Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00330 and MIT1002_00331 are separated by 11 nucleotides MIT1002_00331 and MIT1002_00332 are separated by 8 nucleotides MIT1002_00332 and MIT1002_00333 overlap by 8 nucleotides
MIT1002_00330: MIT1002_00330 - Copper-exporting P-type ATPase A, at 356,036 to 358,279
_00330
MIT1002_00331: MIT1002_00331 - hypothetical protein, at 358,291 to 358,644
_00331
MIT1002_00332: MIT1002_00332 - hypothetical protein, at 358,653 to 358,991
_00332
MIT1002_00333: MIT1002_00333 - Putative protein-S-isoprenylcysteine methyltransferase, at 358,984 to 359,649
_00333
MIT1002_00334: MIT1002_00334 - hypothetical protein, at 359,633 to 360,043
_00334
Position (kb) 358
359 Strain fitness (log2 ratio) -2
-1
0
1 at 357.339 kb on - strand, within MIT1002_00330 at 357.374 kb on - strand, within MIT1002_00330 at 357.406 kb on - strand, within MIT1002_00330 at 357.410 kb on + strand, within MIT1002_00330 at 357.469 kb on + strand, within MIT1002_00330 at 357.469 kb on + strand, within MIT1002_00330 at 357.525 kb on - strand, within MIT1002_00330 at 357.583 kb on + strand, within MIT1002_00330 at 357.589 kb on + strand, within MIT1002_00330 at 357.591 kb on - strand, within MIT1002_00330 at 357.613 kb on - strand, within MIT1002_00330 at 357.646 kb on + strand, within MIT1002_00330 at 357.721 kb on + strand, within MIT1002_00330 at 357.760 kb on + strand, within MIT1002_00330 at 357.768 kb on - strand, within MIT1002_00330 at 357.924 kb on - strand, within MIT1002_00330 at 357.998 kb on - strand, within MIT1002_00330 at 358.054 kb on - strand, within MIT1002_00330 at 358.059 kb on + strand at 358.092 kb on - strand at 358.133 kb on + strand at 358.133 kb on + strand at 358.140 kb on - strand at 358.159 kb on - strand at 358.183 kb on - strand at 358.258 kb on + strand at 358.258 kb on + strand at 358.275 kb on + strand at 358.383 kb on - strand, within MIT1002_00331 at 358.424 kb on - strand, within MIT1002_00331 at 358.442 kb on + strand, within MIT1002_00331 at 358.564 kb on - strand, within MIT1002_00331 at 358.645 kb on - strand at 358.648 kb on - strand at 358.686 kb on + strand at 358.686 kb on + strand at 358.694 kb on - strand, within MIT1002_00332 at 358.709 kb on - strand, within MIT1002_00332 at 358.843 kb on - strand, within MIT1002_00332 at 358.931 kb on + strand, within MIT1002_00332 at 358.939 kb on + strand, within MIT1002_00332 at 358.958 kb on - strand at 358.973 kb on + strand at 358.999 kb on + strand at 359.005 kb on + strand at 359.012 kb on + strand at 359.140 kb on + strand, within MIT1002_00333 at 359.140 kb on + strand, within MIT1002_00333 at 359.185 kb on + strand, within MIT1002_00333 at 359.323 kb on + strand, within MIT1002_00333 at 359.344 kb on + strand, within MIT1002_00333 at 359.352 kb on - strand, within MIT1002_00333 at 359.352 kb on - strand, within MIT1002_00333 at 359.352 kb on - strand, within MIT1002_00333 at 359.402 kb on + strand, within MIT1002_00333 at 359.478 kb on + strand, within MIT1002_00333 at 359.478 kb on + strand, within MIT1002_00333 at 359.533 kb on + strand, within MIT1002_00333 at 359.541 kb on - strand, within MIT1002_00333 at 359.558 kb on + strand, within MIT1002_00333 at 359.588 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5 remove 357,339 - MIT1002_00330 0.58 -0.3 357,374 - MIT1002_00330 0.60 +0.9 357,406 - MIT1002_00330 0.61 +0.3 357,410 + MIT1002_00330 0.61 +1.1 357,469 + MIT1002_00330 0.64 +0.3 357,469 + MIT1002_00330 0.64 -2.0 357,525 - MIT1002_00330 0.66 -1.6 357,583 + MIT1002_00330 0.69 +1.2 357,589 + MIT1002_00330 0.69 -1.4 357,591 - MIT1002_00330 0.69 -1.6 357,613 - MIT1002_00330 0.70 -0.9 357,646 + MIT1002_00330 0.72 -0.2 357,721 + MIT1002_00330 0.75 +0.9 357,760 + MIT1002_00330 0.77 -0.6 357,768 - MIT1002_00330 0.77 +0.4 357,924 - MIT1002_00330 0.84 -0.5 357,998 - MIT1002_00330 0.87 +0.7 358,054 - MIT1002_00330 0.90 +1.0 358,059 + +0.8 358,092 - +0.0 358,133 + +0.7 358,133 + -0.2 358,140 - -0.2 358,159 - -0.1 358,183 - -0.3 358,258 + -0.4 358,258 + -0.7 358,275 + +1.1 358,383 - MIT1002_00331 0.26 -1.2 358,424 - MIT1002_00331 0.38 -0.2 358,442 + MIT1002_00331 0.43 +0.8 358,564 - MIT1002_00331 0.77 -0.1 358,645 - +1.6 358,648 - +1.3 358,686 + +1.3 358,686 + -1.5 358,694 - MIT1002_00332 0.12 -1.5 358,709 - MIT1002_00332 0.17 +0.5 358,843 - MIT1002_00332 0.56 -0.2 358,931 + MIT1002_00332 0.82 +0.5 358,939 + MIT1002_00332 0.84 -2.5 358,958 - -1.6 358,973 + -2.3 358,999 + -1.2 359,005 + +0.6 359,012 + +0.1 359,140 + MIT1002_00333 0.23 +0.2 359,140 + MIT1002_00333 0.23 +0.8 359,185 + MIT1002_00333 0.30 +0.8 359,323 + MIT1002_00333 0.51 +1.4 359,344 + MIT1002_00333 0.54 +0.3 359,352 - MIT1002_00333 0.55 -0.8 359,352 - MIT1002_00333 0.55 -0.2 359,352 - MIT1002_00333 0.55 +0.3 359,402 + MIT1002_00333 0.63 -0.5 359,478 + MIT1002_00333 0.74 -0.5 359,478 + MIT1002_00333 0.74 +0.5 359,533 + MIT1002_00333 0.82 -0.0 359,541 - MIT1002_00333 0.84 +1.1 359,558 + MIT1002_00333 0.86 -0.2 359,588 - -0.0
Or see this region's nucleotide sequence