Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00151 and MIT1002_00152 are separated by 66 nucleotides MIT1002_00152 and MIT1002_00153 are separated by 42 nucleotides
MIT1002_00151: MIT1002_00151 - putative chloramphenical resistance permease RarD, at 165,861 to 166,775
_00151
MIT1002_00152: MIT1002_00152 - putative diguanylate cyclase YdaM, at 166,842 to 168,119
_00152
MIT1002_00153: MIT1002_00153 - DNA helicase II, at 168,162 to 170,333
_00153
Position (kb)
166
167
168
169 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 165.872 kb on + strand at 165.872 kb on + strand at 165.928 kb on + strand at 165.953 kb on + strand, within MIT1002_00151 at 165.953 kb on + strand, within MIT1002_00151 at 165.980 kb on - strand, within MIT1002_00151 at 165.991 kb on + strand, within MIT1002_00151 at 166.010 kb on + strand, within MIT1002_00151 at 166.018 kb on - strand, within MIT1002_00151 at 166.022 kb on + strand, within MIT1002_00151 at 166.022 kb on + strand, within MIT1002_00151 at 166.033 kb on + strand, within MIT1002_00151 at 166.035 kb on + strand, within MIT1002_00151 at 166.045 kb on + strand, within MIT1002_00151 at 166.057 kb on + strand, within MIT1002_00151 at 166.334 kb on - strand, within MIT1002_00151 at 166.353 kb on - strand, within MIT1002_00151 at 166.353 kb on - strand, within MIT1002_00151 at 166.361 kb on - strand, within MIT1002_00151 at 166.459 kb on + strand, within MIT1002_00151 at 166.552 kb on - strand, within MIT1002_00151 at 166.582 kb on - strand, within MIT1002_00151 at 166.597 kb on - strand, within MIT1002_00151 at 166.609 kb on + strand, within MIT1002_00151 at 166.643 kb on - strand, within MIT1002_00151 at 166.662 kb on + strand, within MIT1002_00151 at 166.692 kb on - strand at 166.714 kb on + strand at 166.722 kb on - strand at 166.800 kb on - strand at 166.840 kb on + strand at 166.890 kb on - strand at 166.921 kb on + strand at 166.944 kb on + strand at 166.978 kb on + strand, within MIT1002_00152 at 167.022 kb on - strand, within MIT1002_00152 at 167.238 kb on + strand, within MIT1002_00152 at 167.284 kb on - strand, within MIT1002_00152 at 167.285 kb on + strand, within MIT1002_00152 at 167.291 kb on - strand, within MIT1002_00152 at 167.340 kb on - strand, within MIT1002_00152 at 167.352 kb on - strand, within MIT1002_00152 at 167.404 kb on - strand, within MIT1002_00152 at 167.417 kb on + strand, within MIT1002_00152 at 167.417 kb on + strand, within MIT1002_00152 at 167.425 kb on - strand, within MIT1002_00152 at 167.476 kb on + strand, within MIT1002_00152 at 167.478 kb on + strand, within MIT1002_00152 at 167.484 kb on - strand, within MIT1002_00152 at 167.628 kb on + strand, within MIT1002_00152 at 167.657 kb on - strand, within MIT1002_00152 at 167.674 kb on - strand, within MIT1002_00152 at 167.725 kb on - strand, within MIT1002_00152 at 167.794 kb on - strand, within MIT1002_00152 at 167.899 kb on - strand, within MIT1002_00152 at 167.966 kb on + strand, within MIT1002_00152 at 168.035 kb on + strand at 168.035 kb on + strand at 168.036 kb on + strand at 168.036 kb on + strand at 168.036 kb on + strand at 168.036 kb on + strand at 168.036 kb on + strand at 168.041 kb on + strand at 168.043 kb on - strand at 168.044 kb on - strand at 168.071 kb on + strand at 168.079 kb on - strand at 168.107 kb on - strand at 168.141 kb on - strand at 168.245 kb on + strand at 168.293 kb on + strand at 168.299 kb on - strand at 168.301 kb on - strand at 168.363 kb on + strand at 168.371 kb on - strand at 168.456 kb on - strand, within