Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS12800

Experiment: LB_noSalt with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS12790 and QEN71_RS12795 are separated by 34 nucleotidesQEN71_RS12795 and QEN71_RS12800 are separated by 187 nucleotidesQEN71_RS12800 and QEN71_RS12805 are separated by 385 nucleotidesQEN71_RS12805 and QEN71_RS12810 are separated by 12 nucleotides QEN71_RS12790: QEN71_RS12790 - SDR family oxidoreductase, at 2,861,354 to 2,862,076 _RS12790 QEN71_RS12795: QEN71_RS12795 - hypothetical protein, at 2,862,111 to 2,862,467 _RS12795 QEN71_RS12800: QEN71_RS12800 - acyltransferase, at 2,862,655 to 2,863,884 _RS12800 QEN71_RS12805: QEN71_RS12805 - DUF308 domain-containing protein, at 2,864,270 to 2,864,848 _RS12805 QEN71_RS12810: QEN71_RS12810 - hypothetical protein, at 2,864,861 to 2,865,250 _RS12810 Position (kb) 2862 2863 2864Strain fitness (log2 ratio) -2 -1 0 1at 2861.892 kb on + strand, within QEN71_RS12790at 2861.894 kb on + strand, within QEN71_RS12790at 2861.894 kb on + strand, within QEN71_RS12790at 2862.271 kb on + strand, within QEN71_RS12795at 2862.272 kb on - strand, within QEN71_RS12795at 2862.448 kb on + strandat 2862.448 kb on + strandat 2862.448 kb on + strandat 2862.448 kb on + strandat 2862.450 kb on + strandat 2862.483 kb on + strandat 2862.645 kb on - strandat 2862.645 kb on - strandat 2862.756 kb on - strandat 2862.786 kb on - strand, within QEN71_RS12800at 2862.817 kb on - strand, within QEN71_RS12800at 2863.162 kb on - strand, within QEN71_RS12800at 2863.197 kb on - strand, within QEN71_RS12800at 2863.197 kb on - strand, within QEN71_RS12800at 2863.274 kb on + strand, within QEN71_RS12800at 2863.275 kb on - strand, within QEN71_RS12800at 2863.313 kb on + strand, within QEN71_RS12800at 2863.313 kb on + strand, within QEN71_RS12800at 2863.313 kb on + strand, within QEN71_RS12800at 2863.446 kb on - strand, within QEN71_RS12800at 2863.474 kb on + strand, within QEN71_RS12800at 2863.475 kb on - strand, within QEN71_RS12800at 2863.475 kb on - strand, within QEN71_RS12800at 2863.631 kb on + strand, within QEN71_RS12800at 2864.177 kb on - strandat 2864.331 kb on - strand, within QEN71_RS12805at 2864.780 kb on + strand, within QEN71_RS12805

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Cobalt chloride 0.25 mM
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2,861,892 + QEN71_RS12790 0.74 +0.1
2,861,894 + QEN71_RS12790 0.75 +0.1
2,861,894 + QEN71_RS12790 0.75 -0.8
2,862,271 + QEN71_RS12795 0.45 -1.1
2,862,272 - QEN71_RS12795 0.45 -0.3
2,862,448 + -0.2
2,862,448 + -0.6
2,862,448 + -2.0
2,862,448 + +0.9
2,862,450 + +0.0
2,862,483 + +0.0
2,862,645 - +1.2
2,862,645 - +0.1
2,862,756 - -0.2
2,862,786 - QEN71_RS12800 0.11 +0.3
2,862,817 - QEN71_RS12800 0.13 -0.4
2,863,162 - QEN71_RS12800 0.41 -0.9
2,863,197 - QEN71_RS12800 0.44 -0.6
2,863,197 - QEN71_RS12800 0.44 -0.1
2,863,274 + QEN71_RS12800 0.50 +0.1
2,863,275 - QEN71_RS12800 0.50 +0.6
2,863,313 + QEN71_RS12800 0.53 -0.8
2,863,313 + QEN71_RS12800 0.53 +1.5
2,863,313 + QEN71_RS12800 0.53 -0.4
2,863,446 - QEN71_RS12800 0.64 -0.4
2,863,474 + QEN71_RS12800 0.67 -0.2
2,863,475 - QEN71_RS12800 0.67 -0.1
2,863,475 - QEN71_RS12800 0.67 +1.0
2,863,631 + QEN71_RS12800 0.79 -0.5
2,864,177 - +0.1
2,864,331 - QEN71_RS12805 0.11 +0.3
2,864,780 + QEN71_RS12805 0.88 -0.2

Or see this region's nucleotide sequence