Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS07855

Experiment: LB_noSalt with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS07845 and QEN71_RS07850 are separated by 193 nucleotidesQEN71_RS07850 and QEN71_RS07855 overlap by 40 nucleotidesQEN71_RS07855 and QEN71_RS07860 overlap by 4 nucleotidesQEN71_RS07860 and QEN71_RS07865 are separated by 22 nucleotides QEN71_RS07845: QEN71_RS07845 - urea transporter, at 1,738,955 to 1,739,902 _RS07845 QEN71_RS07850: QEN71_RS07850 - putative glycolipid-binding domain-containing protein, at 1,740,096 to 1,740,650 _RS07850 QEN71_RS07855: QEN71_RS07855 - alpha/beta fold hydrolase, at 1,740,611 to 1,741,531 _RS07855 QEN71_RS07860: QEN71_RS07860 - metal-dependent hydrolase, at 1,741,528 to 1,742,409 _RS07860 QEN71_RS07865: QEN71_RS07865 - SDR family NAD(P)-dependent oxidoreductase, at 1,742,432 to 1,743,340 _RS07865 Position (kb) 1740 1741 1742Strain fitness (log2 ratio) -1 0 1at 1739.706 kb on + strand, within QEN71_RS07845at 1739.717 kb on + strand, within QEN71_RS07845at 1739.717 kb on + strand, within QEN71_RS07845at 1739.717 kb on + strand, within QEN71_RS07845at 1739.717 kb on + strand, within QEN71_RS07845at 1739.718 kb on - strand, within QEN71_RS07845at 1739.718 kb on - strand, within QEN71_RS07845at 1739.718 kb on - strand, within QEN71_RS07845at 1739.798 kb on + strand, within QEN71_RS07845at 1739.798 kb on + strand, within QEN71_RS07845at 1739.799 kb on - strand, within QEN71_RS07845at 1739.902 kb on + strandat 1739.902 kb on + strandat 1739.902 kb on + strandat 1739.903 kb on - strandat 1739.985 kb on + strandat 1739.986 kb on - strandat 1739.986 kb on - strandat 1739.996 kb on - strandat 1739.996 kb on - strandat 1739.996 kb on - strandat 1739.996 kb on - strandat 1740.007 kb on + strandat 1740.007 kb on + strandat 1740.007 kb on + strandat 1740.008 kb on - strandat 1740.008 kb on - strandat 1740.041 kb on + strandat 1740.041 kb on + strandat 1740.055 kb on - strandat 1740.175 kb on - strand, within QEN71_RS07850at 1740.175 kb on - strand, within QEN71_RS07850at 1740.175 kb on - strand, within QEN71_RS07850at 1740.228 kb on + strand, within QEN71_RS07850at 1740.228 kb on + strand, within QEN71_RS07850at 1740.228 kb on + strand, within QEN71_RS07850at 1740.229 kb on - strand, within QEN71_RS07850at 1740.515 kb on + strand, within QEN71_RS07850at 1740.515 kb on + strand, within QEN71_RS07850at 1740.515 kb on + strand, within QEN71_RS07850at 1740.516 kb on - strand, within QEN71_RS07850at 1740.516 kb on - strand, within QEN71_RS07850at 1740.516 kb on - strand, within QEN71_RS07850at 1740.516 kb on - strand, within QEN71_RS07850at 1740.516 kb on - strand, within QEN71_RS07850at 1740.540 kb on + strand, within QEN71_RS07850at 1740.686 kb on - strandat 1740.801 kb on + strand, within QEN71_RS07855at 1740.802 kb on - strand, within QEN71_RS07855at 1740.985 kb on - strand, within QEN71_RS07855at 1741.044 kb on + strand, within QEN71_RS07855at 1741.044 kb on + strand, within QEN71_RS07855at 1741.045 kb on - strand, within QEN71_RS07855at 1741.045 kb on - strand, within QEN71_RS07855at 1741.045 kb on - strand, within QEN71_RS07855at 1741.311 kb on + strand, within QEN71_RS07855at 1741.362 kb on + strand, within QEN71_RS07855at 1741.412 kb on + strand, within QEN71_RS07855at 1741.412 kb on + strand, within QEN71_RS07855at 1741.412 kb on + strand, within QEN71_RS07855at 1741.412 kb on + strand, within QEN71_RS07855at 1741.413 kb on - strand, within QEN71_RS07855at 1741.479 kb on + strandat 1741.479 kb on + strandat 1741.479 kb on + strandat 1741.479 kb on + strandat 1741.480 kb on - strandat 1741.480 kb on - strandat 1741.727 kb on + strand, within QEN71_RS07860at 1741.896 kb on + strand, within QEN71_RS07860at 1741.910 kb on + strand, within QEN71_RS07860at 1741.910 kb on + strand, within QEN71_RS07860at 1741.968 kb on - strand, within QEN71_RS07860at 1742.034 kb on - strand, within QEN71_RS07860at 1742.034 kb on - strand, within QEN71_RS07860at 1742.184 kb on + strand, within QEN71_RS07860at 1742.185 kb on - strand, within QEN71_RS07860at 1742.216 kb on - strand, within QEN71_RS07860at 1742.434 kb on - strandat 1742.436 kb on - strandat 1742.526 kb on + strand, within QEN71_RS07865at 1742.527 kb on - strand, within QEN71_RS07865

