Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS37370

Experiment: LB_noSalt with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS37365 and QEN71_RS37370 are separated by 585 nucleotidesQEN71_RS37370 and QEN71_RS37375 are separated by 89 nucleotides QEN71_RS37365: QEN71_RS37365 - hypothetical protein, at 1,751,286 to 1,752,194 _RS37365 QEN71_RS37370: QEN71_RS37370 - alginate export family protein, at 1,752,780 to 1,754,159 _RS37370 QEN71_RS37375: QEN71_RS37375 - glyoxalase, at 1,754,249 to 1,755,184 _RS37375 Position (kb) 1752 1753 1754 1755Strain fitness (log2 ratio) -1 0 1 2at 1751.899 kb on - strand, within QEN71_RS37365at 1751.899 kb on - strand, within QEN71_RS37365at 1751.899 kb on - strand, within QEN71_RS37365at 1752.084 kb on + strand, within QEN71_RS37365at 1752.084 kb on + strand, within QEN71_RS37365at 1752.192 kb on + strandat 1752.206 kb on - strandat 1752.339 kb on + strandat 1752.339 kb on + strandat 1752.371 kb on + strandat 1752.371 kb on + strandat 1752.372 kb on - strandat 1752.372 kb on - strandat 1752.372 kb on - strandat 1752.372 kb on - strandat 1752.372 kb on - strandat 1752.411 kb on - strandat 1752.411 kb on - strandat 1752.497 kb on + strandat 1752.498 kb on - strandat 1752.557 kb on + strandat 1752.558 kb on - strandat 1752.604 kb on + strandat 1752.647 kb on - strandat 1752.647 kb on - strandat 1752.652 kb on - strandat 1752.674 kb on + strandat 1752.675 kb on - strandat 1752.715 kb on - strandat 1752.715 kb on - strandat 1752.925 kb on + strand, within QEN71_RS37370at 1752.988 kb on + strand, within QEN71_RS37370at 1752.988 kb on + strand, within QEN71_RS37370at 1752.992 kb on + strand, within QEN71_RS37370at 1753.005 kb on - strand, within QEN71_RS37370at 1753.005 kb on - strand, within QEN71_RS37370at 1753.008 kb on - strand, within QEN71_RS37370at 1753.061 kb on + strand, within QEN71_RS37370at 1753.097 kb on + strand, within QEN71_RS37370at 1753.126 kb on + strand, within QEN71_RS37370at 1753.130 kb on - strand, within QEN71_RS37370at 1753.426 kb on + strand, within QEN71_RS37370at 1753.426 kb on + strand, within QEN71_RS37370at 1753.427 kb on - strand, within QEN71_RS37370at 1753.427 kb on - strand, within QEN71_RS37370at 1753.512 kb on + strand, within QEN71_RS37370at 1753.512 kb on + strand, within QEN71_RS37370at 1753.513 kb on - strand, within QEN71_RS37370at 1753.513 kb on - strand, within QEN71_RS37370at 1753.561 kb on + strand, within QEN71_RS37370at 1753.880 kb on - strand, within QEN71_RS37370at 1753.967 kb on - strand, within QEN71_RS37370at 1753.996 kb on + strand, within QEN71_RS37370at 1753.996 kb on + strand, within QEN71_RS37370at 1753.996 kb on + strand, within QEN71_RS37370at 1753.997 kb on - strand, within QEN71_RS37370at 1754.099 kb on + strandat 1754.281 kb on - strandat 1754.549 kb on + strand, within QEN71_RS37375at 1754.616 kb on + strand, within QEN71_RS37375at 1754.616 kb on + strand, within QEN71_RS37375at 1754.617 kb on - strand, within QEN71_RS37375at 1754.669 kb on - strand, within QEN71_RS37375at 1754.669 kb on - strand, within QEN71_RS37375at 1754.686 kb on + strand, within QEN71_RS37375at 1754.687 kb on - strand, within QEN71_RS37375at 1754.687 kb on - strand, within