Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00573

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00571 and MIT1002_00572 are separated by 157 nucleotidesMIT1002_00572 and MIT1002_00573 are separated by 271 nucleotidesMIT1002_00573 and MIT1002_00574 are separated by 81 nucleotides MIT1002_00571: MIT1002_00571 - Group II intron-encoded protein LtrA, at 614,449 to 615,798 _00571 MIT1002_00572: MIT1002_00572 - hypothetical protein, at 615,956 to 616,144 _00572 MIT1002_00573: MIT1002_00573 - Tyrosine recombinase XerD, at 616,416 to 617,369 _00573 MIT1002_00574: MIT1002_00574 - 3-ketoacyl-CoA thiolase, at 617,451 to 618,614 _00574 Position (kb) 616 617 618Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 615.874 kb on - strandat 615.924 kb on + strandat 615.978 kb on + strand, within MIT1002_00572at 615.978 kb on + strand, within MIT1002_00572at 615.986 kb on - strand, within MIT1002_00572at 615.986 kb on - strand, within MIT1002_00572at 615.986 kb on - strand, within MIT1002_00572at 615.986 kb on - strand, within MIT1002_00572at 616.022 kb on + strand, within MIT1002_00572at 616.103 kb on + strand, within MIT1002_00572at 616.103 kb on + strand, within MIT1002_00572at 616.111 kb on - strand, within MIT1002_00572at 616.219 kb on + strandat 616.238 kb on + strandat 616.271 kb on - strandat 616.432 kb on + strandat 616.437 kb on + strandat 616.445 kb on - strandat 616.445 kb on - strandat 616.445 kb on - strandat 616.461 kb on - strandat 616.564 kb on - strand, within MIT1002_00573at 616.566 kb on + strand, within MIT1002_00573at 616.574 kb on - strand, within MIT1002_00573at 616.599 kb on + strand, within MIT1002_00573at 616.607 kb on - strand, within MIT1002_00573at 616.662 kb on - strand, within MIT1002_00573at 616.703 kb on + strand, within MIT1002_00573at 616.752 kb on + strand, within MIT1002_00573at 616.792 kb on + strand, within MIT1002_00573at 616.816 kb on + strand, within MIT1002_00573at 617.046 kb on + strand, within MIT1002_00573at 617.107 kb on - strand, within MIT1002_00573at 617.202 kb on + strand, within MIT1002_00573at 617.249 kb on + strand, within MIT1002_00573at 617.257 kb on - strand, within MIT1002_00573at 617.268 kb on + strand, within MIT1002_00573at 617.276 kb on - strandat 617.285 kb on + strandat 617.328 kb on + strandat 617.333 kb on + strandat 617.333 kb on + strandat 617.344 kb on + strandat 617.472 kb on + strandat 617.480 kb on - strandat 617.492 kb on - strandat 617.524 kb on - strandat 617.539 kb on + strandat 617.580 kb on - strand, within MIT1002_00574at 617.616 kb on - strand, within MIT1002_00574at 617.620 kb on + strand, within MIT1002_00574at 617.644 kb on - strand, within MIT1002_00574at 617.649 kb on - strand, within MIT1002_00574at 617.667 kb on - strand, within MIT1002_00574at 617.689 kb on + strand, within MIT1002_00574at 617.705 kb on + strand, within MIT1002_00574at 617.773 kb on + strand, within MIT1002_00574at 617.828 kb on + strand, within MIT1002_00574at 617.834 kb on + strand, within MIT1002_00574at 617.836 kb on - strand, within MIT1002_00574at 617.884 kb on + strand, within MIT1002_00574at 617.884 kb on + strand, within MIT1002_00574at 617.884 kb on + strand, within MIT1002_00574at 617.892 kb on - strand, within MIT1002_00574at 617.892 kb on - strand, within MIT1002_00574at 617.892 kb on - strand, within MIT1002_00574at 617.892 kb on - strand, within MIT1002_00574at 617.902 kb on - strand, within MIT1002_00574at 617.932 kb on + strand, within MIT1002_00574at 617.934 kb on + strand, within MIT1002_00574at 617.934 kb on + strand, within MIT1002_00574at 617.942 kb on - strand, within MIT1002_00574at 617.989 kb on + strand, within MIT1002_00574at 618.033 kb on + strand, within MIT1002_00574at 618.044 kb on + strand, within MIT1002_00574at 618.074 kb on + strand, within MIT1002_00574at 618.075 kb on - strand, within MIT1002_00574at 618.118 kb on + strand, within MIT1002_00574at 618.131 kb on + strand, within MIT1002_00574at 618.166 kb on + strand, within MIT1002_00574at 618.166 kb on + strand, within MIT1002_00574at 618.174 kb on - strand, within MIT1002_00574at 618.201 kb on - strand, within MIT1002_00574at 618.206 kb on - strand, within MIT1002_00574at 618.250 kb on + strand, within MIT1002_00574at 618.257 kb on + strand, within MIT1002_00574at 618.343 kb on + strand, within MIT1002_00574at 618.365 kb on + strand, within MIT1002_00574

