Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00404

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00402 and MIT1002_00403 are separated by 148 nucleotidesMIT1002_00403 and MIT1002_00404 are separated by 111 nucleotidesMIT1002_00404 and MIT1002_00405 are separated by 185 nucleotides MIT1002_00402: MIT1002_00402 - Bacterial inner membrane protein, at 432,537 to 433,055 _00402 MIT1002_00403: MIT1002_00403 - hypothetical protein, at 433,204 to 433,644 _00403 MIT1002_00404: MIT1002_00404 - Formyltetrahydrofolate deformylase, at 433,756 to 434,610 _00404 MIT1002_00405: MIT1002_00405 - 2'-5'-RNA ligase, at 434,796 to 435,449 _00405 Position (kb) 433 434 435Strain fitness (log2 ratio) -2 -1 0 1 2 3at 432.876 kb on - strand, within MIT1002_00402at 432.905 kb on - strand, within MIT1002_00402at 432.905 kb on - strand, within MIT1002_00402at 432.906 kb on - strand, within MIT1002_00402at 432.906 kb on - strand, within MIT1002_00402at 432.971 kb on + strand, within MIT1002_00402at 433.022 kb on + strandat 433.088 kb on + strandat 433.101 kb on - strandat 433.103 kb on + strandat 433.133 kb on - strandat 433.170 kb on + strandat 433.212 kb on - strandat 433.241 kb on - strandat 433.251 kb on - strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.312 kb on + strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.320 kb on - strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.322 kb on + strand, within MIT1002_00403at 433.329 kb on + strand, within MIT1002_00403at 433.329 kb on + strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.330 kb on - strand, within MIT1002_00403at 433.457 kb on + strand, within MIT1002_00403at 433.457 kb on + strand, within MIT1002_00403at 433.465 kb on - strand, within MIT1002_00403at 433.465 kb on - strand, within MIT1002_00403at 433.478 kb on - strand, within MIT1002_00403at 433.478 kb on - strand, within MIT1002_00403at 433.508 kb on + strand, within MIT1002_00403at 433.536 kb on + strand, within MIT1002_00403at 433.536 kb on + strand, within MIT1002_00403at 433.537 kb on + strand, within MIT1002_00403at 433.545 kb on - strand, within MIT1002_00403at 433.608 kb on - strandat 433.623 kb on - strandat 433.808 kb on - strandat 433.815 kb on - strandat 433.863 kb on + strand, within MIT1002_00404at 433.877 kb on + strand, within MIT1002_00404at 433.885 kb on - strand, within MIT1002_00404at 433.896 kb on + strand, within MIT1002_00404at 433.904 kb on - strand, within MIT1002_00404at 433.909 kb on - strand, within MIT1002_00404at 433.913 kb on + strand, within MIT1002_00404at 433.968 kb on + strand, within MIT1002_00404at 433.981 kb on + strand, within MIT1002_00404at 434.001 kb on + strand, within MIT1002_00404at 434.008 kb on - strand, within MIT1002_00404at 434.047 kb on + strand, within MIT1002_00404at 