Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS21495

Experiment: LB_noSalt with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS21490 and QEN71_RS21495 are separated by 132 nucleotidesQEN71_RS21495 and QEN71_RS21500 are separated by 443 nucleotides QEN71_RS21490: QEN71_RS21490 - lysylphosphatidylglycerol synthase domain-containing protein, at 4,760,610 to 4,761,653 _RS21490 QEN71_RS21495: QEN71_RS21495 - Fur family transcriptional regulator, at 4,761,786 to 4,762,253 _RS21495 QEN71_RS21500: QEN71_RS21500 - carbonic anhydrase, at 4,762,697 to 4,763,401 _RS21500 Position (kb) 4761 4762 4763Strain fitness (log2 ratio) -2 -1 0 1 2at 4760.818 kb on - strand, within QEN71_RS21490at 4760.985 kb on + strand, within QEN71_RS21490at 4760.985 kb on + strand, within QEN71_RS21490at 4760.985 kb on + strand, within QEN71_RS21490at 4760.985 kb on + strand, within QEN71_RS21490at 4760.986 kb on - strand, within QEN71_RS21490at 4760.986 kb on - strand, within QEN71_RS21490at 4760.986 kb on - strand, within QEN71_RS21490at 4760.986 kb on - strand, within QEN71_RS21490at 4760.986 kb on - strand, within QEN71_RS21490at 4760.986 kb on - strand, within QEN71_RS21490at 4760.986 kb on - strand, within QEN71_RS21490at 4760.986 kb on - strand, within QEN71_RS21490at 4761.221 kb on + strand, within QEN71_RS21490at 4761.279 kb on + strand, within QEN71_RS21490at 4761.280 kb on - strand, within QEN71_RS21490at 4761.303 kb on + strand, within QEN71_RS21490at 4761.303 kb on + strand, within QEN71_RS21490at 4761.304 kb on - strand, within QEN71_RS21490at 4761.667 kb on + strandat 4761.667 kb on + strandat 4761.668 kb on - strandat 4761.668 kb on - strandat 4761.712 kb on + strandat 4761.712 kb on + strandat 4761.712 kb on + strandat 4761.713 kb on - strandat 4761.713 kb on - strandat 4761.713 kb on - strandat 4761.713 kb on - strandat 4761.742 kb on + strandat 4761.742 kb on + strandat 4761.742 kb on + strandat 4761.743 kb on - strandat 4761.743 kb on - strandat 4761.743 kb on - strandat 4761.972 kb on + strand, within QEN71_RS21495at 4762.051 kb on + strand, within QEN71_RS21495at 4762.051 kb on + strand, within QEN71_RS21495at 4762.051 kb on + strand, within QEN71_RS21495at 4762.051 kb on + strand, within QEN71_RS21495at 4762.052 kb on - strand, within QEN71_RS21495at 4762.052 kb on - strand, within QEN71_RS21495at 4762.055 kb on + strand, within QEN71_RS21495at 4762.251 kb on + strandat 4762.251 kb on + strandat 4762.251 kb on + strandat 4762.251 kb on + strandat 4762.251 kb on + strandat 4762.251 kb on + strandat 4762.252 kb on - strandat 4762.252 kb on - strandat 4762.252 kb on - strandat 4762.353 kb on + strandat 4762.354 kb on - strandat 4762.354 kb on - strandat 4762.375 kb on + strandat 4762.376 kb on - strandat 4762.380 kb on + strandat 4762.381 kb on - strandat 4762.522 kb on + strandat 4762.523 kb on - strandat 4762.647 kb on + strandat 4762.648 kb on - strandat 4762.708 kb on + strandat 4762.708 kb on + strandat 4762.708 kb on + strandat 4762.709 kb on - strandat 4762.755 kb on + strandat 4762.755 kb on + strandat 4762.756 kb on - strandat 4762.756 kb on - strandat 4762.756 kb on - strandat 4762.756 kb on - strandat 4762.756 kb on - strandat 4762.849 kb on + strand, within QEN71_RS21500at 4762.850 kb on - strand, within QEN71_RS21500at 4762.943 kb on - strand, within QEN71_RS21500at 4762.945 kb on + strand, within QEN71_RS21500at 4762.959 kb on - strand, within QEN71_RS21500at 4762.997 kb on + strand, within QEN71_RS21500at 4762.998 kb on - strand, within QEN71_RS21500at 4762.998 kb on - strand, within QEN71_RS21500at 4763.210 kb on - strand, within QEN71_RS21500

