Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00450

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00449 and MIT1002_00450 are separated by 2 nucleotidesMIT1002_00450 and MIT1002_00451 overlap by 4 nucleotidesMIT1002_00451 and MIT1002_00452 are separated by 2 nucleotides MIT1002_00449: MIT1002_00449 - Type IV pilus biogenesis and competence protein PilQ precursor, at 490,329 to 492,101 _00449 MIT1002_00450: MIT1002_00450 - Pilus assembly protein, PilP, at 492,104 to 492,631 _00450 MIT1002_00451: MIT1002_00451 - Pilus assembly protein, PilO, at 492,628 to 493,239 _00451 MIT1002_00452: MIT1002_00452 - Fimbrial assembly protein (PilN), at 493,242 to 493,820 _00452 Position (kb) 492 493Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 491.123 kb on + strand, within MIT1002_00449at 491.131 kb on - strand, within MIT1002_00449at 491.132 kb on + strand, within MIT1002_00449at 491.133 kb on + strand, within MIT1002_00449at 491.176 kb on + strand, within MIT1002_00449at 491.176 kb on + strand, within MIT1002_00449at 491.176 kb on + strand, within MIT1002_00449at 491.176 kb on + strand, within MIT1002_00449at 491.220 kb on + strand, within MIT1002_00449at 491.245 kb on - strand, within MIT1002_00449at 491.292 kb on + strand, within MIT1002_00449at 491.327 kb on - strand, within MIT1002_00449at 491.376 kb on + strand, within MIT1002_00449at 491.403 kb on - strand, within MIT1002_00449at 491.497 kb on + strand, within MIT1002_00449at 491.497 kb on + strand, within MIT1002_00449at 491.497 kb on + strand, within MIT1002_00449at 491.497 kb on + strand, within MIT1002_00449at 491.497 kb on + strand, within MIT1002_00449at 491.498 kb on - strand, within MIT1002_00449at 491.505 kb on - strand, within MIT1002_00449at 491.505 kb on - strand, within MIT1002_00449at 491.505 kb on - strand, within MIT1002_00449at 491.505 kb on - strand, within MIT1002_00449at 491.608 kb on + strand, within MIT1002_00449at 491.613 kb on + strand, within MIT1002_00449at 491.644 kb on - strand, within MIT1002_00449at 491.654 kb on - strand, within MIT1002_00449at 491.706 kb on + strand, within MIT1002_00449at 491.714 kb on - strand, within MIT1002_00449at 491.789 kb on + strand, within MIT1002_00449at 491.858 kb on + strand, within MIT1002_00449at 491.881 kb on + strand, within MIT1002_00449at 491.881 kb on - strand, within MIT1002_00449at 491.894 kb on - strand, within MIT1002_00449at 491.921 kb on - strand, within MIT1002_00449at 492.039 kb on - strandat 492.040 kb on + strandat 492.048 kb on - strandat 492.109 kb on - strandat 492.115 kb on - strandat 492.121 kb on + strandat 492.171 kb on + strand, within MIT1002_00450at 492.171 kb on + strand, within MIT1002_00450at 492.179 kb on - strand, within MIT1002_00450at 492.291 kb on + strand, within MIT1002_00450at 492.303 kb on + strand, within MIT1002_00450at 492.304 kb on - strand, within MIT1002_00450at 492.328 kb on + strand, within MIT1002_00450at 492.328 kb on + strand, within MIT1002_00450at 492.328 kb on + strand, within MIT1002_00450at 492.328 kb on + strand, within MIT1002_00450at 492.328 kb on + strand, within MIT1002_00450at 492.328 kb on + strand, within MIT1002_00450at 492.328 kb on + strand, within MIT1002_00450at 492.336 kb on - strand, within MIT1002_00450at 492.336 kb on - strand, within MIT1002_00450at 492.336 kb on - strand, within MIT1002_00450at 492.336 kb on - strand, within MIT1002_00450at 492.371 kb on - strand, within MIT1002_00450at 492.426 kb on + strand, within MIT1002_00450at 492.484 kb on - strand, within MIT1002_00450at 492.484 kb on - strand, within MIT1002_00450at 492.535 