Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00148 and MIT1002_00149 are separated by 213 nucleotides MIT1002_00149 and MIT1002_00150 are separated by 86 nucleotides MIT1002_00150 and MIT1002_00151 are separated by 229 nucleotides
MIT1002_00148: MIT1002_00148 - ATP-dependent DNA helicase RecQ, at 161,640 to 163,481
_00148
MIT1002_00149: MIT1002_00149 - putative domain 1, at 163,695 to 164,207
_00149
MIT1002_00150: MIT1002_00150 - Magnesium transporter MgtE, at 164,294 to 165,631
_00150
MIT1002_00151: MIT1002_00151 - putative chloramphenical resistance permease RarD, at 165,861 to 166,775
_00151
Position (kb) 164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 163.305 kb on + strand at 163.453 kb on + strand at 163.556 kb on + strand at 163.556 kb on + strand at 163.556 kb on + strand at 163.561 kb on + strand at 163.564 kb on - strand at 163.569 kb on + strand at 163.847 kb on + strand, within MIT1002_00149 at 163.924 kb on + strand, within MIT1002_00149 at 163.956 kb on - strand, within MIT1002_00149 at 163.978 kb on + strand, within MIT1002_00149 at 163.995 kb on + strand, within MIT1002_00149 at 163.995 kb on + strand, within MIT1002_00149 at 163.995 kb on + strand, within MIT1002_00149 at 163.995 kb on + strand, within MIT1002_00149 at 163.995 kb on + strand, within MIT1002_00149 at 164.003 kb on - strand, within MIT1002_00149 at 164.003 kb on - strand, within MIT1002_00149 at 164.062 kb on + strand, within MIT1002_00149 at 164.062 kb on + strand, within MIT1002_00149 at 164.062 kb on + strand, within MIT1002_00149 at 164.070 kb on - strand, within MIT1002_00149 at 164.070 kb on - strand, within MIT1002_00149 at 164.080 kb on - strand, within MIT1002_00149 at 164.153 kb on - strand, within MIT1002_00149 at 164.191 kb on + strand at 164.220 kb on - strand at 164.222 kb on + strand at 164.249 kb on - strand at 164.256 kb on + strand at 164.264 kb on - strand at 164.282 kb on - strand at 164.381 kb on - strand at 164.389 kb on - strand at 164.390 kb on + strand at 164.392 kb on + strand at 164.401 kb on - strand at 164.544 kb on - strand, within MIT1002_00150 at 164.640 kb on + strand, within MIT1002_00150 at 164.648 kb on - strand, within MIT1002_00150 at 164.648 kb on - strand, within MIT1002_00150 at 164.648 kb on - strand, within MIT1002_00150 at 164.648 kb on - strand, within MIT1002_00150 at 164.667 kb on - strand, within MIT1002_00150 at 164.709 kb on + strand, within MIT1002_00150 at 164.753 kb on + strand, within MIT1002_00150 at 164.753 kb on + strand, within MIT1002_00150 at 164.753 kb on + strand, within MIT1002_00150 at 164.761 kb on - strand, within MIT1002_00150 at 164.761 kb on - strand, within MIT1002_00150 at 164.761 kb on - strand, within MIT1002_00150 at 164.788 kb on - strand, within MIT1002_00150 at 164.836 kb on + strand, within MIT1002_00150 at 164.851 kb on + strand, within MIT1002_00150 at 164.859 kb on - strand, within MIT1002_00150 at 164.910 kb on + strand, within MIT1002_00150 at 164.927 kb on - strand, within MIT1002_00150 