QEN71_RS37375at 1754.688 kb on + strand, within QEN71_RS37375at 1754.689 kb on - strand, within QEN71_RS37375at 1754.689 kb on - strand, within QEN71_RS37375at 1754.689 kb on - strand, within QEN71_RS37375at 1754.744 kb on - strand, within QEN71_RS37375at 1754.744 kb on - strand, within QEN71_RS37375at 1754.895 kb on + strand, within QEN71_RS37375at 1755.015 kb on + strand, within QEN71_RS37375at 1755.016 kb on - strand, within QEN71_RS37375at 1755.016 kb on - strand, within QEN71_RS37375at 1755.016 kb on - strand, within QEN71_RS37375at 1755.034 kb on - strand, within QEN71_RS37375at 1755.034 kb on - strand, within QEN71_RS37375at 1755.141 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Cobalt chloride 0.25 mM
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1,751,899 - QEN71_RS37365 0.67 +0.2
1,751,899 - QEN71_RS37365 0.67 -1.0
1,751,899 - QEN71_RS37365 0.67 +0.2
1,752,084 + QEN71_RS37365 0.88 -0.1
1,752,084 + QEN71_RS37365 0.88 +0.3
1,752,192 + -0.7
1,752,206 - -0.6
1,752,339 + -0.7
1,752,339 + -0.4
1,752,371 + -0.5
1,752,371 + -1.1
1,752,372 - -0.1
1,752,372 - +0.5
1,752,372 - -0.1
1,752,372 - -0.5
1,752,372 - +1.7
1,752,411 - -1.2
1,752,411 - +0.3
1,752,497 + -0.3
1,752,498 - -1.3
1,752,557 + -0.8
1,752,558 - -0.3
1,752,604 + -0.8
1,752,647 - -0.5
1,752,647 - -0.9
1,752,652 - -0.1
1,752,674 + -0.4
1,752,675 - -0.1
1,752,715 - -0.5
1,752,715 - -0.4
1,752,925 + QEN71_RS37370 0.11 -0.6
1,752,988 + QEN71_RS37370 0.15 -1.1
1,752,988 + QEN71_RS37370 0.15 +0.5
1,752,992 + QEN71_RS37370 0.15 -0.3
1,753,005 - QEN71_RS37370 0.16 -0.3
1,753,005 - QEN71_RS37370 0.16 +0.4
1,753,008 - QEN71_RS37370 0.17 +0.4
1,753,061 + QEN71_RS37370 0.20 +0.3
1,753,097 + QEN71_RS37370 0.23 +0.4
1,753,126 + QEN71_RS37370 0.25 -0.9
1,753,130 - QEN71_RS37370 0.25 +0.4
1,753,426 + QEN71_RS37370 0.47 +0.9
1,753,426 + QEN71_RS37370 0.47 +0.0
1,753,427 - QEN71_RS37370 0.47 -0.9
1,753,427 - QEN71_RS37370 0.47 -0.8
1,753,512 + QEN71_RS37370 0.53 +2.0
1,753,512 + QEN71_RS37370 0.53 +1.0
1,753,513 - QEN71_RS37370 0.53 +0.3
1,753,513 - QEN71_RS37370 0.53 +0.4
1,753,561 + QEN71_RS37370 0.57 -0.9
1,753,880 - QEN71_RS37370 0.80 -0.7
1,753,967 - QEN71_RS37370 0.86 +1.3
1,753,996 + QEN71_RS37370 0.88 -0.3
1,753,996 + QEN71_RS37370 0.88 +0.3
1,753,996 + QEN71_RS37370 0.88 -0.2
1,753,997 - QEN71_RS37370 0.88 +0.9
1,754,099 + +1.4
1,754,281 - -1.1
1,754,549 + QEN71_RS37375 0.32 -0.6
1,754,616 + QEN71_RS37375 0.39 -0.5
1,754,616 + QEN71_RS37375 0.39 +0.4
1,754,617 - QEN71_RS37375 0.39 +0.1
1,754,669 - QEN71_RS37375 0.45 +0.8
1,754,669 - QEN71_RS37375 0.45 +1.3
1,754,686 + QEN71_RS37375 0.47 -0.0
1,754,687 - QEN71_RS37375 0.47 +0.3
1,754,687 - QEN71_RS37375 0.47 -0.4
1,754,688 + QEN71_RS37375 0.47 +0.1
1,754,689 - QEN71_RS37375 0.47 +0.4
1,754,689 - QEN71_RS37375 0.47 -0.1
1,754,689 - QEN71_RS37375 0.47 -0.2
1,754,744 - QEN71_RS37375 0.53 -0.6
1,754,744 - QEN71_RS37375 0.53 +1.2
1,754,895 + QEN71_RS37375 0.69 -0.2
1,755,015 + QEN71_RS37375 0.82 +0.0
1,755,016 - QEN71_RS37375 0.82 -0.8
1,755,016 - QEN71_RS37375 0.82 -0.3
1,755,016 - QEN71_RS37375 0.82 -0.6
1,755,034 - QEN71_RS37375 0.84 -0.3
1,755,034 - QEN71_RS37375 0.84 +0.0
1,755,141 - +0.7

Or see this region's nucleotide sequence