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Cobalt chloride 0.25 mM
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4,760,818 - QEN71_RS21490 0.20 -0.2
4,760,985 + QEN71_RS21490 0.36 +0.2
4,760,985 + QEN71_RS21490 0.36 -0.4
4,760,985 + QEN71_RS21490 0.36 -1.2
4,760,985 + QEN71_RS21490 0.36 -1.2
4,760,986 - QEN71_RS21490 0.36 -0.4
4,760,986 - QEN71_RS21490 0.36 -1.6
4,760,986 - QEN71_RS21490 0.36 -1.2
4,760,986 - QEN71_RS21490 0.36 -0.7
4,760,986 - QEN71_RS21490 0.36 +0.3
4,760,986 - QEN71_RS21490 0.36 -0.2
4,760,986 - QEN71_RS21490 0.36 -0.5
4,760,986 - QEN71_RS21490 0.36 -1.3
4,761,221 + QEN71_RS21490 0.59 -0.5
4,761,279 + QEN71_RS21490 0.64 -0.4
4,761,280 - QEN71_RS21490 0.64 -0.2
4,761,303 + QEN71_RS21490 0.66 -0.5
4,761,303 + QEN71_RS21490 0.66 -0.9
4,761,304 - QEN71_RS21490 0.66 -1.9
4,761,667 + -0.4
4,761,667 + -0.9
4,761,668 - -0.8
4,761,668 - +0.8
4,761,712 + +0.6
4,761,712 + -0.4
4,761,712 + +0.1
4,761,713 - -0.3
4,761,713 - +0.5
4,761,713 - +0.2
4,761,713 - -0.9
4,761,742 + -2.4
4,761,742 + -1.5
4,761,742 + +0.2
4,761,743 - -1.1
4,761,743 - +0.3
4,761,743 - +0.2
4,761,972 + QEN71_RS21495 0.40 +0.6
4,762,051 + QEN71_RS21495 0.57 -0.1
4,762,051 + QEN71_RS21495 0.57 +0.1
4,762,051 + QEN71_RS21495 0.57 +0.7
4,762,051 + QEN71_RS21495 0.57 -0.4
4,762,052 - QEN71_RS21495 0.57 +1.3
4,762,052 - QEN71_RS21495 0.57 +0.0
4,762,055 + QEN71_RS21495 0.57 -0.3
4,762,251 + -0.6
4,762,251 + -0.0
4,762,251 + -0.8
4,762,251 + -0.2
4,762,251 + +0.3
4,762,251 + +1.6
4,762,252 - -1.0
4,762,252 - -0.3
4,762,252 - +1.8
4,762,353 + +0.7
4,762,354 - +0.0
4,762,354 - +2.1
4,762,375 + -0.1
4,762,376 - +0.6
4,762,380 + +0.4
4,762,381 - -0.4
4,762,522 + +0.9
4,762,523 - -0.5
4,762,647 + +0.5
4,762,648 - -0.2
4,762,708 + -0.6
4,762,708 + +0.6
4,762,708 + +0.0
4,762,709 - -0.1
4,762,755 + +0.6
4,762,755 + +0.3
4,762,756 - +0.2
4,762,756 - -0.7
4,762,756 - -0.2
4,762,756 - +0.9
4,762,756 - +0.3
4,762,849 + QEN71_RS21500 0.22 +0.1
4,762,850 - QEN71_RS21500 0.22 -0.1
4,762,943 - QEN71_RS21500 0.35 +0.7
4,762,945 + QEN71_RS21500 0.35 -0.7
4,762,959 - QEN71_RS21500 0.37 -0.8
4,762,997 + QEN71_RS21500 0.43 +1.6
4,762,998 - QEN71_RS21500 0.43 -1.0
4,762,998 - QEN71_RS21500 0.43 -0.2
4,763,210 - QEN71_RS21500 0.73 +0.6

Or see this region's nucleotide sequence