Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00677

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00676 and MIT1002_00677 are separated by 212 nucleotidesMIT1002_00677 and MIT1002_00678 are separated by 178 nucleotides MIT1002_00676: MIT1002_00676 - hypothetical protein, at 740,589 to 741,263 _00676 MIT1002_00677: MIT1002_00677 - Fructose-1-phosphate phosphatase YqaB, at 741,476 to 742,177 _00677 MIT1002_00678: MIT1002_00678 - putative periplasmic lipoprotein, at 742,356 to 743,651 _00678 Position (kb) 741 742 743Strain fitness (log2 ratio) -2 -1 0 1 2at 740.529 kb on - strandat 740.550 kb on + strandat 740.654 kb on + strandat 740.728 kb on + strand, within MIT1002_00676at 740.791 kb on - strand, within MIT1002_00676at 740.816 kb on + strand, within MIT1002_00676at 740.824 kb on + strand, within MIT1002_00676at 740.824 kb on - strand, within MIT1002_00676at 740.852 kb on + strand, within MIT1002_00676at 740.852 kb on + strand, within MIT1002_00676at 740.852 kb on + strand, within MIT1002_00676at 740.860 kb on - strand, within MIT1002_00676at 740.860 kb on - strand, within MIT1002_00676at 740.860 kb on - strand, within MIT1002_00676at 740.860 kb on - strand, within MIT1002_00676at 740.884 kb on - strand, within MIT1002_00676at 740.922 kb on + strand, within MIT1002_00676at 741.003 kb on - strand, within MIT1002_00676at 741.010 kb on + strand, within MIT1002_00676at 741.026 kb on + strand, within MIT1002_00676at 741.129 kb on + strand, within MIT1002_00676at 741.130 kb on - strand, within MIT1002_00676at 741.132 kb on + strand, within MIT1002_00676at 741.134 kb on + strand, within MIT1002_00676at 741.140 kb on - strand, within MIT1002_00676at 741.174 kb on - strand, within MIT1002_00676at 741.309 kb on + strandat 741.309 kb on + strandat 741.312 kb on - strandat 741.314 kb on + strandat 741.330 kb on + strandat 741.330 kb on + strandat 741.330 kb on + strandat 741.338 kb on - strandat 741.338 kb on - strandat 741.338 kb on - strandat 741.348 kb on - strandat 741.392 kb on + strandat 741.392 kb on + strandat 741.392 kb on + strandat 741.400 kb on - strandat 741.400 kb on - strandat 741.400 kb on - strandat 741.408 kb on - strandat 741.417 kb on + strandat 741.425 kb on - strandat 741.484 kb on + strandat 741.501 kb on - strandat 741.727 kb on + strand, within MIT1002_00677at 741.818 kb on - strand, within MIT1002_00677at 741.818 kb on - strand, within MIT1002_00677at 741.840 kb on - strand, within MIT1002_00677at 741.848 kb on - strand, within MIT1002_00677at 741.916 kb on - strand, within MIT1002_00677at 741.941 kb on + strand, within MIT1002_00677at 741.949 kb on + strand, within MIT1002_00677at 741.949 kb on + strand, within MIT1002_00677at 741.957 kb on - strand, within MIT1002_00677at 741.977 kb on - strand, within MIT1002_00677at 741.977 kb on - strand, within MIT1002_00677at 742.064 kb on + strand, within MIT1002_00677at 742.064 kb on + strand, within MIT1002_00677at 742.072 kb on - strand, within MIT1002_00677at 742.072 kb on - strand, within MIT1002_00677at 742.127 kb on + strandat 742.132 kb on + strandat 742.191 kb on + strandat 742.256 kb on - strandat 742.261 kb on + strandat 742.377 kb on - strandat 742.407 kb on + strandat 742.479 kb on - strandat 742.488 kb on + strand, within MIT1002_00678at 742.488 kb on + strand, within MIT1002_00678at 742.492 kb on - strand, within MIT1002_00678at 742.498 kb on - strand, within MIT1002_00678at 742.498 kb on - strand, within MIT1002_00678at 742.515 kb on - strand, within MIT1002_00678at 742.518 kb on - strand, within MIT1002_00678at 742.562 kb on - strand, within MIT1002_00678at 742.577 kb on + strand, within MIT1002_00678at 742.608 kb on + strand, within MIT1002_00678at 742.608 kb on + strand, within MIT1002_00678at 742.608 kb on + strand, within MIT1002_00678at 742.608 kb on + strand, within MIT1002_00678at 742.608 kb on + strand, within MIT1002_00678at 742.610 kb on + strand, within MIT1002_00678at 742.616 kb on - strand, within MIT1002_00678at 742.616 kb on - strand, within MIT1002_00678at 742.616 kb on - strand, within MIT1002_00678at 742.631 kb on + strand, within MIT1002_00678at 742.631 kb on + strand, within MIT1002_00678at 742.631 kb on + strand, within MIT1002_00678at 742.711 kb on - strand, within MIT1002_00678at 742.723 kb on + strand, within MIT1002_00678at 742.775 kb on - strand, within MIT1002_00678at 742.834 kb on - strand, within MIT1002_00678at 742.918 kb on + strand, within MIT1002_00678at 742.918 kb on + strand, within MIT1002_00678at 743.039 kb on - strand, within MIT1002_00678at 743.127 kb on + strand, within MIT1002_00678

