Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS21895

Experiment: LB_noSalt with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS21890 and QEN71_RS21895 are separated by 180 nucleotidesQEN71_RS21895 and QEN71_RS21900 are separated by 143 nucleotides QEN71_RS21890: QEN71_RS21890 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein, at 4,851,824 to 4,853,908 _RS21890 QEN71_RS21895: QEN71_RS21895 - 3-(methylthio)propionyl-CoA ligase, at 4,854,089 to 4,855,786 _RS21895 QEN71_RS21900: QEN71_RS21900 - YdiU family protein, at 4,855,930 to 4,857,486 _RS21900 Position (kb) 4854 4855 4856Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4853.113 kb on + strand, within QEN71_RS21890at 4853.255 kb on - strand, within QEN71_RS21890at 4853.574 kb on + strand, within QEN71_RS21890at 4853.624 kb on + strand, within QEN71_RS21890at 4853.624 kb on + strand, within QEN71_RS21890at 4853.624 kb on + strand, within QEN71_RS21890at 4853.625 kb on - strand, within QEN71_RS21890at 4853.895 kb on + strandat 4853.895 kb on + strandat 4853.895 kb on + strandat 4853.895 kb on + strandat 4853.896 kb on - strandat 4853.896 kb on - strandat 4853.992 kb on + strandat 4853.993 kb on - strandat 4853.993 kb on - strandat 4854.025 kb on + strandat 4854.025 kb on + strandat 4854.026 kb on - strandat 4854.026 kb on - strandat 4854.068 kb on + strandat 4854.068 kb on + strandat 4854.068 kb on + strandat 4854.068 kb on + strandat 4854.068 kb on + strandat 4854.069 kb on - strandat 4854.069 kb on - strandat 4854.078 kb on - strandat 4854.090 kb on + strandat 4854.090 kb on + strandat 4854.091 kb on - strandat 4854.091 kb on - strandat 4854.091 kb on - strandat 4854.110 kb on - strandat 4854.119 kb on - strandat 4854.291 kb on + strand, within QEN71_RS21895at 4854.291 kb on + strand, within QEN71_RS21895at 4854.291 kb on + strand, within QEN71_RS21895at 4854.292 kb on - strand, within QEN71_RS21895at 4854.292 kb on - strand, within QEN71_RS21895at 4854.582 kb on + strand, within QEN71_RS21895at 4854.583 kb on - strand, within QEN71_RS21895at 4854.687 kb on + strand, within QEN71_RS21895at 4854.687 kb on + strand, within QEN71_RS21895at 4854.687 kb on + strand, within QEN71_RS21895at 4854.687 kb on + strand, within QEN71_RS21895at 4854.687 kb on + strand, within QEN71_RS21895at 4854.688 kb on - strand, within QEN71_RS21895at 4854.688 kb on - strand, within QEN71_RS21895at 4854.688 kb on - strand, within QEN71_RS21895at 4854.688 kb on - strand, within QEN71_RS21895at 4854.688 kb on - strand, within QEN71_RS21895at 4854.688 kb on - strand, within QEN71_RS21895at 4854.688 kb on - strand, within QEN71_RS21895at 4854.688 kb on - strand, within