Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00573 and MIT1002_00574 are separated by 81 nucleotides MIT1002_00574 and MIT1002_00575 are separated by 18 nucleotides
MIT1002_00573: MIT1002_00573 - Tyrosine recombinase XerD, at 616,416 to 617,369
_00573
MIT1002_00574: MIT1002_00574 - 3-ketoacyl-CoA thiolase, at 617,451 to 618,614
_00574
MIT1002_00575: MIT1002_00575 - Fatty acid oxidation complex subunit alpha, at 618,633 to 620,783
_00575
Position (kb) 617
618
619 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 616.461 kb on - strand at 616.564 kb on - strand, within MIT1002_00573 at 616.566 kb on + strand, within MIT1002_00573 at 616.574 kb on - strand, within MIT1002_00573 at 616.599 kb on + strand, within MIT1002_00573 at 616.607 kb on - strand, within MIT1002_00573 at 616.662 kb on - strand, within MIT1002_00573 at 616.703 kb on + strand, within MIT1002_00573 at 616.752 kb on + strand, within MIT1002_00573 at 616.792 kb on + strand, within MIT1002_00573 at 616.816 kb on + strand, within MIT1002_00573 at 617.046 kb on + strand, within MIT1002_00573 at 617.107 kb on - strand, within MIT1002_00573 at 617.202 kb on + strand, within MIT1002_00573 at 617.249 kb on + strand, within MIT1002_00573 at 617.257 kb on - strand, within MIT1002_00573 at 617.268 kb on + strand, within MIT1002_00573 at 617.276 kb on - strand at 617.285 kb on + strand at 617.328 kb on + strand at 617.333 kb on + strand at 617.333 kb on + strand at 617.344 kb on + strand at 617.472 kb on + strand at 617.480 kb on - strand at 617.492 kb on - strand at 617.524 kb on - strand at 617.539 kb on + strand at 617.580 kb on - strand, within MIT1002_00574 at 617.616 kb on - strand, within MIT1002_00574 at 617.620 kb on + strand, within MIT1002_00574 at 617.644 kb on - strand, within MIT1002_00574 at 617.649 kb on - strand, within MIT1002_00574 at 617.667 kb on - strand, within MIT1002_00574 at 617.689 kb on + strand, within MIT1002_00574 at 617.705 kb on + strand, within MIT1002_00574 at 617.773 kb on + strand, within MIT1002_00574 at 617.828 kb on + strand, within MIT1002_00574 at 617.834 kb on + strand, within MIT1002_00574 at 617.836 kb on - strand, within MIT1002_00574 at 617.884 kb on + strand, within MIT1002_00574 at 617.884 kb on + strand, within MIT1002_00574 at 617.884 kb on + strand, within MIT1002_00574 at 617.892 kb on - strand, within MIT1002_00574 at 617.892 kb on - strand, within MIT1002_00574 at 617.892 kb on - strand, within MIT1002_00574 at 617.892 kb on - strand, within MIT1002_00574 at 617.902 kb on - strand, within MIT1002_00574 at 617.932 kb on + strand, within MIT1002_00574 at 617.934 kb on + strand, within MIT1002_00574 at 617.934 kb on + strand, within MIT1002_00574 at 617.942 kb on - strand, within MIT1002_00574 at 617.989 kb on + strand, within MIT1002_00574 at 618.033 kb on + strand, within MIT1002_00574 at 618.044 kb on + strand, within MIT1002_00574 at 618.074 kb on + strand, within MIT1002_00574 at 618.075 kb on - strand, within MIT1002_00574 at 618.118 kb on + strand, within MIT1002_00574 at 618.131 kb on + strand, within MIT1002_00574 at 618.166 kb on + strand, within MIT1002_00574 at 618.166 kb on + strand, within MIT1002_00574 at 618.174 kb on - strand, within MIT1002_00574 at 618.201 kb on - strand, within MIT1002_00574 at 618.206 kb on - strand, within MIT1002_00574 at 618.250 kb on + strand, within MIT1002_00574 at 618.257 kb on + strand, within MIT1002_00574 at 618.343 kb on + strand, within MIT1002_00574 at 618.365 kb on + strand, within MIT1002_00574 at 618.373 kb on - strand, within MIT1002_00574 at 618.422 kb on - strand, within MIT1002_00574 at 618.437 kb on + strand, within MIT1002_00574 at 618.437 kb on + strand, within MIT1002_00574 at 618.437 kb on + strand, within MIT1002_00574 at 618.445 kb on - strand, within MIT1002_00574 at 618.447 kb on + strand, within MIT1002_00574 at 618.450 kb on - strand, within MIT1002_00574 at 618.487 kb on + strand, within MIT1002_00574 at 618.487 kb on + strand, within MIT1002_00574 at 618.489 kb on - strand, within MIT1002_00574 at 618.508 kb on + strand at 618.510 kb on + strand at 618.531 kb on - strand at 618.531 kb on - strand at 618.570 kb on + strand at 618.570 kb on + strand at 618.570 kb on + strand at 618.570 kb on + strand at 618.578 kb on - strand at 618.578 kb on - strand at 618.578 kb on - strand at 618.580 kb on - strand at 618.580 kb on - strand at 618.580 kb on - strand at 618.791 kb on + strand at 618.791 kb on + strand at 618.799 kb on - strand at 618.818 kb on - strand at 618.848 kb on + strand, within MIT1002_00575 at 618.848 kb on + strand, within MIT1002_00575 at 618.885 kb on + strand, within MIT1002_00575 at 618.904 kb on - strand, within MIT1002_00575 at 618.908 kb on - strand, within MIT1002_00575 at 618.973 kb on + strand, within MIT1002_00575 at 618.973 kb on + strand, within MIT1002_00575 at 618.981 kb on - strand, within MIT1002_00575 at 618.995 kb on + strand, within MIT1002_00575 at 619.003 kb on - strand, within MIT1002_00575 at 619.018 kb on + strand, within MIT1002_00575 at 619.037 kb on - strand, within MIT1002_00575 at 619.037 kb on - strand, within MIT1002_00575 at 619.051 kb on + strand, within MIT1002_00575 at 619.054 kb on - strand, within MIT1002_00575 at 619.059 kb on - strand, within MIT1002_00575 at 619.061 kb on + strand, within MIT1002_00575 at 619.069 kb on - strand, within MIT1002_00575 at 619.077 kb on + strand, within MIT1002_00575 at 619.118 kb on + strand, within MIT1002_00575 at 619.300 kb on - strand, within MIT1002_00575 at 619.313 kb on + strand, within MIT1002_00575 at 619.339 kb on - strand, within MIT1002_00575 at 619.367 kb on + strand, within MIT1002_00575 at 619.423 kb on - strand, within MIT1002_00575 at 619.423 kb on - strand, within MIT1002_00575 at 619.431 kb on + strand, within MIT1002_00575 at 619.446 kb on - strand, within MIT1002_00575 at 619.453 kb on + strand, within MIT1002_00575 at 619.457 kb on + strand, within MIT1002_00575 at 619.457 kb on + strand, within MIT1002_00575 at 619.528 kb on + strand, within MIT1002_00575 at 619.541 kb on - strand, within MIT1002_00575 at 619.550 kb on + strand, within MIT1002_00575 at 619.557 kb on + strand, within MIT1002_00575
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5 remove 616,461 - -0.8 616,564 - MIT1002_00573 0.16 -0.5 616,566 + MIT1002_00573 0.16 +0.8 616,574 - MIT1002_00573 0.17 +1.0 616,599 + MIT1002_00573 0.19 -0.4 616,607 - MIT1002_00573 0.20 +1.5 616,662 - MIT1002_00573 0.26 -1.0 616,703 + MIT1002_00573 0.30 -0.3 616,752 + MIT1002_00573 0.35 -2.2 616,792 + MIT1002_00573 0.39 -0.4 616,816 + MIT1002_00573 0.42 -0.5 617,046 + MIT1002_00573 0.66 -1.7 617,107 - MIT1002_00573 0.72 -0.4 617,202 + MIT1002_00573 0.82 -0.9 617,249 + MIT1002_00573 0.87 +0.3 617,257 - MIT1002_00573 0.88 -0.5 617,268 + MIT1002_00573 