Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00519 and MIT1002_00520 overlap by 39 nucleotides MIT1002_00520 and MIT1002_00521 are separated by 278 nucleotides MIT1002_00521 and MIT1002_00522 overlap by 4 nucleotides
MIT1002_00519: MIT1002_00519 - Autoinducer 2 sensor kinase/phosphatase LuxQ, at 563,950 to 566,766
_00519
MIT1002_00520: MIT1002_00520 - Sodium/proton antiporter NhaA, at 566,728 to 568,002
_00520
MIT1002_00521: MIT1002_00521 - N5-carboxyaminoimidazole ribonucleotide mutase, at 568,281 to 568,775
_00521
MIT1002_00522: MIT1002_00522 - N5-carboxyaminoimidazole ribonucleotide synthase, at 568,772 to 569,908
_00522
Position (kb) 566
567
568
569 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 565.730 kb on + strand, within MIT1002_00519 at 565.880 kb on + strand, within MIT1002_00519 at 565.935 kb on + strand, within MIT1002_00519 at 565.943 kb on - strand, within MIT1002_00519 at 565.957 kb on + strand, within MIT1002_00519 at 565.964 kb on + strand, within MIT1002_00519 at 565.976 kb on + strand, within MIT1002_00519 at 566.006 kb on + strand, within MIT1002_00519 at 566.023 kb on - strand, within MIT1002_00519 at 566.071 kb on + strand, within MIT1002_00519 at 566.101 kb on - strand, within MIT1002_00519 at 566.102 kb on - strand, within MIT1002_00519 at 566.160 kb on - strand, within MIT1002_00519 at 566.230 kb on + strand, within MIT1002_00519 at 566.230 kb on + strand, within MIT1002_00519 at 566.230 kb on + strand, within MIT1002_00519 at 566.238 kb on - strand, within MIT1002_00519 at 566.238 kb on - strand, within MIT1002_00519 at 566.243 kb on - strand, within MIT1002_00519 at 566.301 kb on + strand, within MIT1002_00519 at 566.309 kb on - strand, within MIT1002_00519 at 566.390 kb on - strand, within MIT1002_00519 at 566.512 kb on + strand at 566.573 kb on + strand at 566.581 kb on - strand at 566.629 kb on - strand at 566.686 kb on + strand at 566.785 kb on - strand at 566.814 kb on + strand at 566.815 kb on + strand at 566.911 kb on - strand, within MIT1002_00520 at 566.950 kb on - strand, within MIT1002_00520 at 566.959 kb on + strand, within MIT1002_00520 at 566.967 kb on - strand, within MIT1002_00520 at 567.003 kb on + strand, within MIT1002_00520 at 567.023 kb on - strand, within MIT1002_00520 at 567.093 kb on + strand, within MIT1002_00520 at 567.115 kb on - strand, within MIT1002_00520 at 567.115 kb on - strand, within MIT1002_00520 at 567.258 kb on + strand, within MIT1002_00520 at 567.258 kb on + strand, within MIT1002_00520 at 567.266 kb on - strand, within MIT1002_00520 at 567.276 kb on - strand, within MIT1002_00520 at 567.398 kb on + strand, within MIT1002_00520 at 567.403 kb on - strand, within MIT1002_00520 at 567.403 kb on - strand, within MIT1002_00520 at 567.403 kb on - strand, within MIT1002_00520 at 567.405 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.428 kb on + strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.436 kb on - strand, within MIT1002_00520 at 567.528 kb on - strand, within MIT1002_00520 at 567.604 kb on - strand, within MIT1002_00520 at 567.644 kb on - strand, within MIT1002_00520 at 567.653 kb on - strand, within MIT1002_00520 at 567.721 kb on + strand, within MIT1002_00520 at 567.726 kb on + strand, within MIT1002_00520 at 567.750 kb on + strand, within MIT1002_00520 at 567.758 kb on - strand, within MIT1002_00520 at 567.762 kb on + strand, within MIT1002_00520 at 567.837 kb on - strand, within MIT1002_00520 at 567.837 kb on - strand, within MIT1002_00520 at 567.954 kb on - strand at 567.954 kb on - strand at 568.030 kb on - strand at 568.150 kb on + strand at 568.158 kb on - strand at 568.165 kb on + strand at 568.195 kb on - strand at 568.319 kb on - strand at 568.337 kb on - strand, within MIT1002_00521 at 568.405 kb on - strand, within MIT1002_00521 at 568.405 kb on - strand, within MIT1002_00521 at 568.435 kb on + strand, within MIT1002_00521 at 568.440 kb on - strand, within MIT1002_00521 at 568.515 kb on + strand, within MIT1002_00521 at 568.551 kb on - strand, within MIT1002_00521 at 568.561 kb on + strand, within MIT1002_00521 at 568.574 kb on + strand, within MIT1002_00521 at 568.799 kb on - strand at 568.926 kb on + strand, within MIT1002_00522 at 568.943 kb on - strand, within MIT1002_00522 at 568.946 kb on - strand, within MIT1002_00522 at 568.978 kb on - strand, within MIT1002_00522
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5 remove 565,730 + MIT1002_00519 0.63 -0.4 565,880 + MIT1002_00519 0.69 +0.3 565,935 + MIT1002_00519 0.70 -1.6 565,943 - MIT1002_00519 0.71 +0.3 565,957 + MIT1002_00519 0.71 +1.6 565,964 + MIT1002_00519 0.71 -0.6 565,976 + MIT1002_00519 0.72 +1.3 566,006 + MIT1002_00519 0.73 -0.7 566,023 - MIT1002_00519 0.74 +0.5 566,071 + MIT1002_00519 0.75 +1.6 566,101 - MIT1002_00519 0.76 -0.7 566,102 - MIT1002_00519 0.76 +0.2 566,160 - MIT1002_00519 0.78 -3.1 566,230 + MIT1002_00519 0.81 -0.6 566,230 + MIT1002_00519 0.81 +0.1 566,230 + MIT1002_00519 0.81 +3.4 566,238 - MIT1002_00519 0.81 +1.1 566,238 - MIT1002_00519 0.81 -0.7 566,243 - MIT1002_00519 0.81 -0.0 566,301 + MIT1002_00519 0.83 +1.9 566,309 - MIT1002_00519 0.84 -1.2 566,390 - MIT1002_00519 0.87 -0.0 566,512 + +0.3 566,573 + -0.5 566,581 - +0.0 566,629 - -0.8 566,686 + -1.7 566,785 - -1.4 566,814 + -0.7 566,815 + -2.3 566,911 - MIT1002_00520 0.14 +0.3 566,950 - MIT1002_00520 0.17 +0.8 566,959 + MIT1002_00520 0.18 +0.4 566,967 - MIT1002_00520 0.19 +0.9 567,003 + MIT1002_00520 0.22 -0.7 567,023 - MIT1002_00520 0.23 -1.2 567,093 + MIT1002_00520 0.29 -1.5 567,115 - MIT1002_00520 0.30 +0.7 567,115 - MIT1002_00520 0.30 +0.2 567,258 + MIT1002_00520 0.42 -0.4 567,258 + MIT1002_00520 0.42 -2.1 567,266 - MIT1002_00520 0.42 -0.9 567,276 - MIT1002_00520 0.43 -1.4 567,398 + MIT1002_00520 0.53 -0.6 567,403 - MIT1002_00520 0.53 -3.0 567,403 - MIT1002_00520 0.53 -0.4 567,403 - MIT1002_00520 0.53 -2.9 567,405 + MIT1002_00520 0.53 -1.0 567,428 + MIT1002_00520 0.55 -0.2 567,428 + MIT1002_00520 0.55 +0.7 567,428 + MIT1002_00520 0.55 +0.1 567,428 + MIT1002_00520 0.55 -0.1 567,428 + MIT1002_00520 0.55 -1.5 567,428 + MIT1002_00520 0.55 -1.5 567,428 + MIT1002_00520 0.55 -0.4 567,428 + MIT1002_00520 0.55 -0.8 567,428 + MIT1002_00520 0.55 -3.5 567,436 - MIT1002_00520 0.56 +0.7 567,436 - MIT1002_00520 0.56 -1.8 567,436 - MIT1002_00520 0.56 -0.0 567,436 - MIT1002_00520 0.56 -1.2 567,436 - MIT1002_00520 0.56 -0.9 567,436 - MIT1002_00520 0.56 +0.3 567,436 - MIT1002_00520 0.56 -4.1 567,436 - MIT1002_00520 0.56 -0.5 567,528 - MIT1002_00520 0.63 -1.2 567,604 - MIT1002_00520 0.69 +1.5 567,644 - MIT1002_00520 0.72 -1.5 567,653 - MIT1002_00520 0.73 +0.2 567,721 + MIT1002_00520 0.78 +0.1 567,726 + MIT1002_00520 0.78 -2.1 567,750 + MIT1002_00520 0.80 -0.9 567,758 - MIT1002_00520 0.81 -1.3 567,762 + MIT1002_00520 0.81 -2.2 567,837 - MIT1002_00520 0.87 -1.0 567,837 - MIT1002_00520 0.87 +0.7 567,954 - -1.2 567,954 - -0.2 568,030 - +0.1 568,150 + -0.4 568,158 - +1.6 568,165 + -0.0 568,195 - -0.7 568,319 - +0.3 568,337 - MIT1002_00521 0.11 +0.1 568,405 - MIT1002_00521 0.25 -2.0 568,405 - MIT1002_00521 0.25 -1.0 568,435 + MIT1002_00521 0.31 +0.5 568,440 - MIT1002_00521 0.32 -1.6 568,515 + MIT1002_00521 0.47 +0.3 568,551 - MIT1002_00521 0.55 -4.2 568,561 + MIT1002_00521 0.57 -2.1 568,574 + MIT1002_00521 0.59 -0.8 568,799 - -0.8 568,926 + MIT1002_00522 0.14 -2.4 568,943 - MIT1002_00522 0.15 -0.5 568,946 - MIT1002_00522 0.15 -4.3 568,978 - MIT1002_00522 0.18 -2.5
Or see this region's nucleotide sequence