QEN71_RS21895at 4854.713 kb on + strand, within QEN71_RS21895at 4854.713 kb on + strand, within QEN71_RS21895at 4854.825 kb on + strand, within QEN71_RS21895at 4854.966 kb on + strand, within QEN71_RS21895at 4854.966 kb on + strand, within QEN71_RS21895at 4854.967 kb on - strand, within QEN71_RS21895at 4854.996 kb on + strand, within QEN71_RS21895at 4854.996 kb on + strand, within QEN71_RS21895at 4854.997 kb on - strand, within QEN71_RS21895at 4854.997 kb on - strand, within QEN71_RS21895at 4855.189 kb on - strand, within QEN71_RS21895at 4855.225 kb on + strand, within QEN71_RS21895at 4855.225 kb on + strand, within QEN71_RS21895at 4855.225 kb on + strand, within QEN71_RS21895at 4855.225 kb on + strand, within QEN71_RS21895at 4855.225 kb on + strand, within QEN71_RS21895at 4855.225 kb on + strand, within QEN71_RS21895at 4855.225 kb on + strand, within QEN71_RS21895at 4855.225 kb on + strand, within QEN71_RS21895at 4855.225 kb on + strand, within QEN71_RS21895at 4855.225 kb on + strand, within QEN71_RS21895at 4855.226 kb on - strand, within QEN71_RS21895at 4855.226 kb on - strand, within QEN71_RS21895at 4855.226 kb on - strand, within QEN71_RS21895at 4855.226 kb on - strand, within QEN71_RS21895at 4855.227 kb on + strand, within QEN71_RS21895at 4855.227 kb on + strand, within QEN71_RS21895at 4855.228 kb on - strand, within QEN71_RS21895at 4855.228 kb on - strand, within QEN71_RS21895at 4855.228 kb on - strand, within QEN71_RS21895at 4855.228 kb on - strand, within QEN71_RS21895at 4855.228 kb on - strand, within QEN71_RS21895at 4855.228 kb on - strand, within QEN71_RS21895at 4855.306 kb on - strand, within QEN71_RS21895at 4855.434 kb on + strand, within QEN71_RS21895at 4855.434 kb on + strand, within QEN71_RS21895at 4855.434 kb on + strand, within QEN71_RS21895at 4855.434 kb on + strand, within QEN71_RS21895at 4855.434 kb on + strand, within QEN71_RS21895at 4855.435 kb on - strand, within QEN71_RS21895at 4855.461 kb on + strand, within QEN71_RS21895at 4855.461 kb on + strand, within QEN71_RS21895at 4855.461 kb on + strand, within QEN71_RS21895at 4855.461 kb on + strand, within QEN71_RS21895at 4855.461 kb on + strand, within QEN71_RS21895at 4855.461 kb on + strand, within QEN71_RS21895at 4855.461 kb on + strand, within QEN71_RS21895at 4855.462 kb on - strand, within QEN71_RS21895at 4855.462 kb on - strand, within QEN71_RS21895at 4855.462 kb on - strand, within QEN71_RS21895at 4855.530 kb on + strand, within QEN71_RS21895at 4855.530 kb on + strand, within QEN71_RS21895at 4855.530 kb on + strand, within QEN71_RS21895at 4855.531 kb on - strand, within QEN71_RS21895at 4855.533 kb on + strand, within QEN71_RS21895at 4855.533 kb on + strand, within QEN71_RS21895at 4855.534 kb on - strand, within QEN71_RS21895at 4855.534 kb on - strand, within QEN71_RS21895at 4855.534 kb on - strand, within QEN71_RS21895at 4855.534 kb on - strand, within QEN71_RS21895at 4855.534 kb on - strand, within QEN71_RS21895at 4855.650 kb on + strandat 4855.650 kb on + strandat 4855.651 kb on - strandat 4855.651 kb on - strandat 4855.656 kb on + strandat 4855.657 kb on - strandat 4855.786 kb on + strandat 4855.786 kb on + strandat 4855.786 kb on + strandat 4855.787 kb on - strandat 4855.787 kb on - strandat 4855.899 kb on + strandat 4855.899 kb on + strandat 4855.899 kb on + strandat 4855.900 kb on - strandat 4855.914 kb on + strandat 4855.914 kb on + strandat 4855.914 kb on + strandat 4855.914 kb on + strandat 4855.914 kb on + strandat 4855.915 kb on - strandat 4855.915 kb on - strandat 4855.915 kb on - strandat 4855.915 kb on - strandat 4855.929 kb on + strandat 4855.929 kb on + strandat 4855.929 kb on + strandat 4855.929 kb on + strandat 4855.929 kb on + strandat 4855.929 kb on + strandat 4855.929 kb on + strandat 4855.929 kb on + strandat 4855.929 kb on + strandat 4855.929 kb on + strandat 4855.929 kb on + strandat 4855.929 kb on + strandat 4855.929 kb on + strandat 4855.930 kb on - strandat 4855.930 kb on - strandat 4855.930 kb on - strandat 4855.930 kb on - strandat 4855.930 kb on - strandat 4855.930 kb on - strandat 4855.930 kb on - strandat 4856.074 kb on + strandat 4856.074 kb on + strandat 4856.074 kb on + strandat 4856.074 kb on + strandat 4856.074 kb on + strandat 4856.074 kb on + strandat 4856.074 kb on + strandat 4856.074 kb on + strandat 4856.075 kb on - strandat 4856.075 kb on - strandat 4856.203 kb on + strand, within QEN71_RS21900at 4856.203 kb on + strand, within QEN71_RS21900at 4856.203 kb on + strand, within QEN71_RS21900at 4856.203 kb on + strand, within QEN71_RS21900at 4856.204 kb on - strand, within QEN71_RS21900at 4856.341 kb on + strand, within QEN71_RS21900at 4856.342 kb on - strand, within QEN71_RS21900at 4856.392 kb on + strand, within QEN71_RS21900at 4856.392 kb on + strand, within QEN71_RS21900at 4856.392 kb on + strand, within QEN71_RS21900at 4856.392 kb on + strand, within QEN71_RS21900at 4856.393 kb on - strand, within QEN71_RS21900at 4856.393 kb on - strand, within QEN71_RS21900at 4856.393 kb on - strand, within QEN71_RS21900at 4856.393 kb on - strand, within QEN71_RS21900at 4856.451 kb on - strand, within QEN71_RS21900at 4856.644 kb on + strand, within QEN71_RS21900at 4856.645 kb on - strand, within QEN71_RS21900at 4856.770 kb on + strand, within QEN71_RS21900

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Cobalt chloride 0.25 mM