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Cobalt chloride 0.25 mM
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1,739,706 + QEN71_RS07845 0.79 -0.7
1,739,717 + QEN71_RS07845 0.80 -0.6
1,739,717 + QEN71_RS07845 0.80 -0.6
1,739,717 + QEN71_RS07845 0.80 -1.0
1,739,717 + QEN71_RS07845 0.80 -0.2
1,739,718 - QEN71_RS07845 0.80 -0.6
1,739,718 - QEN71_RS07845 0.80 -0.5
1,739,718 - QEN71_RS07845 0.80 -0.5
1,739,798 + QEN71_RS07845 0.89 -0.9
1,739,798 + QEN71_RS07845 0.89 +0.0
1,739,799 - QEN71_RS07845 0.89 +0.1
1,739,902 + +0.2
1,739,902 + +0.1
1,739,902 + +0.9
1,739,903 - -0.6
1,739,985 + +0.4
1,739,986 - -0.4
1,739,986 - +0.1
1,739,996 - +0.3
1,739,996 - -0.8
1,739,996 - -1.4
1,739,996 - -0.1
1,740,007 + -0.5
1,740,007 + +1.2
1,740,007 + +0.5
1,740,008 - +0.4
1,740,008 - -0.6
1,740,041 + +0.1
1,740,041 + +1.2
1,740,055 - -0.0
1,740,175 - QEN71_RS07850 0.14 +0.4
1,740,175 - QEN71_RS07850 0.14 -0.0
1,740,175 - QEN71_RS07850 0.14 -0.3
1,740,228 + QEN71_RS07850 0.24 +0.2
1,740,228 + QEN71_RS07850 0.24 -0.4
1,740,228 + QEN71_RS07850 0.24 +0.4
1,740,229 - QEN71_RS07850 0.24 -0.7
1,740,515 + QEN71_RS07850 0.75 +0.1
1,740,515 + QEN71_RS07850 0.75 +0.8
1,740,515 + QEN71_RS07850 0.75 +0.2
1,740,516 - QEN71_RS07850 0.76 +0.1
1,740,516 - QEN71_RS07850 0.76 -0.4
1,740,516 - QEN71_RS07850 0.76 +0.7
1,740,516 - QEN71_RS07850 0.76 +0.3
1,740,516 - QEN71_RS07850 0.76 -1.1
1,740,540 + QEN71_RS07850 0.80 +0.1
1,740,686 - -0.2
1,740,801 + QEN71_RS07855 0.21 -0.4
1,740,802 - QEN71_RS07855 0.21 +0.8
1,740,985 - QEN71_RS07855 0.41 +0.1
1,741,044 + QEN71_RS07855 0.47 -0.8
1,741,044 + QEN71_RS07855 0.47 -0.5
1,741,045 - QEN71_RS07855 0.47 -0.2
1,741,045 - QEN71_RS07855 0.47 -0.7
1,741,045 - QEN71_RS07855 0.47 -0.1
1,741,311 + QEN71_RS07855 0.76 +1.6
1,741,362 + QEN71_RS07855 0.82 -0.1
1,741,412 + QEN71_RS07855 0.87 -0.2
1,741,412 + QEN71_RS07855 0.87 -0.2
1,741,412 + QEN71_RS07855 0.87 -0.0
1,741,412 + QEN71_RS07855 0.87 +0.4
1,741,413 - QEN71_RS07855 0.87 -0.8
1,741,479 + +1.2
1,741,479 + +0.4
1,741,479 + -0.1
1,741,479 + -1.2
1,741,480 - -0.4
1,741,480 - -0.0
1,741,727 + QEN71_RS07860 0.23 +0.8
1,741,896 + QEN71_RS07860 0.42 -0.2
1,741,910 + QEN71_RS07860 0.43 -0.4
1,741,910 + QEN71_RS07860 0.43 +0.2
1,741,968 - QEN71_RS07860 0.50 -0.4
1,742,034 - QEN71_RS07860 0.57 +0.2
1,742,034 - QEN71_RS07860 0.57 -0.6
1,742,184 + QEN71_RS07860 0.74 +0.2
1,742,185 - QEN71_RS07860 0.74 +0.6
1,742,216 - QEN71_RS07860 0.78 -0.7
1,742,434 - +1.1
1,742,436 - +0.4
1,742,526 + QEN71_RS07865 0.10 +0.4
1,742,527 - QEN71_RS07865 0.10 -0.6

Or see this region's nucleotide sequence