kb on + strand, within MIT1002_00450at 492.535 kb on + strand, within MIT1002_00450at 492.535 kb on + strand, within MIT1002_00450at 492.535 kb on + strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.543 kb on - strand, within MIT1002_00450at 492.547 kb on + strand, within MIT1002_00450at 492.547 kb on + strand, within MIT1002_00450at 492.547 kb on + strand, within MIT1002_00450at 492.547 kb on + strand, within MIT1002_00450at 492.547 kb on + strand, within MIT1002_00450at 492.547 kb on + strand, within MIT1002_00450at 492.547 kb on + strand, within MIT1002_00450at 492.547 kb on + strand, within MIT1002_00450at 492.547 kb on + strand, within MIT1002_00450at 492.554 kb on + strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.555 kb on - strand, within MIT1002_00450at 492.562 kb on - strand, within MIT1002_00450at 492.569 kb on + strand, within MIT1002_00450at 492.610 kb on - strandat 492.649 kb on - strandat 492.649 kb on - strandat 492.715 kb on - strand, within MIT1002_00451at 492.743 kb on - strand, within MIT1002_00451at 492.748 kb on + strand, within MIT1002_00451at 492.756 kb on - strand, within MIT1002_00451at 492.756 kb on - strand, within MIT1002_00451at 492.756 kb on - strand, within MIT1002_00451at 492.756 kb on - strand, within MIT1002_00451at 492.795 kb on - strand, within MIT1002_00451at 492.816 kb on - strand, within MIT1002_00451at 492.874 kb on + strand, within MIT1002_00451at 492.875 kb on - strand, within MIT1002_00451at 492.879 kb on + strand, within MIT1002_00451at 492.879 kb on + strand, within MIT1002_00451at 492.947 kb on + strand, within MIT1002_00451at 492.957 kb on - strand, within MIT1002_00451at 492.959 kb on + strand, within MIT1002_00451at 493.019 kb on + strand, within MIT1002_00451at 493.045 kb on + strand, within MIT1002_00451at 493.109 kb on + strand, within MIT1002_00451at 493.124 kb on + strand, within MIT1002_00451at 493.126 kb on + strand, within MIT1002_00451at 493.287 kb on - strandat 493.287 kb on - strandat 493.288 kb on - strandat 493.288 kb on - strandat 493.288 kb on - strandat 493.342 kb on + strand, within MIT1002_00452at 493.479 kb on - strand, within MIT1002_00452at 493.487 kb on - strand, within MIT1002_00452at 493.517 kb on + strand, within MIT1002_00452at 493.556 kb on - strand, within MIT1002_00452at 493.574 kb on + strand, within MIT1002_00452

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
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491,123 + MIT1002_00449 0.45 +3.1
491,131 - MIT1002_00449 0.45 -0.1
491,132 + MIT1002_00449 0.45 -1.0
491,133 + MIT1002_00449 0.45 -0.1
491,176 + MIT1002_00449 0.48 -0.8
491,176 + MIT1002_00449 0.48 +1.0
491,176 + MIT1002_00449 0.48 +0.4
491,176 + MIT1002_00449 0.48 +0.9
491,220 + MIT1002_00449 0.50 -1.4
491,245 - MIT1002_00449 0.52 +0.3
491,292 + MIT1002_00449 0.54 +0.3
491,327 - MIT1002_00449 0.56 +0.1
491,376 + MIT1002_00449 0.59 -3.0
491,403 - MIT1002_00449 0.61 -3.9
491,497 + MIT1002_00449 0.66 +0.2
491,497 + MIT1002_00449 0.66 +1.0
491,497 + MIT1002_00449 0.66 -1.1
491,497 + MIT1002_00449 0.66 +1.7
491,497 + MIT1002_00449 0.66 -0.2
491,498 - MIT1002_00449 0.66 +1.1
491,505 - MIT1002_00449 0.66 +0.1
491,505 - MIT1002_00449 0.66 +1.1
491,505 - MIT1002_00449 0.66 +1.4
491,505 - MIT1002_00449 0.66 -0.7
491,608 + MIT1002_00449 0.72 +1.0
491,613 + MIT1002_00449 0.72 -0.1
491,644 - MIT1002_00449 0.74 -0.8
491,654 - MIT1002_00449 0.75 -0.5
491,706 + MIT1002_00449 0.78 +0.5
491,714 - MIT1002_00449 0.78 -0.1
491,789 + MIT1002_00449 0.82 -1.4
491,858 + MIT1002_00449 0.86 +2.0
491,881 + MIT1002_00449 0.88 -0.9
491,881 - MIT1002_00449 0.88 +0.8