at 164.929 kb on - strand, within MIT1002_00150 at 165.012 kb on + strand, within MIT1002_00150 at 165.012 kb on + strand, within MIT1002_00150 at 165.020 kb on - strand, within MIT1002_00150 at 165.020 kb on - strand, within MIT1002_00150 at 165.020 kb on - strand, within MIT1002_00150 at 165.025 kb on - strand, within MIT1002_00150 at 165.025 kb on - strand, within MIT1002_00150 at 165.025 kb on - strand, within MIT1002_00150 at 165.081 kb on + strand, within MIT1002_00150 at 165.081 kb on + strand, within MIT1002_00150 at 165.089 kb on - strand, within MIT1002_00150 at 165.158 kb on - strand, within MIT1002_00150 at 165.215 kb on - strand, within MIT1002_00150 at 165.284 kb on - strand, within MIT1002_00150 at 165.288 kb on + strand, within MIT1002_00150 at 165.290 kb on - strand, within MIT1002_00150 at 165.311 kb on - strand, within MIT1002_00150 at 165.319 kb on + strand, within MIT1002_00150 at 165.327 kb on - strand, within MIT1002_00150 at 165.356 kb on - strand, within MIT1002_00150 at 165.366 kb on - strand, within MIT1002_00150 at 165.379 kb on - strand, within MIT1002_00150 at 165.380 kb on + strand, within MIT1002_00150 at 165.445 kb on - strand, within MIT1002_00150 at 165.518 kb on - strand at 165.526 kb on + strand at 165.577 kb on - strand at 165.643 kb on + strand at 165.657 kb on - strand at 165.702 kb on + strand at 165.710 kb on - strand at 165.785 kb on + strand at 165.785 kb on + strand at 165.787 kb on + strand at 165.793 kb on - strand at 165.872 kb on + strand at 165.872 kb on + strand at 165.928 kb on + strand at 165.953 kb on + strand, within MIT1002_00151 at 165.953 kb on + strand, within MIT1002_00151 at 165.980 kb on - strand, within MIT1002_00151 at 165.991 kb on + strand, within MIT1002_00151 at 166.010 kb on + strand, within MIT1002_00151 at 166.018 kb on - strand, within MIT1002_00151 at 166.022 kb on + strand, within MIT1002_00151 at 166.022 kb on + strand, within MIT1002_00151 at 166.033 kb on + strand, within MIT1002_00151 at 166.035 kb on + strand, within MIT1002_00151 at 166.045 kb on + strand, within MIT1002_00151 at 166.057 kb on + strand, within MIT1002_00151 at 166.334 kb on - strand, within MIT1002_00151 at 166.353 kb on - strand, within MIT1002_00151 at 166.353 kb on - strand, within MIT1002_00151 at 166.361 kb on - strand, within MIT1002_00151 at 166.459 kb on + strand, within MIT1002_00151 at 166.552 kb on - strand, within MIT1002_00151 at 166.582 kb on - strand, within MIT1002_00151 at 166.597 kb on - strand, within MIT1002_00151 at 166.609 kb on + strand, within MIT1002_00151
