Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00423 and MIT1002_00424 are separated by 163 nucleotides MIT1002_00424 and MIT1002_00425 are separated by 129 nucleotides MIT1002_00425 and MIT1002_00426 overlap by 1 nucleotides
MIT1002_00423: MIT1002_00423 - Aspartate carbamoyltransferase catalytic chain, at 457,721 to 458,734
_00423
MIT1002_00424: MIT1002_00424 - Solvent efflux pump srpABC operon corepressor, at 458,898 to 459,545
_00424
MIT1002_00425: MIT1002_00425 - Cation efflux system protein CzcB, at 459,675 to 460,814
_00425
MIT1002_00426: MIT1002_00426 - Cation efflux system protein CzcA, at 460,814 to 463,960
_00426
Position (kb) 459
460
461 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 458.774 kb on - strand at 458.784 kb on + strand at 458.810 kb on - strand at 458.810 kb on - strand at 458.875 kb on + strand at 458.936 kb on - strand at 458.940 kb on + strand at 458.998 kb on + strand, within MIT1002_00424 at 459.008 kb on + strand, within MIT1002_00424 at 459.016 kb on - strand, within MIT1002_00424 at 459.018 kb on - strand, within MIT1002_00424 at 459.028 kb on + strand, within MIT1002_00424 at 459.028 kb on + strand, within MIT1002_00424 at 459.028 kb on + strand, within MIT1002_00424 at 459.028 kb on + strand, within MIT1002_00424 at 459.060 kb on - strand, within MIT1002_00424 at 459.082 kb on + strand, within MIT1002_00424 at 459.086 kb on - strand, within MIT1002_00424 at 459.122 kb on - strand, within MIT1002_00424 at 459.272 kb on + strand, within MIT1002_00424 at 459.290 kb on - strand, within MIT1002_00424 at 459.316 kb on - strand, within MIT1002_00424 at 459.326 kb on + strand, within MIT1002_00424 at 459.412 kb on + strand, within MIT1002_00424 at 459.412 kb on + strand, within MIT1002_00424 at 459.418 kb on - strand, within MIT1002_00424 at 459.418 kb on - strand, within MIT1002_00424 at 459.418 kb on - strand, within MIT1002_00424 at 459.440 kb on - strand, within MIT1002_00424 at 459.600 kb on - strand at 459.619 kb on + strand at 459.638 kb on + strand at 459.646 kb on - strand at 459.649 kb on + strand at 459.659 kb on + strand at 459.667 kb on - strand at 459.671 kb on + strand at 459.680 kb on - strand at 459.827 kb on + strand, within MIT1002_00425 at 459.981 kb on + strand, within MIT1002_00425 at 459.981 kb on + strand, within MIT1002_00425 at 459.989 kb on - strand, within MIT1002_00425 at 459.989 kb on - strand, within MIT1002_00425 at 459.989 kb on - strand, within MIT1002_00425 at 460.115 kb on + strand, within MIT1002_00425 at 460.153 kb on + strand, within MIT1002_00425 at 460.161 kb on - strand, within MIT1002_00425 at 460.442 kb on + strand, within MIT1002_00425 at 460.442 kb on + strand, within MIT1002_00425 at 460.442 kb on + strand, within MIT1002_00425 at 460.442 kb on + strand, within MIT1002_00425 at 460.442 kb on + strand, within MIT1002_00425 at 460.442 kb on + strand, within MIT1002_00425 at 460.450 kb on - strand, within MIT1002_00425 at 460.510 kb on + strand, within MIT1002_00425 at 460.556 kb on + strand, within MIT1002_00425 at 460.600 kb on - strand, within MIT1002_00425 at 460.661 kb on - strand, within MIT1002_00425 at 460.661 kb on - strand, within MIT1002_00425 at 460.751 kb on + strand at 460.754 kb on - strand at 460.775 kb on - strand at 460.786 kb on - strand at 460.793 kb on + strand at 460.808 kb on + strand at 460.852 kb on + strand at 461.137 kb on - strand, within MIT1002_00426 at 461.147 kb on - strand, within MIT1002_00426 at 461.170 kb on - strand, within