434.177 kb on + strand, within MIT1002_00404at 434.213 kb on - strand, within MIT1002_00404at 434.259 kb on + strand, within MIT1002_00404at 434.264 kb on + strand, within MIT1002_00404at 434.274 kb on + strand, within MIT1002_00404at 434.279 kb on - strand, within MIT1002_00404at 434.301 kb on + strand, within MIT1002_00404at 434.340 kb on - strand, within MIT1002_00404at 434.378 kb on - strand, within MIT1002_00404at 434.378 kb on - strand, within MIT1002_00404at 434.422 kb on + strand, within MIT1002_00404at 434.430 kb on - strand, within MIT1002_00404at 434.571 kb on + strandat 434.581 kb on + strandat 434.581 kb on + strandat 434.589 kb on - strandat 434.641 kb on + strandat 434.641 kb on + strandat 434.664 kb on + strandat 434.690 kb on - strandat 434.690 kb on - strandat 434.691 kb on - strandat 434.691 kb on - strandat 434.719 kb on + strandat 434.725 kb on + strandat 434.733 kb on - strandat 434.771 kb on + strandat 434.781 kb on + strandat 434.789 kb on - strandat 434.822 kb on + strandat 434.836 kb on - strandat 434.854 kb on + strandat 434.854 kb on + strandat 434.862 kb on - strand, within MIT1002_00405at 434.872 kb on + strand, within MIT1002_00405at 434.872 kb on + strand, within MIT1002_00405at 434.872 kb on + strand, within MIT1002_00405at 434.872 kb on + strand, within MIT1002_00405at 434.880 kb on - strand, within MIT1002_00405at 434.884 kb on - strand, within MIT1002_00405at 434.884 kb on - strand, within MIT1002_00405at 434.885 kb on - strand, within MIT1002_00405at 434.933 kb on + strand, within MIT1002_00405at 434.939 kb on + strand, within MIT1002_00405at 434.941 kb on - strand, within MIT1002_00405at 434.954 kb on + strand, within MIT1002_00405at 435.009 kb on - strand, within MIT1002_00405at 435.023 kb on - strand, within MIT1002_00405at 435.080 kb on + strand, within MIT1002_00405at 435.140 kb on + strand, within MIT1002_00405at 435.146 kb on + strand, within MIT1002_00405at 435.165 kb on + strand, within MIT1002_00405at 435.189 kb on + strand, within MIT1002_00405at 435.191 kb on + strand, within MIT1002_00405at 435.231 kb on + strand, within MIT1002_00405at 435.265 kb on + strand, within MIT1002_00405at 435.265 kb on + strand, within MIT1002_00405at 435.267 kb on + strand, within MIT1002_00405at 435.273 kb on - strand, within MIT1002_00405at 435.273 kb on - strand, within MIT1002_00405at 435.273 kb on - strand, within MIT1002_00405at 435.273 kb on - strand, within MIT1002_00405at 435.273 kb on - strand, within MIT1002_00405at 435.367 kb on + strand, within MIT1002_00405at 435.433 kb on - strandat 435.433 kb on - strandat 435.451 kb on + strandat 435.451 kb on + strandat 435.452 kb on - strandat 435.459 kb on - strandat 435.506 kb on + strandat 435.514 kb on - strandat 435.555 kb on + strandat 435.598 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
