732 kb on - strand, within MIT1002_00704 at 771.803 kb on + strand, within MIT1002_00704 at 771.844 kb on + strand, within MIT1002_00704 at 771.844 kb on + strand, within MIT1002_00704 at 771.928 kb on - strand at 771.937 kb on + strand at 771.974 kb on - strand at 772.022 kb on - strand, within MIT1002_00705 at 772.116 kb on - strand, within MIT1002_00705 at 772.137 kb on - strand, within MIT1002_00705 at 772.195 kb on + strand, within MIT1002_00705 at 772.209 kb on - strand, within MIT1002_00705 at 772.209 kb on - strand, within MIT1002_00705 at 772.255 kb on + strand, within MIT1002_00705 at 772.340 kb on - strand, within MIT1002_00705 at 772.340 kb on - strand, within MIT1002_00705 at 772.367 kb on + strand, within MIT1002_00705 at 772.438 kb on + strand at 772.530 kb on - strand at 772.629 kb on + strand at 772.761 kb on - strand, within MIT1002_00706 at 772.800 kb on + strand, within MIT1002_00706 at 772.813 kb on - strand, within MIT1002_00706 at 772.906 kb on + strand, within MIT1002_00706 at 772.906 kb on + strand, within MIT1002_00706 at 772.914 kb on - strand, within MIT1002_00706 at 772.954 kb on - strand, within MIT1002_00706 at 773.027 kb on + strand, within MIT1002_00706 at 773.050 kb on + strand, within MIT1002_00706 at 773.050 kb on + strand, within MIT1002_00706 at 773.057 kb on + strand, within MIT1002_00706 at 773.062 kb on + strand, within MIT1002_00706 at 773.070 kb on - strand, within MIT1002_00706 at 773.070 kb on - strand, within MIT1002_00706 at 773.070 kb on - strand, within MIT1002_00706 at 773.070 kb on - strand, within MIT1002_00706 at 773.134 kb on - strand, within MIT1002_00706 at 773.142 kb on - strand, within MIT1002_00706 at 773.206 kb on + strand, within MIT1002_00706 at 773.214 kb on - strand, within MIT1002_00706 at 773.275 kb on - strand, within MIT1002_00706 at 773.294 kb on + strand, within MIT1002_00706 at 773.314 kb on + strand, within MIT1002_00706 at 773.343 kb on + strand, within MIT1002_00706
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5 remove 771,022 + +0.5 771,029 - -0.4 771,029 - +1.1 771,060 - MIT1002_00703 0.15 -1.5 771,079 - MIT1002_00703 0.18 -1.7 771,112 + MIT1002_00703 0.23 -0.4 771,141 - MIT1002_00703 0.27 +0.3 771,219 + MIT1002_00703 0.39 +1.2 771,222 - MIT1002_00703 0.40 +0.1 771,227 - MIT1002_00703 0.40 +0.6 771,264 + MIT1002_00703 0.46 +1.6 771,376 - MIT1002_00703 0.63 -1.1 771,583 + +2.2 771,583 + -1.0 771,588 + -0.7 771,596 - +1.3 771,596 - -1.1 771,670 - MIT1002_00704 0.35 -0.9 771,681 - MIT1002_00704 0.38 -0.3 771,708 + MIT1002_00704 0.46 -1.3 771,732 - MIT1002_00704 0.53 -0.9 771,803 + MIT1002_00704 0.74 -1.7 771,844 + MIT1002_00704 0.86 +0.7 771,844 + MIT1002_00704 0.86 -0.5 771,928 - -0.4 771,937 + +0.5 771,974 - -0.6 772,022 - MIT1002_00705 0.18 -0.1 772,116 - MIT1002_00705 0.34 +0.1 772,137 - MIT1002_00705 0.38 +0.3 772,195 + MIT1002_00705 0.48 +0.7 772,209 - MIT1002_00705 0.51 +1.6 772,209 - MIT1002_00705 0.51 -1.2 772,255 + MIT1002_00705 0.59 -0.2 772,340 - MIT1002_00705 0.74 -1.3 772,340 - MIT1002_00705 0.74 +0.3 772,367 + MIT1002_00705 0.79 -0.0 772,438 + -0.4 772,530 - +1.4 772,629 + +0.2 772,761 - MIT1002_00706 0.17 +0.3 772,800 + MIT1002_00706 0.20 +0.0 772,813 - MIT1002_00706 0.20 -1.3 772,906 + MIT1002_00706 0.26 -0.3 772,906 + MIT1002_00706 0.26 -0.8 772,914 - MIT1002_00706 0.27 +0.8 772,954 - MIT1002_00706 0.29 +2.2 773,027 + MIT1002_00706 0.34 -0.7 773,050 + MIT1002_00706 0.35 -1.1 773,050 + MIT1002_00706 0.35 -0.1 773,057 + MIT1002_00706 0.36 -0.6 773,062 + MIT1002_00706 0.36 +0.5 773,070 - MIT1002_00706 0.36 +0.3 773,070 - MIT1002_00706 0.36 +1.1 773,070 - MIT1002_00706 0.36 -1.0 773,070 - MIT1002_00706 0.36 +0.6 773,134 - MIT1002_00706 0.40 -0.5 773,142 - MIT1002_00706 0.41 -0.4 773,206 + MIT1002_00706 0.45 +1.2 773,214 - MIT1002_00706 0.45 +0.4 773,275 - MIT1002_00706 0.49 -0.1 773,294 + MIT1002_00706 0.50 -1.2 773,314 + MIT1002_00706 0.52 -2.3 773,343 + MIT1002_00706 0.53 +0.9
Or see this region's nucleotide sequence