Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00003

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00002 and MIT1002_00003 are separated by 125 nucleotidesMIT1002_00003 and MIT1002_00004 are separated by 8 nucleotides MIT1002_00002: MIT1002_00002 - DNA polymerase III subunit beta, at 1,626 to 2,726 _00002 MIT1002_00003: MIT1002_00003 - DNA replication and repair protein RecF, at 2,852 to 3,940 _00003 MIT1002_00004: MIT1002_00004 - DNA gyrase subunit B, at 3,949 to 6,369 _00004 Position (kb) 2 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2.730 kb on + strandat 2.733 kb on - strandat 2.842 kb on + strandat 2.855 kb on + strandat 2.913 kb on - strandat 3.046 kb on + strand, within MIT1002_00003at 3.051 kb on + strand, within MIT1002_00003at 3.051 kb on + strand, within MIT1002_00003at 3.070 kb on + strand, within MIT1002_00003at 3.181 kb on - strand, within MIT1002_00003at 3.183 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.249 kb on + strand, within MIT1002_00003at 3.519 kb on + strand, within MIT1002_00003at 3.603 kb on + strand, within MIT1002_00003at 3.679 kb on + strand, within MIT1002_00003

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 5
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2,730 + -0.5
2,733 - -0.3
2,842 + +1.2
2,855 + -0.1
2,913 - -3.4
3,046 + MIT1002_00003 0.18 -2.2
3,051 + MIT1002_00003 0.18 +1.6
3,051 + MIT1002_00003 0.18 -1.0
3,070 + MIT1002_00003 0.20 +2.0
3,181 - MIT1002_00003 0.30 +0.8
3,183 + MIT1002_00003 0.30 +0.5
3,216 + MIT1002_00003 0.33 -0.1
3,216 + MIT1002_00003 0.33 +0.5
3,216 + MIT1002_00003 0.33 +0.3
3,216 + MIT1002_00003 0.33 +1.3
3,216 + MIT1002_00003 0.33 -0.3
3,216 + MIT1002_00003 0.33 -0.1
3,216 + MIT1002_00003 0.33 +0.3
3,216 + MIT1002_00003 0.33 -0.6
3,216 + MIT1002_00003 0.33 -0.8
3,216 + MIT1002_00003 0.33 -0.1
3,216 + MIT1002_00003 0.33 -2.4
3,216 + MIT1002_00003 0.33 +1.3
3,216 + MIT1002_00003 0.33 -0.3
3,216 + MIT1002_00003 0.33 -0.1
3,216 + MIT1002_00003 0.33 -0.1
3,216 + MIT1002_00003 0.33 -1.1
3,216 + MIT1002_00003 0.33 -0.6
3,224 - MIT1002_00003 0.34 -1.6
3,224 - MIT1002_00003 0.34 -2.2
3,224 - MIT1002_00003 0.34 -0.6
3,224 - MIT1002_00003 0.34 +0.8
3,224 - MIT1002_00003 0.34 +2.7
3,224 - MIT1002_00003 0.34 -0.1
3,224 - MIT1002_00003 0.34 -1.6
3,224 - MIT1002_00003 0.34 -0.6
3,224 - MIT1002_00003 0.34 +0.5
3,224 - MIT1002_00003 0.34 -1.8
3,249 + MIT1002_00003 0.36 +2.3
3,519 + MIT1002_00003 0.61 -2.7
3,603 + MIT1002_00003 0.69 +0.9
3,679 + MIT1002_00003 0.76 -0.3

Or see this region's nucleotide sequence