0.89 +0.7 617,276 - +1.1 617,285 + -0.5 617,328 + -1.8 617,333 + +0.5 617,333 + -0.2 617,344 + +2.9 617,472 + +2.2 617,480 - +0.7 617,492 - +0.4 617,524 - -2.7 617,539 + +0.9 617,580 - MIT1002_00574 0.11 -0.6 617,616 - MIT1002_00574 0.14 +0.2 617,620 + MIT1002_00574 0.15 -0.8 617,644 - MIT1002_00574 0.17 -1.6 617,649 - MIT1002_00574 0.17 +1.7 617,667 - MIT1002_00574 0.19 +0.9 617,689 + MIT1002_00574 0.20 -3.3 617,705 + MIT1002_00574 0.22 -0.4 617,773 + MIT1002_00574 0.28 -1.4 617,828 + MIT1002_00574 0.32 -1.2 617,834 + MIT1002_00574 0.33 -2.6 617,836 - MIT1002_00574 0.33 +0.3 617,884 + MIT1002_00574 0.37 +0.4 617,884 + MIT1002_00574 0.37 +0.7 617,884 + MIT1002_00574 0.37 -0.2 617,892 - MIT1002_00574 0.38 +0.5 617,892 - MIT1002_00574 0.38 -1.2 617,892 - MIT1002_00574 0.38 +2.1 617,892 - MIT1002_00574 0.38 -0.0 617,902 - MIT1002_00574 0.39 +1.1 617,932 + MIT1002_00574 0.41 -1.1 617,934 + MIT1002_00574 0.41 -1.3 617,934 + MIT1002_00574 0.41 -0.3 617,942 - MIT1002_00574 0.42 +0.0 617,989 + MIT1002_00574 0.46 -1.5 618,033 + MIT1002_00574 0.50 -1.0 618,044 + MIT1002_00574 0.51 -1.3 618,074 + MIT1002_00574 0.54 -2.1 618,075 - MIT1002_00574 0.54 -2.9 618,118 + MIT1002_00574 0.57 +0.2 618,131 + MIT1002_00574 0.58 +0.0 618,166 + MIT1002_00574 0.61 -0.2 618,166 + MIT1002_00574 0.61 +0.2 618,174 - MIT1002_00574 0.62 -0.2 618,201 - MIT1002_00574 0.64 -2.8 618,206 - MIT1002_00574 0.65 -0.3 618,250 + MIT1002_00574 0.69 +0.9 618,257 + MIT1002_00574 0.69 +0.9 618,343 + MIT1002_00574 0.77 +0.7 618,365 + MIT1002_00574 0.79 +0.2 618,373 - MIT1002_00574 0.79 +1.4 618,422 - MIT1002_00574 0.83 +0.4 618,437 + MIT1002_00574 0.85 +0.1 618,437 + MIT1002_00574 0.85 +0.3 618,437 + MIT1002_00574 0.85 -0.5 618,445 - MIT1002_00574 0.85 -1.4 618,447 + MIT1002_00574 0.86 -0.3 618,450 - MIT1002_00574 0.86 -0.3 618,487 + MIT1002_00574 0.89 +0.8 618,487 + MIT1002_00574 0.89 +0.1 618,489 - MIT1002_00574 0.89 +0.7 618,508 + +0.2 618,510 + -1.0 618,531 - +0.5 618,531 - +0.3 618,570 + -0.5 618,570 + +0.5 618,570 + -2.0 618,570 + +1.5 618,578 - +0.4 618,578 - -0.6 618,578 - -1.0 618,580 - -0.0 618,580 - +0.5 618,580 - -0.6 618,791 + +1.1 618,791 + +2.9 618,799 - +4.2 618,818 - +0.5 618,848 + MIT1002_00575 0.10 +0.7 618,848 + MIT1002_00575 0.10 +2.5 618,885 + MIT1002_00575 0.12 +2.6 618,904 - MIT1002_00575 0.13 +1.7 618,908 - MIT1002_00575 0.13 +1.1 618,973 + MIT1002_00575 0.16 +4.3 618,973 + MIT1002_00575 0.16 +1.4 618,981 - MIT1002_00575 0.16 +3.5 618,995 + MIT1002_00575 0.17 +1.2 619,003 - MIT1002_00575 0.17 +0.1 619,018 + MIT1002_00575 0.18 +1.4 619,037 - MIT1002_00575 0.19 +0.7 619,037 - MIT1002_00575 0.19 +1.2 619,051 + MIT1002_00575 0.19 +2.7 619,054 - MIT1002_00575 0.20 +2.6 619,059 - MIT1002_00575 0.20 +2.4 619,061 + MIT1002_00575 0.20 +2.1 619,069 - MIT1002_00575 0.20 +3.1 619,077 + MIT1002_00575 0.21 -0.0 619,118 + MIT1002_00575 0.23 -0.1 619,300 - MIT1002_00575 0.31 +0.8 619,313 + MIT1002_00575 0.32 +0.5 619,339 - MIT1002_00575 0.33 -0.3 619,367 + MIT1002_00575 0.34 -1.8 619,423 - MIT1002_00575 0.37 -0.6 619,423 - MIT1002_00575 0.37 -0.9 619,431 + MIT1002_00575 0.37 -0.7 619,446 - MIT1002_00575 0.38 +0.7 619,453 + MIT1002_00575 0.38 +0.1 619,457 + MIT1002_00575 0.38 -2.9 619,457 + MIT1002_00575 0.38 +0.3 619,528 + MIT1002_00575 0.42 +0.5 619,541 - MIT1002_00575 0.42 +1.3 619,550 + MIT1002_00575 0.43 +0.4 619,557 + MIT1002_00575 0.43 +0.3
Or see this region's nucleotide sequence