Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS38570

Experiment: LB_noSalt with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS38565 and QEN71_RS38570 are separated by 80 nucleotidesQEN71_RS38570 and QEN71_RS38575 are separated by 182 nucleotidesQEN71_RS38575 and QEN71_RS38580 are separated by 49 nucleotides QEN71_RS38565: QEN71_RS38565 - LysR family transcriptional regulator, at 2,036,711 to 2,037,634 _RS38565 QEN71_RS38570: QEN71_RS38570 - TetR/AcrR family transcriptional regulator, at 2,037,715 to 2,038,278 _RS38570 QEN71_RS38575: QEN71_RS38575 - organic hydroperoxide resistance protein, at 2,038,461 to 2,038,886 _RS38575 QEN71_RS38580: QEN71_RS38580 - alpha/beta hydrolase, at 2,038,936 to 2,039,964 _RS38580 Position (kb) 2037 2038 2039Strain fitness (log2 ratio) -2 -1 0 1at 2037.005 kb on - strand, within QEN71_RS38565at 2037.042 kb on + strand, within QEN71_RS38565at 2037.102 kb on - strand, within QEN71_RS38565at 2037.264 kb on - strand, within QEN71_RS38565at 2037.295 kb on - strand, within QEN71_RS38565at 2037.359 kb on + strand, within QEN71_RS38565at 2037.429 kb on + strand, within QEN71_RS38565at 2037.561 kb on - strandat 2037.561 kb on - strandat 2037.563 kb on + strandat 2037.563 kb on + strandat 2037.564 kb on - strandat 2037.574 kb on + strandat 2037.574 kb on + strandat 2037.575 kb on - strandat 2037.633 kb on - strandat 2037.964 kb on + strand, within QEN71_RS38570at 2038.193 kb on - strand, within QEN71_RS38570at 2038.277 kb on - strandat 2038.282 kb on + strandat 2038.282 kb on + strandat 2038.283 kb on - strandat 2038.894 kb on - strandat 2038.905 kb on + strandat 2039.088 kb on + strand, within QEN71_RS38580

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Cobalt chloride 0.25 mM
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2,037,005 - QEN71_RS38565 0.32 -0.8
2,037,042 + QEN71_RS38565 0.36 +0.4
2,037,102 - QEN71_RS38565 0.42 -0.8
2,037,264 - QEN71_RS38565 0.60 -1.3
2,037,295 - QEN71_RS38565 0.63 -0.0
2,037,359 + QEN71_RS38565 0.70 -0.8
2,037,429 + QEN71_RS38565 0.78 -1.1
2,037,561 - +1.0
2,037,561 - +0.7
2,037,563 + -0.2
2,037,563 + -0.2
2,037,564 - -0.4
2,037,574 + +0.5
2,037,574 + -1.1
2,037,575 - +0.1
2,037,633 - -0.3
2,037,964 + QEN71_RS38570 0.44 -1.9
2,038,193 - QEN71_RS38570 0.85 +0.9
2,038,277 - +0.9
2,038,282 + -0.2
2,038,282 + -0.6
2,038,283 - -0.8
2,038,894 - -0.6
2,038,905 + -2.4
2,039,088 + QEN71_RS38580 0.15 -0.9

Or see this region's nucleotide sequence