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
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615,874 - +1.1
615,924 + +1.4
615,978 + MIT1002_00572 0.12 -0.0
615,978 + MIT1002_00572 0.12 -2.1
615,986 - MIT1002_00572 0.16 +0.1
615,986 - MIT1002_00572 0.16 +0.4
615,986 - MIT1002_00572 0.16 -1.0
615,986 - MIT1002_00572 0.16 +0.1
616,022 + MIT1002_00572 0.35 -0.8
616,103 + MIT1002_00572 0.78 -1.7
616,103 + MIT1002_00572 0.78 +2.4
616,111 - MIT1002_00572 0.82 +0.6
616,219 + +0.3
616,238 + +0.7
616,271 - -0.1
616,432 + +1.5
616,437 + -1.3
616,445 - -0.0
616,445 - -1.9
616,445 - +0.8
616,461 - -0.8
616,564 - MIT1002_00573 0.16 -0.5
616,566 + MIT1002_00573 0.16 +0.8
616,574 - MIT1002_00573 0.17 +1.0
616,599 + MIT1002_00573 0.19 -0.4
616,607 - MIT1002_00573 0.20 +1.5
616,662 - MIT1002_00573 0.26 -1.0
616,703 + MIT1002_00573 0.30 -0.3
616,752 + MIT1002_00573 0.35 -2.2
616,792 + MIT1002_00573 0.39 -0.4
616,816 + MIT1002_00573 0.42 -0.5
617,046 + MIT1002_00573 0.66 -1.7
617,107 - MIT1002_00573 0.72 -0.4
617,202 + MIT1002_00573 0.82 -0.9
617,249 + MIT1002_00573 0.87 +0.3
617,257 - MIT1002_00573 0.88 -0.5
617,268 + MIT1002_00573 0.89 +0.7
617,276 - +1.1
617,285 + -0.5
617,328 + -1.8
617,333 + +0.5
617,333 + -0.2
617,344 + +2.9
617,472 + +2.2
617,480 - +0.7
617,492 - +0.4
617,524 - -2.7
617,539 + +0.9
617,580 - MIT1002_00574 0.11 -0.6
617,616 - MIT1002_00574 0.14 +0.2
617,620 + MIT1002_00574 0.15 -0.8
617,644 - MIT1002_00574 0.17 -1.6
617,649 - MIT1002_00574 0.17 +1.7
617,667 - MIT1002_00574 0.19 +0.9
617,689 + MIT1002_00574 0.20 -3.3
617,705 + MIT1002_00574 0.22 -0.4
617,773 + MIT1002_00574 0.28 -1.4
617,828 + MIT1002_00574 0.32 -1.2
617,834 + MIT1002_00574 0.33 -2.6
617,836 - MIT1002_00574 0.33 +0.3
617,884 + MIT1002_00574 0.37 +0.4
617,884 + MIT1002_00574 0.37 +0.7
617,884 + MIT1002_00574 0.37 -0.2
617,892 - MIT1002_00574 0.38 +0.5
617,892 - MIT1002_00574 0.38 -1.2
617,892 - MIT1002_00574 0.38 +2.1
617,892 - MIT1002_00574 0.38 -0.0
617,902 - MIT1002_00574 0.39 +1.1
617,932 + MIT1002_00574 0.41 -1.1
617,934 + MIT1002_00574 0.41 -1.3
617,934 + MIT1002_00574 0.41 -0.3
617,942 - MIT1002_00574 0.42 +0.0
617,989 + MIT1002_00574 0.46 -1.5
618,033 + MIT1002_00574 0.50 -1.0
618,044 + MIT1002_00574 0.51 -1.3
618,074 + MIT1002_00574 0.54 -2.1
618,075 - MIT1002_00574 0.54 -2.9
618,118 + MIT1002_00574 0.57 +0.2
618,131 + MIT1002_00574 0.58 +0.0
618,166 + MIT1002_00574 0.61 -0.2
618,166 + MIT1002_00574 0.61 +0.2
618,174 - MIT1002_00574 0.62 -0.2
618,201 - MIT1002_00574 0.64 -2.8
618,206 - MIT1002_00574 0.65 -0.3
618,250 + MIT1002_00574 0.69 +0.9
618,257 + MIT1002_00574 0.69 +0.9
618,343 + MIT1002_00574 0.77 +0.7
618,365 + MIT1002_00574 0.79 +0.2

Or see this region's nucleotide sequence