MIT1002_00153 at 168.472 kb on - strand, within MIT1002_00153 at 168.522 kb on - strand, within MIT1002_00153 at 168.610 kb on - strand, within MIT1002_00153 at 168.659 kb on - strand, within MIT1002_00153 at 168.689 kb on - strand, within MIT1002_00153 at 168.695 kb on + strand, within MIT1002_00153 at 168.696 kb on + strand, within MIT1002_00153 at 168.778 kb on - strand, within MIT1002_00153 at 168.780 kb on + strand, within MIT1002_00153 at 168.852 kb on - strand, within MIT1002_00153 at 168.852 kb on - strand, within MIT1002_00153 at 168.916 kb on - strand, within MIT1002_00153 at 168.952 kb on - strand, within MIT1002_00153 at 168.959 kb on - strand, within MIT1002_00153 at 169.029 kb on + strand, within MIT1002_00153 at 169.045 kb on + strand, within MIT1002_00153 at 169.055 kb on - strand, within MIT1002_00153
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5 remove 165,872 + -0.3 165,872 + -1.1 165,928 + +0.3 165,953 + MIT1002_00151 0.10 -1.5 165,953 + MIT1002_00151 0.10 +0.7 165,980 - MIT1002_00151 0.13 -0.7 165,991 + MIT1002_00151 0.14 -3.2 166,010 + MIT1002_00151 0.16 -1.2 166,018 - MIT1002_00151 0.17 +0.2 166,022 + MIT1002_00151 0.18 -2.7 166,022 + MIT1002_00151 0.18 -1.6 166,033 + MIT1002_00151 0.19 +1.5 166,035 + MIT1002_00151 0.19 +1.2 166,045 + MIT1002_00151 0.20 +0.9 166,057 + MIT1002_00151 0.21 -1.1 166,334 - MIT1002_00151 0.52 -2.4 166,353 - MIT1002_00151 0.54 -1.4 166,353 - MIT1002_00151 0.54 -0.7 166,361 - MIT1002_00151 0.55 -0.9 166,459 + MIT1002_00151 0.65 +1.1 166,552 - MIT1002_00151 0.76 -2.6 166,582 - MIT1002_00151 0.79 -0.3 166,597 - MIT1002_00151 0.80 -1.0 166,609 + MIT1002_00151 0.82 -0.2 166,643 - MIT1002_00151 0.85 -0.5 166,662 + MIT1002_00151 0.88 +0.6 166,692 - +2.4 166,714 + -1.3 166,722 - -0.5 166,800 - -1.0 166,840 + -0.8 166,890 - -0.7 166,921 + +0.0 166,944 + -1.0 166,978 + MIT1002_00152 0.11 +1.1 167,022 - MIT1002_00152 0.14 +1.8 167,238 + MIT1002_00152 0.31 +0.7 167,284 - MIT1002_00152 0.35 -0.9 167,285 + MIT1002_00152 0.35 -0.3 167,291 - MIT1002_00152 0.35 +1.5 167,340 - MIT1002_00152 0.39 +0.1 167,352 - MIT1002_00152 0.40 -1.6 167,404 - MIT1002_00152 0.44 +1.5 167,417 + MIT1002_00152 0.45 +1.1 167,417 + MIT1002_00152 0.45 +1.5 167,425 - MIT1002_00152 0.46 -0.8 167,476 + MIT1002_00152 0.50 +1.9 167,478 + MIT1002_00152 0.50 -1.5 167,484 - MIT1002_00152 0.50 +0.0 167,628 + MIT1002_00152 0.62 +1.2 167,657 - MIT1002_00152 0.64 +0.8 167,674 - MIT1002_00152 0.65 +0.5 167,725 - MIT1002_00152 0.69 -0.1 167,794 - MIT1002_00152 0.74 -1.2 167,899 - MIT1002_00152 0.83 +3.4 167,966 + MIT1002_00152 0.88 -0.4 168,035 + +0.5 168,035 + -2.5 168,036 + +0.8 168,036 + -2.2 168,036 + +0.5 168,036 + +0.3 168,036 + -0.9 168,041 + -0.2 168,043 - -1.4 168,044 - -1.1 168,071 + -2.1 168,079 - +0.9 168,107 - -0.2 168,141 - -1.6 168,245 + +1.9 168,293 + +0.2 168,299 - +0.5 168,301 - +1.7 168,363 + +0.9 168,371 - -0.2 168,456 - MIT1002_00153 0.14 -0.6 168,472 - MIT1002_00153 0.14 +0.4 168,522 - MIT1002_00153 0.17 -0.1 168,610 - MIT1002_00153 0.21 -0.5 168,659 - MIT1002_00153 0.23 -0.8 168,689 - MIT1002_00153 0.24 +0.4 168,695 + MIT1002_00153 0.25 -0.6 168,696 + MIT1002_00153 0.25 -0.2 168,778 - MIT1002_00153 0.28 +0.3 168,780 + MIT1002_00153 0.28 -0.0 168,852 - MIT1002_00153 0.32 -1.5 168,852 - MIT1002_00153 0.32 +0.9 168,916 - MIT1002_00153 0.35 +0.8 168,952 - MIT1002_00153 0.36 -1.1 168,959 - MIT1002_00153 0.37 +1.0 169,029 + MIT1002_00153 0.40 +1.1 169,045 + MIT1002_00153 0.41 -1.1 169,055 - MIT1002_00153 0.41 -0.1
Or see this region's nucleotide sequence