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5 remove 163,305 + +0.6 163,453 + -2.4 163,556 + +1.2 163,556 + -0.3 163,556 + +2.0 163,561 + -0.0 163,564 - +0.8 163,569 + -0.2 163,847 + MIT1002_00149 0.30 -0.4 163,924 + MIT1002_00149 0.45 +0.6 163,956 - MIT1002_00149 0.51 +0.9 163,978 + MIT1002_00149 0.55 +1.6 163,995 + MIT1002_00149 0.58 +1.6 163,995 + MIT1002_00149 0.58 +0.0 163,995 + MIT1002_00149 0.58 -1.5 163,995 + MIT1002_00149 0.58 -0.9 163,995 + MIT1002_00149 0.58 +0.5 164,003 - MIT1002_00149 0.60 -2.5 164,003 - MIT1002_00149 0.60 -0.2 164,062 + MIT1002_00149 0.72 -1.3 164,062 + MIT1002_00149 0.72 +0.0 164,062 + MIT1002_00149 0.72 -2.2 164,070 - MIT1002_00149 0.73 -1.7 164,070 - MIT1002_00149 0.73 +0.1 164,080 - MIT1002_00149 0.75 -1.1 164,153 - MIT1002_00149 0.89 +0.2 164,191 + +0.3 164,220 - -2.1 164,222 + +1.4 164,249 - +0.5 164,256 + -2.1 164,264 - +0.5 164,282 - +1.5 164,381 - +1.3 164,389 - -0.6 164,390 + -0.3 164,392 + -0.2 164,401 - -1.3 164,544 - MIT1002_00150 0.19 -0.6 164,640 + MIT1002_00150 0.26 +0.1 164,648 - MIT1002_00150 0.26 -0.1 164,648 - MIT1002_00150 0.26 +0.3 164,648 - MIT1002_00150 0.26 +0.6 164,648 - MIT1002_00150 0.26 +0.5 164,667 - MIT1002_00150 0.28 -0.9 164,709 + MIT1002_00150 0.31 +0.8 164,753 + MIT1002_00150 0.34 -1.1 164,753 + MIT1002_00150 0.34 -1.8 164,753 + MIT1002_00150 0.34 +1.1 164,761 - MIT1002_00150 0.35 -0.1 164,761 - MIT1002_00150 0.35 -1.7 164,761 - MIT1002_00150 0.35 +0.5 164,788 - MIT1002_00150 0.37 +3.3 164,836 + MIT1002_00150 0.41 -2.6 164,851 + MIT1002_00150 0.42 -0.4 164,859 - MIT1002_00150 0.42 +0.4 164,910 + MIT1002_00150 0.46 +0.3 164,927 - MIT1002_00150 0.47 +2.9 164,929 - MIT1002_00150 0.47 -1.6 165,012 + MIT1002_00150 0.54 +0.7 165,012 + MIT1002_00150 0.54 -1.1 165,020 - MIT1002_00150 0.54 +0.6 165,020 - MIT1002_00150 0.54 -1.5 165,020 - MIT1002_00150 0.54 -0.7 165,025 - MIT1002_00150 0.55 -0.5 165,025 - MIT1002_00150 0.55 -0.4 165,025 - MIT1002_00150 0.55 +0.9 165,081 + MIT1002_00150 0.59 -0.3 165,081 + MIT1002_00150 0.59 +2.3 165,089 - MIT1002_00150 0.59 +1.7 165,158 - MIT1002_00150 0.65 +0.1 165,215 - MIT1002_00150 0.69 +0.7 165,284 - MIT1002_00150 0.74 +0.9 165,288 + MIT1002_00150 0.74 -0.6 165,290 - MIT1002_00150 0.74 +1.4 165,311 - MIT1002_00150 0.76 +1.1 165,319 + MIT1002_00150 0.77 -0.0 165,327 - MIT1002_00150 0.77 -0.4 165,356 - MIT1002_00150 0.79 -0.3 165,366 - MIT1002_00150 0.80 -2.2 165,379 - MIT1002_00150 0.81 -1.5 165,380 + MIT1002_00150 0.81 +0.1 165,445 - MIT1002_00150 0.86 +1.5 165,518 - -2.1 165,526 + -1.9 165,577 - +0.4 165,643 + +1.1 165,657 - +1.6 165,702 + +0.1 165,710 - -1.2 165,785 + -1.1 165,785 + -0.6 165,787 + +1.1 165,793 - -0.3 165,872 + -0.3 165,872 + -1.1 165,928 + +0.3 165,953 + MIT1002_00151 0.10 -1.5 165,953 + MIT1002_00151 0.10 +0.7 165,980 - MIT1002_00151 0.13 -0.7 165,991 + MIT1002_00151 0.14 -3.2 166,010 + MIT1002_00151 0.16 -1.2 166,018 - MIT1002_00151 0.17 +0.2 166,022 + MIT1002_00151 0.18 -2.7 166,022 + MIT1002_00151 0.18 -1.6 166,033 + MIT1002_00151 0.19 +1.5 166,035 + MIT1002_00151 0.19 +1.2 166,045 + MIT1002_00151 0.20 +0.9 166,057 + MIT1002_00151 0.21 -1.1 166,334 - MIT1002_00151 0.52 -2.4 166,353 - MIT1002_00151 0.54 -1.4 166,353 - MIT1002_00151 0.54 -0.7 166,361 - MIT1002_00151 0.55 -0.9 166,459 + MIT1002_00151 0.65 +1.1 166,552 - MIT1002_00151 0.76 -2.6 166,582 - MIT1002_00151 0.79 -0.3 166,597 - MIT1002_00151 0.80 -1.0 166,609 + MIT1002_00151 0.82 -0.2
Or see this region's nucleotide sequence