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4,853,113 + QEN71_RS21890 0.62 +1.0
4,853,255 - QEN71_RS21890 0.69 +0.9
4,853,574 + QEN71_RS21890 0.84 -1.3
4,853,624 + QEN71_RS21890 0.86 -0.0
4,853,624 + QEN71_RS21890 0.86 -1.3
4,853,624 + QEN71_RS21890 0.86 -0.0
4,853,625 - QEN71_RS21890 0.86 -0.4
4,853,895 + +0.6
4,853,895 + -0.5
4,853,895 + -0.2
4,853,895 + -1.2
4,853,896 - -1.2
4,853,896 - -0.7
4,853,992 + -0.5
4,853,993 - +0.0
4,853,993 - +0.4
4,854,025 + -0.4
4,854,025 + +0.1
4,854,026 - -0.4
4,854,026 - -0.4
4,854,068 + +0.3
4,854,068 + +0.3
4,854,068 + -0.3
4,854,068 + +0.8
4,854,068 + -0.6
4,854,069 - -0.7
4,854,069 - +0.3
4,854,078 - +0.8
4,854,090 + -0.0
4,854,090 + -0.5
4,854,091 - -0.7
4,854,091 - +0.2
4,854,091 - +0.1
4,854,110 - -1.1
4,854,119 - -1.1
4,854,291 + QEN71_RS21895 0.12 -0.9
4,854,291 + QEN71_RS21895 0.12 -0.1
4,854,291 + QEN71_RS21895 0.12 -0.1
4,854,292 - QEN71_RS21895 0.12 +0.5
4,854,292 - QEN71_RS21895 0.12 -1.0
4,854,582 + QEN71_RS21895 0.29 +0.7
4,854,583 - QEN71_RS21895 0.29 -1.4
4,854,687 + QEN71_RS21895 0.35 +0.9
4,854,687 + QEN71_RS21895 0.35 -1.1
4,854,687 + QEN71_RS21895 0.35 +0.7
4,854,687 + QEN71_RS21895 0.35 -0.3
4,854,687 + QEN71_RS21895 0.35 -0.7
4,854,688 - QEN71_RS21895 0.35 -1.0
4,854,688 - QEN71_RS21895 0.35 -0.3
4,854,688 - QEN71_RS21895 0.35 -0.0
4,854,688 - QEN71_RS21895 0.35 +0.1
4,854,688 - QEN71_RS21895 0.35 +0.1
4,854,688 - QEN71_RS21895 0.35 -0.1
4,854,688 - QEN71_RS21895 0.35 -1.4
4,854,688 - QEN71_RS21895 0.35 -0.0
4,854,713 + QEN71_RS21895 0.37 -0.0
4,854,713 + QEN71_RS21895 0.37 +0.2
4,854,825 + QEN71_RS21895 0.43 -1.0
4,854,966 + QEN71_RS21895 0.52 -2.7
4,854,966 + QEN71_RS21895 0.52 +0.3
4,854,967 - QEN71_RS21895 0.52 +0.6
4,854,996 + QEN71_RS21895 0.53 -0.7
4,854,996 + QEN71_RS21895 0.53 +0.8
4,854,997 - QEN71_RS21895 0.53 -0.4
4,854,997 - QEN71_RS21895 0.53 -0.4
4,855,189 - QEN71_RS21895 0.65 -1.1
4,855,225 + QEN71_RS21895 0.67 -0.9
4,855,225 + QEN71_RS21895 0.67 +0.1
4,855,225 + QEN71_RS21895 0.67 -0.3
4,855,225 + QEN71_RS21895 0.67 -2.6
4,855,225 + QEN71_RS21895 0.67 -0.1
4,855,225 + QEN71_RS21895 0.67 +1.5
4,855,225 + QEN71_RS21895 0.67 -0.7
4,855,225 + QEN71_RS21895 0.67 +0.1
4,855,225 + QEN71_RS21895 0.67 +0.2
4,855,225 + QEN71_RS21895 0.67 -1.6
4,855,226 - QEN71_RS21895 0.67 -0.7
4,855,226 - QEN71_RS21895 0.67 +0.8
4,855,226 - QEN71_RS21895 0.67 +1.0
4,855,226 - QEN71_RS21895 0.67 -2.0
4,855,227 + QEN71_RS21895 0.67 -0.4
4,855,227 + QEN71_RS21895 0.67 +0.5
4,855,228 - QEN71_RS21895 0.67 -0.3
4,855,228 - QEN71_RS21895 0.67 -3.0
4,855,228 - QEN71_RS21895 0.67 -1.7
4,855,228 - QEN71_RS21895 0.67 -0.3
4,855,228 - QEN71_RS21895 0.67 -0.4
4,855,228 - QEN71_RS21895 0.67 +1.0