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432,876 - MIT1002_00402 0.65 +0.5
432,905 - MIT1002_00402 0.71 +1.1
432,905 - MIT1002_00402 0.71 +2.1
432,906 - MIT1002_00402 0.71 +0.3
432,906 - MIT1002_00402 0.71 +0.9
432,971 + MIT1002_00402 0.84 -0.3
433,022 + +0.9
433,088 + -0.0
433,101 - +1.1
433,103 + -1.3
433,133 - +0.5
433,170 + -2.5
433,212 - +1.3
433,241 - +0.3
433,251 - MIT1002_00403 0.11 -0.1
433,312 + MIT1002_00403 0.24 +0.9
433,312 + MIT1002_00403 0.24 +1.2
433,312 + MIT1002_00403 0.24 +0.8
433,312 + MIT1002_00403 0.24 -1.3
433,312 + MIT1002_00403 0.24 -1.3
433,312 + MIT1002_00403 0.24 -0.6
433,312 + MIT1002_00403 0.24 -0.7
433,312 + MIT1002_00403 0.24 -1.3
433,312 + MIT1002_00403 0.24 -0.6
433,312 + MIT1002_00403 0.24 +2.5
433,312 + MIT1002_00403 0.24 +0.1
433,320 - MIT1002_00403 0.26 -0.4
433,320 - MIT1002_00403 0.26 +0.4
433,320 - MIT1002_00403 0.26 +1.7
433,320 - MIT1002_00403 0.26 +0.6
433,320 - MIT1002_00403 0.26 +1.5
433,320 - MIT1002_00403 0.26 +0.5
433,320 - MIT1002_00403 0.26 +0.2
433,320 - MIT1002_00403 0.26 +0.0
433,320 - MIT1002_00403 0.26 +1.8
433,320 - MIT1002_00403 0.26 +0.7
433,320 - MIT1002_00403 0.26 +0.2
433,322 + MIT1002_00403 0.27 +0.5
433,322 + MIT1002_00403 0.27 +0.8
433,322 + MIT1002_00403 0.27 +2.3
433,322 + MIT1002_00403 0.27 +0.6
433,322 + MIT1002_00403 0.27 -0.9
433,322 + MIT1002_00403 0.27 -2.3
433,322 + MIT1002_00403 0.27 +1.2
433,322 + MIT1002_00403 0.27 +0.3
433,322 + MIT1002_00403 0.27 -0.7
433,322 + MIT1002_00403 0.27 +2.4
433,322 + MIT1002_00403 0.27 +1.3
433,322 + MIT1002_00403 0.27 +1.6
433,322 + MIT1002_00403 0.27 +2.4
433,322 + MIT1002_00403 0.27 +0.7
433,322 + MIT1002_00403 0.27 +1.4
433,322 + MIT1002_00403 0.27 -0.6
433,322 + MIT1002_00403 0.27 -0.9
433,322 + MIT1002_00403 0.27 +0.5
433,322 + MIT1002_00403 0.27 +1.1
433,322 + MIT1002_00403 0.27 +1.2
433,322 + MIT1002_00403 0.27 -0.9
433,329 + MIT1002_00403 0.28 +0.5
433,329 + MIT1002_00403 0.28 -0.5
433,330 - MIT1002_00403 0.29 -0.1
433,330 - MIT1002_00403 0.29 +0.6
433,330 - MIT1002_00403 0.29 +2.3
433,330 - MIT1002_00403 0.29 -0.8
433,330 - MIT1002_00403 0.29 +0.2
433,330 - MIT1002_00403 0.29 +1.5
433,330 - MIT1002_00403 0.29 -1.6
433,330 - MIT1002_00403 0.29 -2.3
433,330 - MIT1002_00403 0.29 -1.1
433,330 - MIT1002_00403 0.29 +0.1
433,330 - MIT1002_00403 0.29 +0.2
433,330 - MIT1002_00403 0.29 -0.8
433,330 - MIT1002_00403 0.29 +1.2
433,330 - MIT1002_00403 0.29 +0.5
433,330 - MIT1002_00403 0.29 -1.7
433,330 - MIT1002_00403 0.29 -0.4
433,330 - MIT1002_00403 0.29 -0.4
433,330 - MIT1002_00403 0.29 +0.3
433,330 - MIT1002_00403 0.29 -0.6
433,330 - MIT1002_00403 0.29 -0.7
433,330 - MIT1002_00403 0.29 -0.1
433,330 - MIT1002_00403 0.29 +1.6
433,330 - MIT1002_00403 0.29 +0.1
433,330 - MIT1002_00403 0.29 -1.3