MIT1002_00426 at 461.198 kb on + strand, within MIT1002_00426 at 461.318 kb on - strand, within MIT1002_00426 at 461.375 kb on + strand, within MIT1002_00426 at 461.438 kb on - strand, within MIT1002_00426 at 461.438 kb on - strand, within MIT1002_00426 at 461.458 kb on - strand, within MIT1002_00426 at 461.492 kb on - strand, within MIT1002_00426 at 461.515 kb on + strand, within MIT1002_00426 at 461.515 kb on + strand, within MIT1002_00426 at 461.523 kb on - strand, within MIT1002_00426 at 461.523 kb on - strand, within MIT1002_00426 at 461.583 kb on + strand, within MIT1002_00426 at 461.609 kb on + strand, within MIT1002_00426 at 461.631 kb on - strand, within MIT1002_00426 at 461.671 kb on - strand, within MIT1002_00426 at 461.736 kb on + strand, within MIT1002_00426 at 461.744 kb on - strand, within MIT1002_00426 at 461.782 kb on - strand, within MIT1002_00426
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5 remove 458,774 - -2.2 458,784 + -1.1 458,810 - -0.3 458,810 - -1.4 458,875 + +2.1 458,936 - +0.3 458,940 + +1.4 458,998 + MIT1002_00424 0.15 +0.2 459,008 + MIT1002_00424 0.17 +0.1 459,016 - MIT1002_00424 0.18 -0.0 459,018 - MIT1002_00424 0.19 +0.8 459,028 + MIT1002_00424 0.20 -1.4 459,028 + MIT1002_00424 0.20 -1.7 459,028 + MIT1002_00424 0.20 -1.0 459,028 + MIT1002_00424 0.20 +1.4 459,060 - MIT1002_00424 0.25 +2.9 459,082 + MIT1002_00424 0.28 +0.9 459,086 - MIT1002_00424 0.29 -0.1 459,122 - MIT1002_00424 0.35 -0.6 459,272 + MIT1002_00424 0.58 +1.8 459,290 - MIT1002_00424 0.60 -0.5 459,316 - MIT1002_00424 0.65 +1.0 459,326 + MIT1002_00424 0.66 -0.7 459,412 + MIT1002_00424 0.79 -0.3 459,412 + MIT1002_00424 0.79 +1.3 459,418 - MIT1002_00424 0.80 +0.5 459,418 - MIT1002_00424 0.80 +0.9 459,418 - MIT1002_00424 0.80 -0.2 459,440 - MIT1002_00424 0.84 +0.2 459,600 - +4.1 459,619 + -1.0 459,638 + -1.8 459,646 - -0.9 459,649 + -1.1 459,659 + +0.3 459,667 - +0.1 459,671 + -0.9 459,680 - +1.9 459,827 + MIT1002_00425 0.13 +1.2 459,981 + MIT1002_00425 0.27 +1.3 459,981 + MIT1002_00425 0.27 +1.7 459,989 - MIT1002_00425 0.28 +0.8 459,989 - MIT1002_00425 0.28 +1.3 459,989 - MIT1002_00425 0.28 +0.6 460,115 + MIT1002_00425 0.39 +1.3 460,153 + MIT1002_00425 0.42 +2.0 460,161 - MIT1002_00425 0.43 -0.3 460,442 + MIT1002_00425 0.67 +0.3 460,442 + MIT1002_00425 0.67 +2.2 460,442 + MIT1002_00425 0.67 +0.5 460,442 + MIT1002_00425 0.67 +0.4 460,442 + MIT1002_00425 0.67 +1.6 460,442 + MIT1002_00425 0.67 +0.4 460,450 - MIT1002_00425 0.68 +0.1 460,510 + MIT1002_00425 0.73 +1.6 460,556 + MIT1002_00425 0.77 +0.5 460,600 - MIT1002_00425 0.81 +0.6 460,661 - MIT1002_00425 0.86 +1.5 460,661 - MIT1002_00425 0.86 +1.2 460,751 + +0.4 460,754 - +0.9 460,775 - -0.3 460,786 - +0.2 460,793 + -0.4 460,808 + -0.2 460,852 + -0.2 461,137 - MIT1002_00426 0.10 -1.0 461,147 - MIT1002_00426 0.11 +3.3 461,170 - MIT1002_00426 0.11 +0.8 461,198 + MIT1002_00426 0.12 +1.3 461,318 - MIT1002_00426 0.16 +1.6 461,375 + MIT1002_00426 0.18 +0.7 461,438 - MIT1002_00426 0.20 -0.1 461,438 - MIT1002_00426 0.20 +1.3 461,458 - MIT1002_00426 0.20 +1.1 461,492 - MIT1002_00426 0.22 +1.5 461,515 + MIT1002_00426 0.22 +2.3 461,515 + MIT1002_00426 0.22 +0.1 461,523 - MIT1002_00426 0.23 +1.4 461,523 - MIT1002_00426 0.23 +1.1 461,583 + MIT1002_00426 0.24 +0.5 461,609 + MIT1002_00426 0.25 +1.0 461,631 - MIT1002_00426 0.26 +0.4 461,671 - MIT1002_00426 0.27 -0.1 461,736 + MIT1002_00426 0.29 +0.8 461,744 - MIT1002_00426 0.30 -0.7 461,782 - MIT1002_00426 0.31 +0.9
Or see this region's nucleotide sequence