4,855,306 - QEN71_RS21895 0.72 -0.3
4,855,434 + QEN71_RS21895 0.79 -1.4
4,855,434 + QEN71_RS21895 0.79 -1.1
4,855,434 + QEN71_RS21895 0.79 +0.2
4,855,434 + QEN71_RS21895 0.79 -0.0
4,855,434 + QEN71_RS21895 0.79 +0.1
4,855,435 - QEN71_RS21895 0.79 +0.6
4,855,461 + QEN71_RS21895 0.81 +0.6
4,855,461 + QEN71_RS21895 0.81 +2.2
4,855,461 + QEN71_RS21895 0.81 -0.6
4,855,461 + QEN71_RS21895 0.81 -2.1
4,855,461 + QEN71_RS21895 0.81 +0.6
4,855,461 + QEN71_RS21895 0.81 +0.6
4,855,461 + QEN71_RS21895 0.81 -0.2
4,855,462 - QEN71_RS21895 0.81 -0.1
4,855,462 - QEN71_RS21895 0.81 +1.8
4,855,462 - QEN71_RS21895 0.81 +0.3
4,855,530 + QEN71_RS21895 0.85 -0.7
4,855,530 + QEN71_RS21895 0.85 -1.7
4,855,530 + QEN71_RS21895 0.85 -0.1
4,855,531 - QEN71_RS21895 0.85 +1.3
4,855,533 + QEN71_RS21895 0.85 -0.3
4,855,533 + QEN71_RS21895 0.85 +0.0
4,855,534 - QEN71_RS21895 0.85 -0.6
4,855,534 - QEN71_RS21895 0.85 +0.6
4,855,534 - QEN71_RS21895 0.85 +0.3
4,855,534 - QEN71_RS21895 0.85 -0.3
4,855,534 - QEN71_RS21895 0.85 -1.0
4,855,650 + -1.3
4,855,650 + +0.9
4,855,651 - +0.2
4,855,651 - -1.1
4,855,656 + +1.3
4,855,657 - +0.4
4,855,786 + -1.1
4,855,786 + -0.7
4,855,786 + -1.1
4,855,787 - -0.1
4,855,787 - -0.0
4,855,899 + -0.2
4,855,899 + -0.5
4,855,899 + -0.1
4,855,900 - -1.4
4,855,914 + -0.7
4,855,914 + +0.3
4,855,914 + +0.4
4,855,914 + -1.1
4,855,914 + +0.4
4,855,915 - +0.3
4,855,915 - -0.6
4,855,915 - +0.6
4,855,915 - -0.0
4,855,929 + -0.2
4,855,929 + -0.7
4,855,929 + -0.2
4,855,929 + +0.5
4,855,929 + -0.6
4,855,929 + -0.6
4,855,929 + +0.2
4,855,929 + -0.4
4,855,929 + -0.1
4,855,929 + -1.2
4,855,929 + +0.8
4,855,929 + -0.0
4,855,929 + +0.4
4,855,930 - +0.7
4,855,930 - +0.1
4,855,930 - +0.4
4,855,930 - +0.0
4,855,930 - -0.8
4,855,930 - -0.6
4,855,930 - +1.2
4,856,074 + +0.6
4,856,074 + +0.8
4,856,074 + +0.9
4,856,074 + -0.1
4,856,074 + -0.1
4,856,074 + -0.3
4,856,074 + -2.1
4,856,074 + -0.4
4,856,075 - +0.1
4,856,075 - -0.6
4,856,203 + QEN71_RS21900 0.18 -0.7
4,856,203 + QEN71_RS21900 0.18 -1.1
4,856,203 + QEN71_RS21900 0.18 +1.1
4,856,203 + QEN71_RS21900 0.18 -0.1
4,856,204 - QEN71_RS21900 0.18 -0.1
4,856,341 + QEN71_RS21900 0.26 -0.5
4,856,342 - QEN71_RS21900 0.26 +1.0
4,856,392 + QEN71_RS21900 0.30 +0.2
4,856,392 + QEN71_RS21900 0.30 +0.7
4,856,392 + QEN71_RS21900 0.30 +0.2
4,856,392 + QEN71_RS21900 0.30 -0.7
4,856,393 - QEN71_RS21900 0.30 +0.8
4,856,393 - QEN71_RS21900 0.30 -0.0
4,856,393 - QEN71_RS21900 0.30 -0.9
4,856,393 - QEN71_RS21900 0.30 -0.1
4,856,451 - QEN71_RS21900 0.33 -0.5
4,856,644 + QEN71_RS21900 0.46 -0.4
4,856,645 - QEN71_RS21900 0.46 +0.4
4,856,770 + QEN71_RS21900 0.54 -0.0

Or see this region's nucleotide sequence