433,457 + MIT1002_00403 0.57 +1.6
433,457 + MIT1002_00403 0.57 +3.4
433,465 - MIT1002_00403 0.59 +0.6
433,465 - MIT1002_00403 0.59 -0.6
433,478 - MIT1002_00403 0.62 +0.5
433,478 - MIT1002_00403 0.62 +0.4
433,508 + MIT1002_00403 0.69 -0.1
433,536 + MIT1002_00403 0.75 -2.2
433,536 + MIT1002_00403 0.75 -0.7
433,537 + MIT1002_00403 0.76 +1.1
433,545 - MIT1002_00403 0.77 +0.0
433,608 - +0.3
433,623 - -0.6
433,808 - -0.3
433,815 - -0.1
433,863 + MIT1002_00404 0.13 +0.3
433,877 + MIT1002_00404 0.14 +0.6
433,885 - MIT1002_00404 0.15 -0.6
433,896 + MIT1002_00404 0.16 -1.7
433,904 - MIT1002_00404 0.17 -2.6
433,909 - MIT1002_00404 0.18 -0.2
433,913 + MIT1002_00404 0.18 -1.2
433,968 + MIT1002_00404 0.25 -0.9
433,981 + MIT1002_00404 0.26 -1.7
434,001 + MIT1002_00404 0.29 +3.2
434,008 - MIT1002_00404 0.29 -0.9
434,047 + MIT1002_00404 0.34 -0.0
434,177 + MIT1002_00404 0.49 -0.7
434,213 - MIT1002_00404 0.53 -1.1
434,259 + MIT1002_00404 0.59 -1.9
434,264 + MIT1002_00404 0.59 +0.9
434,274 + MIT1002_00404 0.61 +0.7
434,279 - MIT1002_00404 0.61 +0.9
434,301 + MIT1002_00404 0.64 -2.3
434,340 - MIT1002_00404 0.68 +0.5
434,378 - MIT1002_00404 0.73 +1.5
434,378 - MIT1002_00404 0.73 -1.1
434,422 + MIT1002_00404 0.78 -2.7
434,430 - MIT1002_00404 0.79 -1.3
434,571 + +0.5
434,581 + +0.3
434,581 + -0.8
434,589 - +0.4
434,641 + +0.1
434,641 + +0.3
434,664 + -1.6
434,690 - -1.5
434,690 - +0.5
434,691 - +2.1
434,691 - +0.1
434,719 + -0.4
434,725 + +0.5
434,733 - -0.5
434,771 + +0.2
434,781 + -1.6
434,789 - +0.4
434,822 + +1.2
434,836 - -0.6
434,854 + -0.3
434,854 + -0.8
434,862 - MIT1002_00405 0.10 -0.8
434,872 + MIT1002_00405 0.12 +0.8
434,872 + MIT1002_00405 0.12 +0.4
434,872 + MIT1002_00405 0.12 -1.3
434,872 + MIT1002_00405 0.12 -1.7
434,880 - MIT1002_00405 0.13 +1.8
434,884 - MIT1002_00405 0.13 +2.7
434,884 - MIT1002_00405 0.13 -1.3
434,885 - MIT1002_00405 0.14 -0.2
434,933 + MIT1002_00405 0.21 -0.2
434,939 + MIT1002_00405 0.22 -1.4
434,941 - MIT1002_00405 0.22 +0.8
434,954 + MIT1002_00405 0.24 -0.1
435,009 - MIT1002_00405 0.33 -1.8
435,023 - MIT1002_00405 0.35 +0.5
435,080 + MIT1002_00405 0.43 -0.1
435,140 + MIT1002_00405 0.53 +0.4
435,146 + MIT1002_00405 0.54 +0.5
435,165 + MIT1002_00405 0.56 +1.1
435,189 + MIT1002_00405 0.60 +0.3
435,191 + MIT1002_00405 0.60 +0.1
435,231 + MIT1002_00405 0.67 +0.6
435,265 + MIT1002_00405 0.72 +2.1
435,265 + MIT1002_00405 0.72 -0.4
435,267 + MIT1002_00405 0.72 +0.3
435,273 - MIT1002_00405 0.73 -0.7
435,273 - MIT1002_00405 0.73 +0.4
435,273 - MIT1002_00405 0.73 -0.0
435,273 - MIT1002_00405 0.73 -1.6
435,273 - MIT1002_00405 0.73 -0.8
435,367 + MIT1002_00405 0.87 +0.5
435,433 - -0.3
435,433 - +2.0
435,451 + -0.7
435,451 + +0.8
435,452 - +0.6
435,459 - -1.1
435,506 + -1.0
435,514 - -0.4
435,555 + +0.8
435,598 - +0.8

Or see this region's nucleotide sequence