491,894 - MIT1002_00449 0.88 +0.4
491,921 - MIT1002_00449 0.90 -1.5
492,039 - +0.7
492,040 + -0.7
492,048 - +0.8
492,109 - +0.6
492,115 - -0.1
492,121 + -0.5
492,171 + MIT1002_00450 0.13 -2.1
492,171 + MIT1002_00450 0.13 +1.8
492,179 - MIT1002_00450 0.14 -1.5
492,291 + MIT1002_00450 0.35 -0.4
492,303 + MIT1002_00450 0.38 -3.0
492,304 - MIT1002_00450 0.38 +0.4
492,328 + MIT1002_00450 0.42 +0.3
492,328 + MIT1002_00450 0.42 -1.2
492,328 + MIT1002_00450 0.42 -2.9
492,328 + MIT1002_00450 0.42 -3.3
492,328 + MIT1002_00450 0.42 +1.0
492,328 + MIT1002_00450 0.42 +0.4
492,328 + MIT1002_00450 0.42 +0.2
492,336 - MIT1002_00450 0.44 -0.4
492,336 - MIT1002_00450 0.44 +1.1
492,336 - MIT1002_00450 0.44 -1.1
492,336 - MIT1002_00450 0.44 -1.1
492,371 - MIT1002_00450 0.51 +0.9
492,426 + MIT1002_00450 0.61 -0.8
492,484 - MIT1002_00450 0.72 +0.6
492,484 - MIT1002_00450 0.72 +0.8
492,535 + MIT1002_00450 0.82 +0.7
492,535 + MIT1002_00450 0.82 -0.0
492,535 + MIT1002_00450 0.82 +0.0
492,535 + MIT1002_00450 0.82 +0.8
492,543 - MIT1002_00450 0.83 -0.6
492,543 - MIT1002_00450 0.83 -0.6
492,543 - MIT1002_00450 0.83 +0.1
492,543 - MIT1002_00450 0.83 +2.5
492,543 - MIT1002_00450 0.83 +2.7
492,543 - MIT1002_00450 0.83 +2.4
492,543 - MIT1002_00450 0.83 +0.5
492,543 - MIT1002_00450 0.83 +0.1
492,543 - MIT1002_00450 0.83 -0.4
492,543 - MIT1002_00450 0.83 +0.6
492,543 - MIT1002_00450 0.83 -0.2
492,543 - MIT1002_00450 0.83 -0.5
492,543 - MIT1002_00450 0.83 +3.1
492,543 - MIT1002_00450 0.83 -0.4
492,543 - MIT1002_00450 0.83 +0.9
492,543 - MIT1002_00450 0.83 +0.4
492,543 - MIT1002_00450 0.83 +0.6
492,543 - MIT1002_00450 0.83 +0.8
492,543 - MIT1002_00450 0.83 -0.2
492,547 + MIT1002_00450 0.84 +0.3
492,547 + MIT1002_00450 0.84 -3.7
492,547 + MIT1002_00450 0.84 -0.2
492,547 + MIT1002_00450 0.84 +0.8
492,547 + MIT1002_00450 0.84 -1.0
492,547 + MIT1002_00450 0.84 +0.6
492,547 + MIT1002_00450 0.84 +1.1
492,547 + MIT1002_00450 0.84 +1.2
492,547 + MIT1002_00450 0.84 +0.2
492,554 + MIT1002_00450 0.85 +0.8
492,555 - MIT1002_00450 0.85 +0.6
492,555 - MIT1002_00450 0.85 +0.2
492,555 - MIT1002_00450 0.85 +1.5
492,555 - MIT1002_00450 0.85 +0.1
492,555 - MIT1002_00450 0.85 -1.0
492,555 - MIT1002_00450 0.85 +0.5
492,555 - MIT1002_00450 0.85 -1.2
492,555 - MIT1002_00450 0.85 +2.4
492,555 - MIT1002_00450 0.85 -1.8
492,555 - MIT1002_00450 0.85 +2.7
492,555 - MIT1002_00450 0.85 -2.0
492,555 - MIT1002_00450 0.85 +1.1
492,555 - MIT1002_00450 0.85 -0.1
492,562 - MIT1002_00450 0.87 -0.7
492,569 + MIT1002_00450 0.88 -1.0
492,610 - -0.4
492,649 - +1.5
492,649 - -0.5
492,715 - MIT1002_00451 0.14 -2.2
492,743 - MIT1002_00451 0.19 +3.1
492,748 + MIT1002_00451 0.20 +2.1
492,756 - MIT1002_00451 0.21 -1.2
492,756 - MIT1002_00451 0.21 -0.6
492,756 - MIT1002_00451 0.21 -0.8
492,756 - MIT1002_00451 0.21 +0.9
492,795 - MIT1002_00451 0.27 +0.4
492,816 - MIT1002_00451 0.31 -1.5
492,874 + MIT1002_00451 0.40 +0.6
492,875 - MIT1002_00451 0.40 -1.0
492,879 + MIT1002_00451 0.41 -0.9
492,879 + MIT1002_00451 0.41 -1.4
492,947 + MIT1002_00451 0.52 +0.6
492,957 - MIT1002_00451 0.54 -0.1
492,959 + MIT1002_00451 0.54 -0.4
493,019 + MIT1002_00451 0.64 -0.9
493,045 + MIT1002_00451 0.68 +0.5
493,109 + MIT1002_00451 0.79 -1.6
493,124 + MIT1002_00451 0.81 +1.1
493,126 + MIT1002_00451 0.81 -1.4
493,287 - +0.0
493,287 - -0.5
493,288 - +0.4
493,288 - -0.6
493,288 - +1.1
493,342 + MIT1002_00452 0.17 -0.8
493,479 - MIT1002_00452 0.41 -0.7
493,487 - MIT1002_00452 0.42 +0.2
493,517 + MIT1002_00452 0.47 -2.2
493,556 - MIT1002_00452 0.54 +1.8
493,574 + MIT1002_00452 0.57 -2.2

Or see this region's nucleotide sequence