Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00004

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00003 and MIT1002_00004 are separated by 8 nucleotidesMIT1002_00004 and MIT1002_00005 are separated by 171 nucleotidesMIT1002_00005 and MIT1002_00006 are separated by 85 nucleotides MIT1002_00003: MIT1002_00003 - DNA replication and repair protein RecF, at 2,852 to 3,940 _00003 MIT1002_00004: MIT1002_00004 - DNA gyrase subunit B, at 3,949 to 6,369 _00004 MIT1002_00005: MIT1002_00005 - hypothetical protein, at 6,541 to 6,984 _00005 MIT1002_00006: MIT1002_00006 - Glycine--tRNA ligase beta subunit, at 7,070 to 9,148 _00006 Position (kb) 3 4 5 6 7Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3.046 kb on + strand, within MIT1002_00003at 3.051 kb on + strand, within MIT1002_00003at 3.051 kb on + strand, within MIT1002_00003at 3.070 kb on + strand, within MIT1002_00003at 3.181 kb on - strand, within MIT1002_00003at 3.183 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.249 kb on + strand, within MIT1002_00003at 3.519 kb on + strand, within MIT1002_00003at 3.603 kb on + strand, within MIT1002_00003at 3.679 kb on + strand, within MIT1002_00003at 6.364 kb on + strandat 6.428 kb on + strandat 6.436 kb on - strandat 6.526 kb on + strandat 6.538 kb on + strandat 6.538 kb on + strandat 6.538 kb on + strandat 6.611 kb on + strand, within MIT1002_00005at 6.611 kb on + strand, within MIT1002_00005at 6.619 kb on - strand, within MIT1002_00005at 6.623 kb on - strand, within MIT1002_00005at 6.715 kb on - strand, within MIT1002_00005at 6.723 kb on - strand, within MIT1002_00005at 6.751 kb on + strand, within MIT1002_00005at 6.751 kb on + strand, within MIT1002_00005at 6.759 kb on - strand, within MIT1002_00005at 6.759 kb on - strand, within MIT1002_00005at 6.833 kb on + strand, within MIT1002_00005at 6.852 kb on - strand, within MIT1002_00005at 6.891 kb on + strand, within MIT1002_00005at 7.013 kb on + strandat 7.021 kb on - strandat 7.021 kb on - strandat 7.031 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
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3,046 + MIT1002_00003 0.18 -2.2
3,051 + MIT1002_00003 0.18 +1.6
3,051 + MIT1002_00003 0.18 -1.0
3,070 + MIT1002_00003 0.20 +2.0
3,181 - MIT1002_00003 0.30 +0.8
3,183 + MIT1002_00003 0.30 +0.5
3,216 + MIT1002_00003 0.33 -0.1
3,216 + MIT1002_00003 0.33 +0.5
3,216 + MIT1002_00003 0.33 +0.3
3,216 + MIT1002_00003 0.33 +1.3
3,216 + MIT1002_00003 0.33 -0.3
3,216 + MIT1002_00003 0.33 -0.1
3,216 + MIT1002_00003 0.33 +0.3
3,216 + MIT1002_00003 0.33 -0.6
3,216 + MIT1002_00003 0.33 -0.8
3,216 + MIT1002_00003 0.33 -0.1
3,216 + MIT1002_00003 0.33 -2.4
3,216 + MIT1002_00003 0.33 +1.3
3,216 + MIT1002_00003 0.33 -0.3
3,216 + MIT1002_00003 0.33 -0.1
3,216 + MIT1002_00003 0.33 -0.1
3,216 + MIT1002_00003 0.33 -1.1
3,216 + MIT1002_00003 0.33 -0.6
3,224 - MIT1002_00003 0.34 -1.6
3,224 - MIT1002_00003 0.34 -2.2
3,224 - MIT1002_00003 0.34 -0.6
3,224 - MIT1002_00003 0.34 +0.8
3,224 - MIT1002_00003 0.34 +2.7
3,224 - MIT1002_00003 0.34 -0.1
3,224 - MIT1002_00003 0.34 -1.6
3,224 - MIT1002_00003 0.34 -0.6
3,224 - MIT1002_00003 0.34 +0.5
3,224 - MIT1002_00003 0.34 -1.8
3,249 + MIT1002_00003 0.36 +2.3
3,519 + MIT1002_00003 0.61 -2.7
3,603 + MIT1002_00003 0.69 +0.9
3,679 + MIT1002_00003 0.76 -0.3
6,364 + -0.6
6,428 + -0.4
6,436 - -0.5
6,526 + +2.2
6,538 + -1.3
6,538 + -0.3
6,538 + -0.4
6,611 + MIT1002_00005 0.16 +2.3
6,611 + MIT1002_00005 0.16 +1.3
6,619 - MIT1002_00005 0.18 -1.3
6,623 - MIT1002_00005 0.18 -1.3
6,715 - MIT1002_00005 0.39 -0.8
6,723 - MIT1002_00005 0.41 -0.2
6,751 + MIT1002_00005 0.47 +0.4
6,751 + MIT1002_00005 0.47 -1.2
6,759 - MIT1002_00005 0.49 -0.8
6,759 - MIT1002_00005 0.49 +1.7
6,833 + MIT1002_00005 0.66 +0.1
6,852 - MIT1002_00005 0.70 +3.0
6,891 + MIT1002_00005 0.79 -1.9
7,013 + +0.4
7,021 - +0.5
7,021 - -0.1
7,031 - +0.9

Or see this region's nucleotide sequence