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
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740,529 - +0.4
740,550 + +0.3
740,654 + -0.5
740,728 + MIT1002_00676 0.21 -0.6
740,791 - MIT1002_00676 0.30 +0.6
740,816 + MIT1002_00676 0.34 +0.3
740,824 + MIT1002_00676 0.35 +2.0
740,824 - MIT1002_00676 0.35 +0.8
740,852 + MIT1002_00676 0.39 -2.3
740,852 + MIT1002_00676 0.39 +0.1
740,852 + MIT1002_00676 0.39 -0.4
740,860 - MIT1002_00676 0.40 -2.5
740,860 - MIT1002_00676 0.40 +0.3
740,860 - MIT1002_00676 0.40 +0.3
740,860 - MIT1002_00676 0.40 -1.2
740,884 - MIT1002_00676 0.44 -0.9
740,922 + MIT1002_00676 0.49 -2.4
741,003 - MIT1002_00676 0.61 -1.4
741,010 + MIT1002_00676 0.62 +1.1
741,026 + MIT1002_00676 0.65 +1.0
741,129 + MIT1002_00676 0.80 -0.5
741,130 - MIT1002_00676 0.80 -0.1
741,132 + MIT1002_00676 0.80 +2.3
741,134 + MIT1002_00676 0.81 +0.2
741,140 - MIT1002_00676 0.82 -0.5
741,174 - MIT1002_00676 0.87 -2.1
741,309 + -0.8
741,309 + -1.1
741,312 - +1.2
741,314 + +0.4
741,330 + +0.0
741,330 + +0.0
741,330 + +1.5
741,338 - -0.4
741,338 - -0.0
741,338 - +0.6
741,348 - +0.6
741,392 + +0.8
741,392 + -0.4
741,392 + -1.2
741,400 - +0.6
741,400 - -0.7
741,400 - +1.3
741,408 - -1.5
741,417 + -0.1
741,425 - +0.2
741,484 + +0.1
741,501 - +0.7
741,727 + MIT1002_00677 0.36 +0.2
741,818 - MIT1002_00677 0.49 -0.7
741,818 - MIT1002_00677 0.49 +0.9
741,840 - MIT1002_00677 0.52 +0.3
741,848 - MIT1002_00677 0.53 -1.2
741,916 - MIT1002_00677 0.63 +1.7
741,941 + MIT1002_00677 0.66 +0.3
741,949 + MIT1002_00677 0.67 -0.5
741,949 + MIT1002_00677 0.67 -0.5
741,957 - MIT1002_00677 0.69 +1.2
741,977 - MIT1002_00677 0.71 -1.3
741,977 - MIT1002_00677 0.71 -1.4
742,064 + MIT1002_00677 0.84 +1.2
742,064 + MIT1002_00677 0.84 -1.1
742,072 - MIT1002_00677 0.85 +0.3
742,072 - MIT1002_00677 0.85 +0.2
742,127 + -0.3
742,132 + -0.0
742,191 + -2.3
742,256 - +1.6
742,261 + -0.7
742,377 - -1.9
742,407 + -0.3
742,479 - +0.1
742,488 + MIT1002_00678 0.10 -1.3
742,488 + MIT1002_00678 0.10 +0.4
742,492 - MIT1002_00678 0.10 -0.3
742,498 - MIT1002_00678 0.11 +1.3
742,498 - MIT1002_00678 0.11 -2.1
742,515 - MIT1002_00678 0.12 -1.6
742,518 - MIT1002_00678 0.12 +0.1
742,562 - MIT1002_00678 0.16 -0.9
742,577 + MIT1002_00678 0.17 -0.1
742,608 + MIT1002_00678 0.19 +0.3
742,608 + MIT1002_00678 0.19 +0.0
742,608 + MIT1002_00678 0.19 -0.4
742,608 + MIT1002_00678 0.19 +1.1
742,608 + MIT1002_00678 0.19 -0.1
742,610 + MIT1002_00678 0.20 +0.8
742,616 - MIT1002_00678 0.20 -0.4
742,616 - MIT1002_00678 0.20 -1.0
742,616 - MIT1002_00678 0.20 +1.3
742,631 + MIT1002_00678 0.21 -0.3
742,631 + MIT1002_00678 0.21 -0.2
742,631 + MIT1002_00678 0.21 +0.0
742,711 - MIT1002_00678 0.27 -0.1
742,723 + MIT1002_00678 0.28 +1.7
742,775 - MIT1002_00678 0.32 +0.5
742,834 - MIT1002_00678 0.37 -0.0
742,918 + MIT1002_00678 0.43 +0.9
742,918 + MIT1002_00678 0.43 +0.6
743,039 - MIT1002_00678 0.53 +0.5
743,127 + MIT1002_00678 0.59 +1.8

Or see this region's nucleotide sequence